Wall clock time and date at job start Mon Mar 30 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99713 * 2 1 4 4 H 1.48497 * 109.46891 * 269.99232 * 3 2 1 5 5 H 1.48491 * 109.47475 * 29.99632 * 3 2 1 6 6 H 1.48498 * 109.46835 * 149.99809 * 3 2 1 7 7 C 1.37868 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00356 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.46399 * 110.99777 * 300.21234 * 10 9 7 12 12 C 1.53215 * 109.73162 * 162.60734 * 11 10 9 13 13 S 1.81777 * 108.57900 * 62.83396 * 12 11 10 14 14 O 1.42103 * 108.68499 * 193.31260 * 13 12 11 15 15 O 1.42103 * 108.80168 * 61.92133 * 13 12 11 16 16 C 1.81904 * 101.11938 * 307.59687 * 13 12 11 17 17 H 1.08998 * 109.67521 * 292.28190 * 16 13 12 18 18 C 1.53043 * 108.86302 * 171.54163 * 16 13 12 19 19 C 1.52931 * 109.74886 * 181.58035 * 18 16 13 20 20 C 1.53039 * 109.27073 * 60.18918 * 19 18 16 21 21 C 1.52917 * 109.32320 * 299.66012 * 20 19 18 22 22 C 1.46660 * 110.99673 * 174.17994 * 10 9 7 23 23 H 1.08995 * 109.48617 * 76.86003 * 22 10 9 24 24 H 0.97002 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46904 * 59.99919 * 9 7 2 26 26 H 1.08999 * 109.47456 * 299.99911 * 9 7 2 27 27 H 1.08997 * 109.42943 * 42.53096 * 11 10 9 28 28 H 1.08996 * 109.38611 * 282.66294 * 11 10 9 29 29 H 1.08993 * 109.62349 * 303.10914 * 12 11 10 30 30 H 1.09000 * 109.61798 * 182.55617 * 12 11 10 31 31 H 1.08997 * 109.43448 * 301.63843 * 18 16 13 32 32 H 1.08999 * 109.43060 * 61.53832 * 18 16 13 33 33 H 1.09002 * 109.47093 * 300.26526 * 19 18 16 34 34 H 1.08996 * 109.53125 * 180.14653 * 19 18 16 35 35 H 1.09000 * 109.50112 * 179.70127 * 20 19 18 36 36 H 1.09001 * 109.50325 * 59.62584 * 20 19 18 37 37 H 1.08993 * 109.43499 * 180.31933 * 21 20 19 38 38 H 1.09004 * 109.42672 * 300.22050 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 3.0694 -3.5675 -1.1806 12 6 4.3040 -4.4462 -0.9548 13 16 3.7595 -6.1680 -0.7478 14 8 4.8443 -6.9303 -0.2367 15 8 3.1132 -6.5905 -1.9408 16 6 2.5081 -5.9854 0.5597 17 1 2.9919 -5.6979 1.4931 18 6 1.7737 -7.3172 0.7312 19 6 0.6890 -7.1752 1.7998 20 6 -0.3097 -6.0997 1.3661 21 6 0.4211 -4.7661 1.2050 22 6 1.5119 -4.9003 0.1394 23 1 1.0578 -5.1731 -0.8132 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.3839 -2.5391 -1.3580 28 1 2.5181 -3.9325 -2.0471 29 1 4.8279 -4.1177 -0.0572 30 1 4.9676 -4.3733 -1.8165 31 1 1.3144 -7.6026 -0.2152 32 1 2.4836 -8.0861 1.0361 33 1 1.1466 -6.8866 2.7460 34 1 0.1701 -8.1261 1.9209 35 1 -1.0877 -5.9992 2.1228 36 1 -0.7611 -6.3844 0.4156 37 1 -0.2896 -3.9975 0.9016 38 1 0.8758 -4.4849 2.1549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332734335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:30 Heat of formation + Delta-G solvation = -73.860458 kcal Electronic energy + Delta-G solvation = -20584.033970 eV Core-core repulsion = 17553.279707 eV Total energy + Delta-G solvation = -3030.754263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22800 -36.80390 -36.10970 -35.76713 -32.87158 -31.38428 -30.74122 -29.22130 -26.25723 -23.53386 -22.92816 -22.34016 -20.19120 -19.63165 -18.59744 -16.97365 -16.31973 -16.19742 -15.55758 -15.20731 -14.94206 -14.56094 -14.01540 -13.99356 -13.56205 -13.15415 -12.86941 -12.60861 -12.23206 -12.05033 -11.91406 -11.83132 -11.59284 -11.46723 -11.25865 -11.24229 -11.01749 -10.83340 -10.77557 -10.60288 -10.39654 -10.09794 -9.73209 -9.52632 -9.22009 -8.56331 -7.55979 -6.16004 -4.18151 0.24462 2.86144 3.23540 3.30898 3.33724 3.76887 4.07471 4.30589 4.45030 4.61076 4.77887 4.91175 5.00750 5.13555 5.20491 5.26232 5.35913 5.40971 5.53558 5.55440 5.59259 5.76888 5.89195 5.99318 6.12796 6.15525 6.22118 6.24177 6.40962 6.52544 6.62480 7.10666 7.16613 7.59337 7.83429 7.95203 8.32802 8.87881 9.46557 10.94584 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.006609 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.353493 B = 4235.557800 C = 5178.764857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.065 0.935 9 C 0.192 3.808 10 N -0.550 5.550 11 C 0.068 3.932 12 C -0.588 4.588 13 S 2.398 3.602 14 O -0.955 6.955 15 O -0.946 6.946 16 C -0.542 4.542 17 H 0.144 0.856 18 C -0.107 4.107 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.110 4.110 22 C 0.102 3.898 23 H 0.053 0.947 24 H 0.263 0.737 25 H -0.004 1.004 26 H 0.049 0.951 27 H 0.116 0.884 28 H 0.043 0.957 29 H 0.139 0.861 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -11.313 1.709 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.275 5.275 11 C -0.061 4.061 12 C -0.720 4.720 13 S 2.585 3.415 14 O -0.952 6.952 15 O -0.943 6.943 16 C -0.653 4.653 17 H 0.162 0.838 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.008 4.008 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.067 0.933 27 H 0.134 0.866 28 H 0.061 0.939 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.014 -11.911 1.633 12.394 hybrid contribution -0.145 1.617 -0.254 1.643 sum 2.868 -10.294 1.380 10.775 Atomic orbital electron populations 1.69941 1.06044 1.27024 1.50305 1.24963 0.94871 0.99326 0.95165 0.86507 0.79812 0.83060 0.78113 1.20677 1.21176 1.19775 1.21169 0.93517 0.89931 1.51024 0.91660 1.19861 0.90088 0.86122 0.97120 1.61462 1.24738 1.02629 1.38715 1.21726 0.90280 1.02326 0.91759 1.30187 1.08779 1.21545 1.11475 1.08554 0.77068 0.78602 0.77310 1.93540 1.52490 1.68173 1.81037 1.93547 1.76135 1.80273 1.44325 1.30052 1.13857 1.03168 1.18259 0.83805 1.21357 0.98643 0.92998 1.01550 1.21439 0.96104 0.99022 0.98091 1.21590 0.97724 0.95157 1.01465 1.21692 0.96943 0.97094 0.99117 1.21290 0.92340 0.88415 0.98708 0.92938 0.92742 0.98604 0.93325 0.86639 0.93879 0.84277 0.85339 0.90326 0.90755 0.91471 0.91689 0.91620 0.91965 0.89836 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -13.35 8.23 -34.44 -0.28 -13.64 16 8 H 0.07 1.64 6.82 -52.48 -0.36 1.29 16 9 C 0.19 4.49 4.04 -4.97 -0.02 4.47 16 10 N -0.55 -10.45 4.35 -228.39 -0.99 -11.44 16 11 C 0.07 1.20 5.23 -3.99 -0.02 1.18 16 12 C -0.59 -8.31 6.58 37.27 0.25 -8.06 16 13 S 2.40 35.60 4.70 -107.50 -0.51 35.09 16 14 O -0.96 -16.11 18.11 -57.81 -1.05 -17.16 16 15 O -0.95 -16.50 17.94 -57.81 -1.04 -17.54 16 16 C -0.54 -7.49 2.57 -26.61 -0.07 -7.56 16 17 H 0.14 1.82 8.14 -51.93 -0.42 1.40 16 18 C -0.11 -1.29 5.11 -26.74 -0.14 -1.43 16 19 C -0.11 -1.18 5.93 -26.75 -0.16 -1.34 16 20 C -0.12 -1.49 5.93 -26.75 -0.16 -1.65 16 21 C -0.11 -1.70 4.27 -26.73 -0.11 -1.81 16 22 C 0.10 1.66 1.80 -67.70 -0.12 1.54 16 23 H 0.05 0.88 7.94 -51.93 -0.41 0.47 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 25 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.05 1.19 5.79 -51.93 -0.30 0.89 16 27 H 0.12 2.19 6.07 -51.93 -0.32 1.87 16 28 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 29 H 0.14 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.46 6.20 -51.93 -0.32 1.13 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 302.92 15.07 4.57 4.57 Total: -1.00 -31.08 302.92 -10.14 -41.21 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.90 Total: 0.88 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -0.93 Total: -26.83 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.26 Total: -35.72 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -2.08 Total: -34.70 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 35.60 SS G_CDS: -0.51 Total: 35.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.08 -10.14 -41.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332734335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.647 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds