Wall clock time and date at job start Mon Mar 30 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50692 * 120.00107 * 2 1 4 4 C 1.50704 * 119.99765 * 179.97438 * 2 1 3 5 5 N 1.46499 * 109.46790 * 95.00079 * 4 2 1 6 6 C 1.46504 * 120.00253 * 274.99998 * 5 4 2 7 7 S 1.65603 * 119.99754 * 95.00104 * 5 4 2 8 8 O 1.42096 * 104.27959 * 333.92818 * 7 5 4 9 9 O 1.42102 * 104.27940 * 206.06743 * 7 5 4 10 10 C 1.81405 * 104.44925 * 90.00114 * 7 5 4 11 11 C 1.52995 * 109.47240 * 186.18214 * 10 7 5 12 12 C 1.50710 * 115.54667 * 295.94899 * 11 10 7 13 13 H 1.07999 * 119.99746 * 114.86300 * 12 11 10 14 14 C 1.37872 * 119.99825 * 295.13041 * 12 11 10 15 15 N 1.31511 * 120.00173 * 174.17534 * 14 12 11 16 16 Si 1.86805 * 120.00025 * 354.18549 * 14 12 11 17 17 H 1.48505 * 109.47123 * 89.27214 * 16 14 12 18 18 H 1.48500 * 109.46964 * 209.26866 * 16 14 12 19 19 H 1.48497 * 109.46977 * 329.27203 * 16 14 12 20 20 C 1.53005 * 117.50202 * 81.61256 * 11 10 7 21 21 C 1.53001 * 117.50166 * 150.27679 * 11 10 7 22 22 H 1.08004 * 119.99827 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.00613 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47223 * 239.99764 * 3 2 1 25 25 H 1.08998 * 109.47549 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.47302 * 120.00010 * 3 2 1 27 27 H 1.09005 * 109.47321 * 335.00723 * 4 2 1 28 28 H 1.08994 * 109.47336 * 215.00055 * 4 2 1 29 29 H 1.09006 * 109.46926 * 269.99948 * 6 5 4 30 30 H 1.08997 * 109.47064 * 30.00232 * 6 5 4 31 31 H 1.09004 * 109.46733 * 150.00400 * 6 5 4 32 32 H 1.08999 * 109.47208 * 66.17645 * 10 7 5 33 33 H 1.09003 * 109.46777 * 306.17662 * 10 7 5 34 34 H 0.97002 * 120.00575 * 179.97438 * 15 14 12 35 35 H 1.08996 * 117.50015 * 215.00257 * 20 11 10 36 36 H 1.08996 * 117.49817 * 0.02796 * 20 11 10 37 37 H 1.08996 * 117.49607 * 359.97438 * 21 11 10 38 38 H 1.09005 * 117.49413 * 144.97215 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4118 -1.6684 -1.3752 6 6 1.4463 -2.3878 -2.2099 7 16 3.8972 -1.2660 -1.9870 8 8 4.2888 -0.1258 -1.2348 9 8 3.6872 -1.1813 -3.3899 10 6 4.9519 -2.6863 -1.5859 11 6 6.3996 -2.3702 -1.9666 12 6 6.6533 -2.1572 -3.4368 13 1 6.9685 -1.1885 -3.7956 14 6 6.4778 -3.1975 -4.3244 15 7 6.5872 -2.9842 -5.6175 16 14 6.0842 -4.9100 -3.6903 17 1 4.6122 -5.0686 -3.5739 18 1 6.6178 -5.9228 -4.6362 19 1 6.7095 -5.0999 -2.3569 20 6 7.2247 -1.5413 -0.9801 21 6 7.5071 -3.0365 -1.1478 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5401 -0.9353 -0.0004 24 1 2.6902 1.3627 -0.8899 25 1 1.3553 2.1336 -0.0005 26 1 2.6902 1.3628 0.8900 27 1 1.4384 -2.0854 0.4351 28 1 2.9741 -1.1987 0.5899 29 1 1.5864 -3.4615 -2.0843 30 1 0.4340 -2.1160 -1.9107 31 1 1.6002 -2.1210 -3.2555 32 1 4.6122 -3.5598 -2.1425 33 1 4.8939 -2.8915 -0.5169 34 1 6.4641 -3.7162 -6.2420 35 1 7.9510 -0.8421 -1.3944 36 1 6.7363 -1.2217 -0.0596 37 1 7.2043 -3.6997 -0.3376 38 1 8.4191 -3.3212 -1.6726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331735064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:08 Heat of formation + Delta-G solvation = -46.905777 kcal Electronic energy + Delta-G solvation = -20469.326023 eV Core-core repulsion = 17439.740602 eV Total energy + Delta-G solvation = -3029.585420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.81300 -38.44247 -37.92905 -36.73164 -34.82739 -34.33051 -30.16659 -28.67238 -28.11245 -27.60011 -25.40390 -23.25886 -21.23634 -20.21781 -19.34343 -18.57210 -18.41741 -17.33232 -17.02534 -16.80557 -15.77731 -15.66918 -15.50771 -14.94854 -14.89597 -14.49965 -14.40645 -14.07236 -13.87369 -13.59366 -13.12602 -13.07066 -12.91649 -12.63320 -12.58731 -12.54249 -12.37384 -12.18008 -12.14738 -12.02969 -11.80216 -11.58152 -10.96882 -10.71636 -10.37025 -10.04950 -9.85002 -8.33124 -6.44412 -0.60428 1.25108 1.26465 1.34782 1.48487 2.06427 2.32852 2.91293 2.98506 3.21170 3.37391 3.68365 3.90695 3.97972 4.03510 4.21027 4.31948 4.42591 4.49247 4.61015 4.61261 4.76514 4.79682 4.90000 4.90493 4.93624 4.97886 5.05282 5.08938 5.21062 5.28378 5.48562 5.59953 5.65794 5.74087 6.02387 6.20898 6.64584 7.26804 8.83456 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.007286 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.573566 B = 3842.049279 C = 4182.498804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.164 4.164 3 C -0.126 4.126 4 C 0.149 3.851 5 N -1.002 6.002 6 C 0.074 3.926 7 S 2.612 3.388 8 O -0.971 6.971 9 O -0.993 6.993 10 C -0.579 4.579 11 C -0.035 4.035 12 C -0.515 4.515 13 H 0.028 0.972 14 C 0.029 3.971 15 N -0.937 5.937 16 Si 0.914 3.086 17 H -0.257 1.257 18 H -0.290 1.290 19 H -0.209 1.209 20 C -0.172 4.172 21 C -0.161 4.161 22 H 0.105 0.895 23 H 0.117 0.883 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.160 0.840 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.440 -1.923 16.180 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.183 4.183 4 C 0.025 3.975 5 N -0.840 5.840 6 C -0.071 4.071 7 S 2.709 3.291 8 O -0.961 6.961 9 O -0.983 6.983 10 C -0.710 4.710 11 C -0.038 4.038 12 C -0.552 4.552 13 H 0.046 0.954 14 C -0.171 4.171 15 N -0.575 5.575 16 Si 0.736 3.264 17 H -0.182 1.182 18 H -0.216 1.216 19 H -0.131 1.131 20 C -0.209 4.209 21 C -0.199 4.199 22 H 0.123 0.877 23 H 0.136 0.864 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.178 0.822 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.267 -1.193 15.535 19.830 hybrid contribution 0.293 -0.917 -0.691 1.186 sum -11.973 -2.111 14.844 19.187 Atomic orbital electron populations 1.23967 0.94359 1.03108 0.99175 1.22239 0.96472 0.96222 1.01658 1.20944 1.00041 0.94850 1.02445 1.20569 1.01355 0.94684 0.80896 1.57551 1.30476 1.73014 1.22978 1.21751 0.94178 0.96690 0.94442 1.04758 0.74134 0.76963 0.73227 1.93468 1.83106 1.46712 1.72855 1.93515 1.84444 1.87005 1.33365 1.30224 1.09894 1.19249 1.11656 1.18755 0.87228 1.05843 0.91957 1.20481 1.47768 0.97269 0.89729 0.95415 1.25889 0.93209 1.03646 0.94308 1.70056 1.50041 1.34057 1.03324 0.86269 0.80068 0.78541 0.81551 1.18183 1.21606 1.13056 1.23062 1.03296 0.94258 1.00248 1.23150 0.99995 0.94730 1.02060 0.87722 0.86439 0.93369 0.91401 0.91113 0.86348 0.89202 0.90845 0.87966 0.92457 0.86672 0.82239 0.92300 0.90331 0.86873 0.86984 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 13.83 67.78 0.94 -2.00 16 2 C -0.16 -3.72 5.63 -16.49 -0.09 -3.81 16 3 C -0.13 -3.30 9.49 71.23 0.68 -2.63 16 4 C 0.15 3.21 5.43 85.63 0.46 3.67 16 5 N -1.00 -28.55 3.10 -543.20 -1.68 -30.23 16 6 C 0.07 1.83 10.66 127.77 1.36 3.19 16 7 S 2.61 104.93 5.08 -56.49 -0.29 104.65 16 8 O -0.97 -40.15 14.48 -127.65 -1.85 -42.00 16 9 O -0.99 -51.38 16.20 -127.65 -2.07 -53.45 16 10 C -0.58 -21.58 5.67 71.98 0.41 -21.18 16 11 C -0.04 -1.58 0.81 -52.92 -0.04 -1.62 16 12 C -0.52 -30.00 8.68 25.60 0.22 -29.78 16 13 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 14 C 0.03 1.72 5.47 84.65 0.46 2.18 16 15 N -0.94 -60.33 13.96 21.45 0.30 -60.03 16 16 Si 0.91 41.81 25.03 68.60 1.72 43.53 16 17 H -0.26 -10.86 6.85 99.48 0.68 -10.17 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.21 -8.20 5.84 99.48 0.58 -7.62 16 20 C -0.17 -6.64 9.96 30.62 0.30 -6.34 16 21 C -0.16 -6.00 8.12 30.62 0.25 -5.76 16 22 H 0.10 1.65 7.83 -2.91 -0.02 1.63 16 23 H 0.12 1.53 7.99 -2.91 -0.02 1.51 16 24 H 0.05 1.61 6.28 -2.39 -0.02 1.60 16 25 H 0.07 1.49 7.78 -2.39 -0.02 1.47 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 1.64 7.95 -2.38 -0.02 1.63 16 28 H 0.09 1.85 7.61 -2.39 -0.02 1.83 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.10 1.82 8.00 -2.39 -0.02 1.80 16 31 H 0.06 1.76 6.91 -2.38 -0.02 1.74 16 32 H 0.12 4.35 4.88 -2.39 -0.01 4.34 16 33 H 0.16 4.17 8.10 -2.39 -0.02 4.15 16 34 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 35 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 37 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -78.65 319.94 1.95 -76.70 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.88 Total: 24.89 kcal Atomic # 6 Polarization: -69.01 SS G_CDS: 4.95 Total: -64.06 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.38 Total: -90.26 kcal Atomic # 8 Polarization: -91.53 SS G_CDS: -3.92 Total: -95.44 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.72 Total: 43.53 kcal Atomic # 16 Polarization: 104.93 SS G_CDS: -0.29 Total: 104.65 kcal Total: -78.65 1.95 -76.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331735064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.794 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds