Wall clock time and date at job start Mon Mar 30 2020 01:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48501 * 109.47012 * 270.00005 * 3 2 1 5 5 H 1.48502 * 109.47001 * 30.00130 * 3 2 1 6 6 H 1.48497 * 109.46797 * 150.00296 * 3 2 1 7 7 C 1.37886 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99502 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99828 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99995 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99847 * 359.97438 * 11 10 9 13 13 C 1.50693 * 120.00257 * 179.97438 * 11 10 9 14 14 S 1.81399 * 109.47488 * 179.97438 * 13 11 10 15 15 C 1.81396 * 103.00235 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47368 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.48249 * 59.99569 * 16 15 14 18 18 C 1.53098 * 109.48010 * 180.02562 * 16 15 14 19 19 C 1.53178 * 109.15976 * 177.60079 * 18 16 15 20 20 C 1.53179 * 109.03547 * 303.01729 * 19 18 16 21 21 C 1.53088 * 109.16372 * 56.98571 * 20 19 18 22 22 O 1.42903 * 109.48512 * 299.96729 * 16 15 14 23 23 H 0.96993 * 119.99805 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47692 * 59.99548 * 9 7 2 25 25 H 1.09005 * 109.46942 * 299.99337 * 9 7 2 26 26 H 0.96992 * 119.99658 * 359.97438 * 10 9 7 27 27 H 1.09003 * 109.47188 * 59.99234 * 13 11 10 28 28 H 1.09005 * 109.46658 * 299.99511 * 13 11 10 29 29 H 1.09001 * 109.47834 * 59.99283 * 15 14 13 30 30 H 1.09006 * 109.46564 * 299.99479 * 15 14 13 31 31 H 1.08990 * 109.52021 * 297.50286 * 18 16 15 32 32 H 1.08995 * 109.52391 * 57.69903 * 18 16 15 33 33 H 1.09000 * 109.54595 * 62.88180 * 19 18 16 34 34 H 1.08996 * 109.54603 * 183.06170 * 19 18 16 35 35 H 1.09004 * 109.52091 * 176.88375 * 20 19 18 36 36 H 1.08992 * 109.52505 * 297.07775 * 20 19 18 37 37 H 1.08998 * 109.48639 * 62.37353 * 21 20 19 38 38 H 1.09000 * 109.48485 * 182.39627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6128 0.0018 11 6 1.7539 -4.8834 0.0015 12 8 0.5614 -5.1050 0.0006 13 6 2.7331 -6.0288 0.0022 14 16 1.8261 -7.5998 0.0023 15 6 3.1528 -8.8369 0.0039 16 6 2.5420 -10.2397 0.0036 17 1 1.9267 -10.3681 -0.8869 18 6 3.6616 -11.2840 0.0056 19 6 3.0431 -12.6841 0.0658 20 6 2.1527 -12.7839 1.3082 21 6 1.0915 -11.6818 1.2559 22 8 1.7335 -10.4079 1.1698 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5572 -0.8895 25 1 0.6241 -2.5568 0.8904 26 1 3.1567 -3.4355 0.0021 27 1 3.3592 -5.9710 0.8925 28 1 3.3603 -5.9711 -0.8875 29 1 3.7684 -8.7085 0.8942 30 1 3.7695 -8.7094 -0.8858 31 1 4.2528 -11.1858 -0.9048 32 1 4.3011 -11.1307 0.8748 33 1 2.4429 -12.8563 -0.8276 34 1 3.8352 -13.4306 0.1224 35 1 1.6649 -13.7585 1.3294 36 1 2.7618 -12.6608 2.2037 37 1 0.4572 -11.8290 0.3818 38 1 0.4815 -11.7213 2.1584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331224270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:39 Heat of formation + Delta-G solvation = -125.582606 kcal Electronic energy + Delta-G solvation = -18141.098610 eV Core-core repulsion = 15108.101506 eV Total energy + Delta-G solvation = -3032.997104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48321 -40.29271 -36.19038 -34.53884 -34.40844 -33.77996 -31.48115 -28.97469 -28.59151 -25.18517 -24.68689 -23.34842 -21.59611 -21.17037 -19.08060 -17.71089 -17.50318 -17.41754 -16.91313 -16.81692 -16.61662 -15.93255 -15.52973 -15.45876 -14.82186 -14.67712 -14.48178 -14.07343 -14.01934 -13.90753 -13.51137 -13.28299 -13.01674 -12.74172 -12.70406 -12.24058 -12.19608 -11.97421 -11.64776 -11.49823 -11.23902 -10.94722 -10.86694 -10.81799 -10.32003 -9.90169 -8.59994 -8.29866 -6.46991 0.48296 1.43263 1.45935 1.57211 1.65273 1.65418 2.31383 2.55218 2.81092 3.05052 3.67763 3.87902 3.93008 3.94100 4.04503 4.11348 4.12838 4.26847 4.29024 4.42478 4.50806 4.69466 4.73751 4.88358 4.94744 5.07900 5.08781 5.13893 5.19434 5.21395 5.39843 5.44714 5.64685 5.82414 6.31368 6.63248 6.81208 7.21528 7.41702 8.82515 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.064908 B = 0.002650 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.273245 B =10563.060029 C =10836.510117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.701 5.701 11 C 0.508 3.492 12 O -0.587 6.587 13 C -0.107 4.107 14 S -0.243 6.243 15 C -0.084 4.084 16 C 0.104 3.896 17 H 0.059 0.941 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.152 4.152 21 C 0.051 3.949 22 O -0.396 6.396 23 H 0.269 0.731 24 H -0.012 1.012 25 H -0.013 1.013 26 H 0.411 0.589 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 -24.926 -0.270 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.294 3.706 12 O -0.468 6.468 13 C -0.258 4.258 14 S -0.016 6.016 15 C -0.232 4.232 16 C 0.045 3.955 17 H 0.077 0.923 18 C -0.178 4.178 19 C -0.160 4.160 20 C -0.190 4.190 21 C -0.025 4.025 22 O -0.316 6.316 23 H 0.078 0.922 24 H 0.006 0.994 25 H 0.005 0.995 26 H 0.248 0.752 27 H 0.153 0.847 28 H 0.158 0.842 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.015 -24.941 -0.128 27.265 hybrid contribution 1.271 1.145 -0.103 1.714 sum 12.285 -23.796 -0.231 26.781 Atomic orbital electron populations 1.70146 1.08360 1.28626 1.49900 1.26112 0.95792 1.04046 0.93828 0.85120 0.78468 0.76774 0.78624 1.19530 1.21042 1.17783 1.21614 0.94391 0.90382 1.52974 0.89544 1.18576 0.88681 0.84214 0.94161 1.46077 1.11417 1.04968 1.72687 1.20529 0.89192 0.84649 0.76240 1.90693 1.19121 1.85146 1.51865 1.23422 1.00223 0.92605 1.09526 1.88117 1.15852 0.99451 1.98205 1.23634 0.98673 0.93820 1.07097 1.21833 0.92508 0.92571 0.88604 0.92272 1.22170 0.97302 0.94176 1.04151 1.21617 0.99775 0.96619 0.97985 1.22173 0.98239 0.99389 0.99208 1.22734 0.94658 0.82839 1.02264 1.88034 1.64721 1.35305 1.43517 0.92224 0.99397 0.99501 0.75239 0.84711 0.84240 0.88546 0.86148 0.88855 0.90688 0.91505 0.89746 0.89402 0.91320 0.93258 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.99 42.34 29.54 68.60 2.03 44.37 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.56 -30.31 9.28 25.60 0.24 -30.08 16 8 H 0.09 4.21 7.60 -2.91 -0.02 4.18 16 9 C 0.27 14.87 5.43 85.63 0.46 15.33 16 10 N -0.70 -29.84 5.55 -466.78 -2.59 -32.43 16 11 C 0.51 21.09 7.85 87.66 0.69 21.78 16 12 O -0.59 -30.95 15.87 -3.07 -0.05 -31.00 16 13 C -0.11 -2.95 6.42 71.23 0.46 -2.49 16 14 S -0.24 -7.45 20.52 -56.49 -1.16 -8.61 16 15 C -0.08 -1.58 5.67 71.98 0.41 -1.17 16 16 C 0.10 1.91 2.69 30.63 0.08 2.00 16 17 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 18 C -0.14 -1.65 5.42 30.69 0.17 -1.48 16 19 C -0.12 -1.28 6.03 30.71 0.19 -1.09 16 20 C -0.15 -1.84 6.14 30.68 0.19 -1.65 16 21 C 0.05 0.89 6.84 72.01 0.49 1.39 16 22 O -0.40 -9.35 10.00 -148.98 -1.49 -10.84 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 26 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 27 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -77.13 329.65 1.12 -76.01 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.27 Total: 15.97 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 3.83 Total: 3.09 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -2.30 Total: -88.99 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.54 Total: -41.84 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.61 kcal Total: -77.13 1.12 -76.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331224270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.574 kcal (2) G-P(sol) polarization free energy of solvation -77.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds