Wall clock time and date at job start Mon Mar 30 2020 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 O 1.42903 * 109.46815 * 239.99853 * 2 1 3 5 5 C 1.52999 * 109.47185 * 120.00270 * 2 1 3 6 6 N 1.46498 * 109.47351 * 186.13853 * 5 2 1 7 7 C 1.34777 * 120.00196 * 262.84215 * 6 5 2 8 8 O 1.21281 * 119.99775 * 187.59581 * 7 6 5 9 9 C 1.50697 * 120.00038 * 7.59618 * 7 6 5 10 10 S 1.80999 * 109.46967 * 186.96489 * 9 7 6 11 11 C 1.76198 * 99.99861 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00421 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00002 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00319 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00075 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47459 * 89.99988 * 15 13 11 17 17 H 1.48507 * 109.46816 * 210.00008 * 15 13 11 18 18 H 1.48501 * 109.47125 * 329.99432 * 15 13 11 19 19 C 1.46505 * 119.99668 * 82.83672 * 6 5 2 20 20 C 1.53000 * 117.49802 * 196.28295 * 19 6 5 21 21 C 1.53001 * 60.00055 * 252.51295 * 20 19 6 22 22 H 1.09006 * 109.47120 * 300.00034 * 1 2 3 23 23 H 1.09007 * 109.47230 * 59.99914 * 1 2 3 24 24 H 1.09001 * 109.47579 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46828 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.46940 * 300.00126 * 3 2 1 27 27 H 1.08992 * 109.46944 * 59.99939 * 3 2 1 28 28 H 0.96701 * 114.00120 * 307.94116 * 4 2 1 29 29 H 1.09002 * 109.47536 * 66.14111 * 5 2 1 30 30 H 1.08997 * 109.47172 * 306.14277 * 5 2 1 31 31 H 1.08999 * 109.46705 * 306.96361 * 9 7 6 32 32 H 1.08999 * 109.46976 * 66.96139 * 9 7 6 33 33 H 0.96994 * 120.00574 * 180.02562 * 14 13 11 34 34 H 1.09001 * 115.55244 * 341.99305 * 19 6 5 35 35 H 1.09001 * 117.49926 * 359.97438 * 20 19 6 36 36 H 1.08997 * 117.50281 * 145.02449 * 20 19 6 37 37 H 1.09005 * 117.49903 * 252.51167 * 21 20 19 38 38 H 1.08997 * 117.51921 * 107.48263 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.4975 -0.5947 1.3254 7 6 4.2850 -1.5902 0.8722 8 8 5.4826 -1.5487 1.0588 9 6 3.6774 -2.7547 0.1335 10 16 4.9469 -4.0107 -0.1615 11 6 3.9890 -5.2199 -1.0128 12 1 2.9395 -5.0449 -1.1982 13 6 4.5829 -6.3979 -1.4442 14 7 5.8618 -6.6115 -1.2178 15 14 3.5675 -7.6796 -2.3474 16 1 3.6170 -7.4118 -3.8071 17 1 4.1188 -9.0310 -2.0731 18 1 2.1595 -7.6152 -1.8797 19 6 4.0990 0.6140 1.8941 20 6 5.5809 0.8667 1.6095 21 6 5.1335 0.4320 3.0066 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6252 -1.5530 -1.2964 29 1 1.7692 -1.7758 1.1960 30 1 1.5896 -0.2750 2.1358 31 1 2.8733 -3.1843 0.7310 32 1 3.2775 -2.4111 -0.8205 33 1 6.2770 -7.4346 -1.5195 34 1 3.4426 1.4821 1.9544 35 1 6.1084 0.1333 0.9996 36 1 5.8998 1.9012 1.4824 37 1 5.1579 1.1805 3.7986 38 1 5.3662 -0.5871 3.3156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331782773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:53 Heat of formation + Delta-G solvation = -71.689882 kcal Electronic energy + Delta-G solvation = -19865.522191 eV Core-core repulsion = 16834.862051 eV Total energy + Delta-G solvation = -3030.660140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55200 -39.11279 -37.34070 -35.09514 -34.57474 -33.09668 -30.43862 -28.31428 -27.66283 -27.13242 -23.89918 -23.25813 -21.44042 -20.50799 -19.42813 -18.37457 -17.55577 -17.30026 -16.87347 -16.42451 -15.96787 -15.74219 -15.45501 -15.24229 -14.75394 -14.50480 -14.00952 -13.79080 -13.35281 -13.33166 -13.13627 -12.93274 -12.90528 -12.74741 -12.60344 -12.54004 -12.37371 -12.08791 -11.70543 -11.55529 -11.24593 -11.13892 -11.07083 -10.41203 -10.23064 -9.30041 -8.64426 -8.33449 -6.11139 1.26618 1.42899 1.46539 1.55593 1.57754 2.07906 2.29072 2.98824 3.00979 3.20580 3.39622 3.65993 3.76460 3.91138 3.99845 4.07982 4.16339 4.19054 4.27881 4.40351 4.59039 4.69102 4.71271 4.80457 4.84277 4.93897 4.99947 5.08934 5.10518 5.30314 5.39214 5.41555 5.42369 5.78350 6.20592 6.32296 6.82514 7.07658 7.22011 8.75968 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.005683 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.294056 B = 4926.128071 C = 6000.175538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 C -0.145 4.145 4 O -0.578 6.578 5 C 0.079 3.921 6 N -0.573 5.573 7 C 0.533 3.467 8 O -0.553 6.553 9 C -0.124 4.124 10 S -0.158 6.158 11 C -0.541 4.541 12 H 0.085 0.915 13 C 0.012 3.988 14 N -0.913 5.913 15 Si 0.999 3.001 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.255 1.255 19 C 0.080 3.920 20 C -0.208 4.208 21 C -0.186 4.186 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.382 0.618 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.270 0.730 34 H 0.170 0.830 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 16.824 5.916 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.064 3.936 3 C -0.202 4.202 4 O -0.387 6.387 5 C -0.043 4.043 6 N -0.304 5.304 7 C 0.321 3.679 8 O -0.432 6.432 9 C -0.275 4.275 10 S 0.069 5.931 11 C -0.689 4.689 12 H 0.103 0.897 13 C -0.192 4.192 14 N -0.550 5.550 15 Si 0.820 3.180 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.179 1.179 19 C -0.024 4.024 20 C -0.246 4.246 21 C -0.225 4.225 22 H 0.108 0.892 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.231 0.769 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.187 0.813 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.519 17.273 6.228 22.223 hybrid contribution -1.473 -1.609 -0.905 2.361 sum -13.992 15.664 5.323 21.667 Atomic orbital electron populations 1.22412 0.92916 1.03516 1.04048 1.21854 0.94167 0.93375 0.84194 1.21960 1.01638 0.93213 1.03367 1.86644 1.71289 1.34826 1.45926 1.22689 0.78190 1.02947 1.00513 1.47139 1.06951 1.16084 1.60195 1.20160 0.86355 0.83394 0.77967 1.90568 1.16775 1.77888 1.57968 1.23534 1.03033 0.97053 1.03870 1.85588 1.16515 1.15830 1.75125 1.23179 0.98292 1.04867 1.42557 0.89740 1.26140 0.96439 1.00129 0.96535 1.70191 1.12471 1.26797 1.45551 0.84950 0.78468 0.76329 0.78203 1.19454 1.20450 1.17869 1.22104 0.91060 0.89001 1.00196 1.23630 0.97717 1.02883 1.00344 1.23250 1.04406 1.02095 0.92714 0.89207 0.91654 0.91481 0.92995 0.92292 0.88345 0.76879 0.89522 0.86205 0.88098 0.86743 0.92086 0.81350 0.88998 0.86927 0.85620 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 8.75 71.98 0.63 -1.33 16 2 C 0.11 1.83 1.20 -10.80 -0.01 1.82 16 3 C -0.14 -2.35 7.43 71.98 0.53 -1.82 16 4 O -0.58 -14.33 11.12 -148.98 -1.66 -15.99 16 5 C 0.08 1.47 4.71 86.38 0.41 1.88 16 6 N -0.57 -15.72 2.56 -797.83 -2.04 -17.76 16 7 C 0.53 20.81 7.36 87.66 0.65 21.45 16 8 O -0.55 -26.19 11.63 -3.03 -0.04 -26.22 16 9 C -0.12 -5.08 4.78 71.23 0.34 -4.74 16 10 S -0.16 -8.93 20.59 -56.49 -1.16 -10.09 16 11 C -0.54 -30.94 9.50 67.95 0.65 -30.30 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.69 5.49 84.86 0.47 1.15 16 14 N -0.91 -56.78 13.22 21.65 0.29 -56.49 16 15 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 19 C 0.08 1.87 4.68 44.99 0.21 2.08 16 20 C -0.21 -5.94 9.62 30.59 0.29 -5.65 16 21 C -0.19 -4.79 9.87 30.59 0.30 -4.49 16 22 H 0.09 0.64 8.14 -2.38 -0.02 0.63 16 23 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 1.10 5.83 -2.39 -0.01 1.08 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 0.93 7.71 -2.39 -0.02 0.91 16 28 H 0.38 8.00 7.98 -74.06 -0.59 7.41 16 29 H 0.09 1.68 6.05 -2.39 -0.01 1.66 16 30 H 0.12 1.42 8.12 -2.39 -0.02 1.40 16 31 H 0.10 3.66 6.79 -2.40 -0.02 3.65 16 32 H 0.11 4.40 5.42 -2.40 -0.01 4.39 16 33 H 0.27 15.60 8.31 -92.71 -0.77 14.82 16 34 H 0.17 2.50 6.31 -2.39 -0.02 2.48 16 35 H 0.09 3.60 5.27 -3.36 -0.02 3.58 16 36 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.06 2.09 7.55 -2.39 -0.02 2.07 16 Total: -1.00 -78.89 315.37 2.36 -76.53 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.47 Total: 24.30 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: 4.46 Total: -19.93 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.75 Total: -74.25 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.69 Total: -42.21 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -78.89 2.36 -76.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331782773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.839 kcal (2) G-P(sol) polarization free energy of solvation -78.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds