Wall clock time and date at job start Mon Mar 30 2020 01:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48501 * 109.47012 * 270.00005 * 3 2 1 5 5 H 1.48502 * 109.47001 * 30.00130 * 3 2 1 6 6 H 1.48497 * 109.46797 * 150.00296 * 3 2 1 7 7 C 1.37886 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99502 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99828 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99995 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99847 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00257 * 179.97438 * 11 10 9 14 14 S 1.81399 * 109.47488 * 179.97438 * 13 11 10 15 15 C 1.81396 * 103.00235 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47368 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.48249 * 59.99569 * 16 15 14 18 18 C 1.53098 * 109.48010 * 180.02562 * 16 15 14 19 19 C 1.53178 * 109.15976 * 177.60079 * 18 16 15 20 20 C 1.53179 * 109.03547 * 303.01729 * 19 18 16 21 21 C 1.53088 * 109.16372 * 56.98571 * 20 19 18 22 22 O 1.42903 * 109.48512 * 299.96729 * 16 15 14 23 23 H 0.96993 * 119.99805 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47692 * 59.99548 * 9 7 2 25 25 H 1.09005 * 109.46942 * 299.99337 * 9 7 2 26 26 H 0.96992 * 119.99658 * 359.97438 * 10 9 7 27 27 H 1.09003 * 109.47188 * 59.99234 * 13 11 10 28 28 H 1.09005 * 109.46658 * 299.99511 * 13 11 10 29 29 H 1.09001 * 109.47834 * 59.99283 * 15 14 13 30 30 H 1.09006 * 109.46564 * 299.99479 * 15 14 13 31 31 H 1.08990 * 109.52021 * 297.50286 * 18 16 15 32 32 H 1.08995 * 109.52391 * 57.69903 * 18 16 15 33 33 H 1.09000 * 109.54595 * 62.88180 * 19 18 16 34 34 H 1.08996 * 109.54603 * 183.06170 * 19 18 16 35 35 H 1.09004 * 109.52091 * 176.88375 * 20 19 18 36 36 H 1.08992 * 109.52505 * 297.07775 * 20 19 18 37 37 H 1.08998 * 109.48639 * 62.37353 * 21 20 19 38 38 H 1.09000 * 109.48485 * 182.39627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6128 0.0018 11 6 1.7539 -4.8834 0.0015 12 8 0.5614 -5.1050 0.0006 13 6 2.7331 -6.0288 0.0022 14 16 1.8261 -7.5998 0.0023 15 6 3.1528 -8.8369 0.0039 16 6 2.5420 -10.2397 0.0036 17 1 1.9267 -10.3681 -0.8869 18 6 3.6616 -11.2840 0.0056 19 6 3.0431 -12.6841 0.0658 20 6 2.1527 -12.7839 1.3082 21 6 1.0915 -11.6818 1.2559 22 8 1.7335 -10.4079 1.1698 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5572 -0.8895 25 1 0.6241 -2.5568 0.8904 26 1 3.1567 -3.4355 0.0021 27 1 3.3592 -5.9710 0.8925 28 1 3.3603 -5.9711 -0.8875 29 1 3.7684 -8.7085 0.8942 30 1 3.7695 -8.7094 -0.8858 31 1 4.2528 -11.1858 -0.9048 32 1 4.3011 -11.1307 0.8748 33 1 2.4429 -12.8563 -0.8276 34 1 3.8352 -13.4306 0.1224 35 1 1.6649 -13.7585 1.3294 36 1 2.7618 -12.6608 2.2037 37 1 0.4572 -11.8290 0.3818 38 1 0.4815 -11.7213 2.1584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331224270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:39 Heat of formation + Delta-G solvation = -101.997742 kcal Electronic energy + Delta-G solvation = -18140.075894 eV Core-core repulsion = 15108.101506 eV Total energy + Delta-G solvation = -3031.974387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62134 -38.68826 -34.20649 -33.90526 -33.07244 -32.37185 -29.97004 -28.12484 -26.76552 -24.54489 -22.84671 -22.39762 -20.58164 -19.81208 -17.28966 -16.68295 -16.34091 -16.07025 -15.73552 -15.15156 -15.08942 -14.89160 -14.76128 -14.16847 -13.85268 -13.37895 -13.24789 -12.90497 -12.85600 -12.62198 -12.07638 -11.93981 -11.58153 -11.52636 -11.41923 -11.07960 -10.95403 -10.88295 -10.57436 -10.31808 -9.86235 -9.55367 -9.40586 -9.17006 -8.74783 -7.92737 -7.39858 -6.16824 -4.24098 1.59322 2.69507 3.24103 3.29505 3.30140 3.32641 3.50926 4.06643 4.34128 4.36598 4.47810 4.50685 4.66922 4.83458 4.87463 5.07762 5.17908 5.18855 5.23158 5.30014 5.31594 5.36597 5.44957 5.54158 5.55212 5.57782 5.67714 5.77175 5.93744 7.02633 7.28686 7.39267 7.51161 7.64220 7.95973 8.57264 8.75606 9.04674 9.42225 10.93387 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.064908 B = 0.002650 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.273245 B =10563.060029 C =10836.510117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.514 3.486 12 O -0.535 6.535 13 C -0.132 4.132 14 S -0.158 6.158 15 C -0.108 4.108 16 C 0.109 3.891 17 H 0.067 0.933 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.158 4.158 21 C 0.059 3.941 22 O -0.365 6.365 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.391 0.609 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.621 -24.184 0.000 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.297 3.703 12 O -0.413 6.413 13 C -0.284 4.284 14 S 0.068 5.932 15 C -0.257 4.257 16 C 0.050 3.950 17 H 0.085 0.915 18 C -0.185 4.185 19 C -0.160 4.160 20 C -0.195 4.195 21 C -0.017 4.017 22 O -0.284 6.284 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.224 0.776 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.459 -24.168 0.143 25.293 hybrid contribution 2.416 1.032 -0.193 2.634 sum 9.875 -23.136 -0.050 25.155 Atomic orbital electron populations 1.69977 1.06109 1.27350 1.48746 1.24963 0.94930 0.99471 0.94685 0.86400 0.79596 0.82605 0.78213 1.20452 1.20972 1.19761 1.21213 0.93256 0.90395 1.53384 0.91878 1.19147 0.88245 0.81714 0.97921 1.46386 1.11233 1.05652 1.72475 1.19536 0.88770 0.83767 0.78270 1.90713 1.16232 1.84287 1.50022 1.23618 1.02141 0.96297 1.06319 1.87752 1.10961 0.96551 1.97891 1.23545 1.00819 0.96032 1.05292 1.21680 0.91766 0.92073 0.89433 0.91494 1.22208 0.98314 0.94808 1.03193 1.21582 0.99405 0.96711 0.98262 1.22214 0.98749 0.99589 0.98978 1.22576 0.93933 0.83012 1.02224 1.88080 1.63997 1.33648 1.42637 0.92398 0.95384 0.95362 0.77641 0.87817 0.87946 0.89541 0.88991 0.90689 0.90802 0.91712 0.91381 0.90945 0.91026 0.93163 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.71 -15.07 5.55 -61.47 -0.34 -15.41 16 11 C 0.51 10.61 7.85 -10.99 -0.09 10.52 16 12 O -0.53 -13.48 15.87 5.55 0.09 -13.40 16 13 C -0.13 -1.96 6.42 36.00 0.23 -1.73 16 14 S -0.16 -2.46 20.52 -107.50 -2.21 -4.67 16 15 C -0.11 -1.15 5.67 37.16 0.21 -0.94 16 16 C 0.11 1.10 2.69 -26.68 -0.07 1.02 16 17 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.15 -1.07 5.42 -26.59 -0.14 -1.22 16 19 C -0.12 -0.79 6.03 -26.55 -0.16 -0.95 16 20 C -0.16 -1.08 6.14 -26.59 -0.16 -1.24 16 21 C 0.06 0.53 6.84 37.20 0.25 0.78 16 22 O -0.36 -4.37 10.00 -35.23 -0.35 -4.73 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 27 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -33.51 329.65 -8.72 -42.22 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.21 Total: 1.19 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.37 Total: -0.53 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.40 Total: -40.92 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.26 Total: -18.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.21 Total: -4.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.51 -8.72 -42.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331224270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.775 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds