Wall clock time and date at job start Mon Mar 30 2020 01:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47133 * 269.99792 * 3 2 1 5 5 H 1.48502 * 109.47011 * 30.00399 * 3 2 1 6 6 H 1.48506 * 109.46978 * 150.00057 * 3 2 1 7 7 C 1.37879 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99813 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99987 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.46173 * 111.38671 * 300.03051 * 10 9 7 12 12 C 1.53210 * 110.29691 * 162.98242 * 11 10 9 13 13 S 1.81810 * 108.56328 * 62.62160 * 12 11 10 14 14 O 1.42107 * 108.68487 * 193.48607 * 13 12 11 15 15 O 1.42092 * 108.79898 * 62.09373 * 13 12 11 16 16 C 1.81666 * 101.12582 * 307.76645 * 13 12 11 17 17 H 1.09002 * 109.56613 * 171.94437 * 16 13 12 18 18 C 1.52941 * 109.91625 * 292.39774 * 16 13 12 19 19 C 1.52215 * 109.66702 * 179.97438 * 18 16 13 20 20 C 1.52959 * 109.76054 * 300.65795 * 19 18 16 21 21 C 1.53017 * 109.62732 * 59.27218 * 20 19 18 22 22 C 1.46637 * 111.00106 * 173.54131 * 10 9 7 23 23 H 1.09003 * 109.62707 * 75.89503 * 22 10 9 24 24 H 0.97006 * 119.99844 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47174 * 60.00295 * 9 7 2 26 26 H 1.08995 * 109.46905 * 299.99527 * 9 7 2 27 27 H 1.09005 * 109.33851 * 42.62486 * 11 10 9 28 28 H 1.08999 * 108.94121 * 283.09677 * 11 10 9 29 29 H 1.08994 * 109.62427 * 302.89342 * 12 11 10 30 30 H 1.09006 * 109.62296 * 182.33978 * 12 11 10 31 31 H 1.09008 * 109.50370 * 300.28787 * 18 16 13 32 32 H 1.09001 * 109.50419 * 60.40332 * 18 16 13 33 33 H 1.09008 * 109.49734 * 180.49655 * 19 18 16 34 34 H 1.08997 * 109.26145 * 60.67359 * 19 18 16 35 35 H 1.08994 * 109.44221 * 299.22419 * 20 19 18 36 36 H 1.09000 * 109.43809 * 179.30486 * 20 19 18 37 37 H 1.08995 * 109.52303 * 59.69263 * 21 20 19 38 38 H 1.08996 * 109.52707 * 179.82627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 3.5361 -3.3089 1.1780 12 6 3.6868 -4.8182 0.9618 13 16 5.4518 -5.1991 0.7494 14 8 5.5746 -6.5211 0.2429 15 8 6.1436 -4.8423 1.9382 16 6 5.9076 -4.0284 -0.5629 17 1 6.9884 -4.0405 -0.7038 18 6 5.2161 -4.4167 -1.8707 19 6 5.6012 -3.4321 -2.9658 20 6 5.1833 -2.0178 -2.5599 21 6 5.8743 -1.6337 -1.2498 22 6 5.4588 -2.6212 -0.1535 23 1 5.9342 -2.3446 0.7876 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8751 -0.6798 -0.8895 27 1 2.4877 -3.0718 1.3589 28 1 4.1303 -3.0051 2.0398 29 1 3.1378 -5.1168 0.0688 30 1 3.2989 -5.3527 1.8290 31 1 5.5215 -5.4226 -2.1591 32 1 4.1352 -4.3894 -1.7329 33 1 5.1001 -3.7062 -3.8942 34 1 6.6807 -3.4631 -3.1138 35 1 4.1025 -1.9839 -2.4237 36 1 5.4725 -1.3156 -3.3419 37 1 6.9553 -1.6717 -1.3834 38 1 5.5778 -0.6246 -0.9638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332734348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:32 Heat of formation + Delta-G solvation = -64.729492 kcal Electronic energy + Delta-G solvation = -20973.841920 eV Core-core repulsion = 17943.483605 eV Total energy + Delta-G solvation = -3030.358315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.58731 -36.94330 -35.88184 -35.46114 -32.86099 -31.76581 -30.57623 -29.40405 -26.72547 -23.48905 -22.57528 -22.41150 -20.89334 -19.01494 -18.20878 -17.20564 -16.60355 -16.33138 -15.52699 -15.36556 -15.06217 -14.55211 -14.02382 -13.96525 -13.34320 -13.22342 -12.78663 -12.53110 -12.43915 -12.14939 -12.02962 -11.85146 -11.77179 -11.67955 -11.39953 -11.24856 -10.91601 -10.77960 -10.69081 -10.27516 -10.18722 -10.00935 -9.87481 -9.61225 -9.28161 -8.68180 -7.65640 -6.18114 -4.16865 0.22070 2.79654 3.18879 3.27345 3.28494 3.78268 3.98936 4.29931 4.36298 4.58120 4.71776 4.99632 5.01161 5.14652 5.21916 5.27339 5.40893 5.44251 5.49221 5.58993 5.63382 5.83658 5.98554 6.03196 6.11345 6.26559 6.30988 6.38296 6.41356 6.44312 6.68423 6.81304 6.85828 7.38960 7.58667 7.81036 8.46788 8.87915 9.42584 10.94305 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.007291 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.082066 B = 3839.509458 C = 4378.286252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.084 0.916 9 C 0.161 3.839 10 N -0.536 5.536 11 C 0.069 3.931 12 C -0.585 4.585 13 S 2.400 3.600 14 O -0.952 6.952 15 O -0.949 6.949 16 C -0.545 4.545 17 H 0.132 0.868 18 C -0.096 4.096 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.109 4.109 22 C 0.097 3.903 23 H 0.054 0.946 24 H 0.265 0.735 25 H -0.008 1.008 26 H 0.044 0.956 27 H 0.121 0.879 28 H 0.042 0.958 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.710 -6.044 -2.739 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.101 0.899 9 C 0.036 3.964 10 N -0.261 5.261 11 C -0.060 4.060 12 C -0.717 4.717 13 S 2.586 3.414 14 O -0.949 6.949 15 O -0.947 6.947 16 C -0.656 4.656 17 H 0.150 0.850 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.147 4.147 22 C -0.013 4.013 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.010 0.990 26 H 0.062 0.938 27 H 0.139 0.861 28 H 0.060 0.940 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.901 -6.804 -2.647 13.120 hybrid contribution 0.317 1.836 0.329 1.892 sum 11.219 -4.967 -2.318 12.486 Atomic orbital electron populations 1.69879 1.06140 1.27029 1.50359 1.24867 0.94696 0.98822 0.94638 0.86933 0.80429 0.84160 0.78704 1.20021 1.21152 1.19129 1.21016 0.88522 0.94801 1.51234 0.89853 1.20306 0.96997 0.82974 0.96106 1.60884 1.07005 1.18833 1.39410 1.21666 1.05804 0.87282 0.91212 1.30148 1.23238 1.06582 1.11703 1.08464 0.79547 0.76424 0.76932 1.93541 1.86085 1.34190 1.81054 1.93552 1.71587 1.84883 1.44628 1.30050 1.09283 1.11745 1.14497 0.85048 1.21129 1.01940 0.98969 0.91420 1.21210 1.00242 0.95291 0.97379 1.21549 1.03310 0.95382 0.95596 1.21687 0.99381 0.98643 0.95031 1.21348 0.90137 0.91379 0.98393 0.92849 0.92510 0.99016 0.93848 0.86091 0.94022 0.84052 0.85155 0.91008 0.88885 0.91720 0.92840 0.88900 0.92765 0.92121 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 13.96 55.43 0.77 -25.03 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.52 -13.16 8.80 -34.44 -0.30 -13.46 16 8 H 0.08 2.29 7.09 -52.49 -0.37 1.91 16 9 C 0.16 3.41 2.75 -4.98 -0.01 3.40 16 10 N -0.54 -9.44 2.86 -228.42 -0.65 -10.09 16 11 C 0.07 1.17 5.22 -4.11 -0.02 1.14 16 12 C -0.59 -7.96 6.22 37.27 0.23 -7.73 16 13 S 2.40 34.27 4.89 -107.50 -0.53 33.74 16 14 O -0.95 -15.50 17.69 -57.81 -1.02 -16.53 16 15 O -0.95 -16.30 18.10 -57.81 -1.05 -17.34 16 16 C -0.54 -7.12 2.63 -26.62 -0.07 -7.19 16 17 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 18 C -0.10 -1.21 4.80 -27.16 -0.13 -1.34 16 19 C -0.10 -1.23 5.89 -27.15 -0.16 -1.39 16 20 C -0.12 -1.68 5.40 -26.74 -0.14 -1.82 16 21 C -0.11 -1.54 4.87 -26.57 -0.13 -1.67 16 22 C 0.10 1.47 2.14 -67.57 -0.14 1.33 16 23 H 0.05 0.82 7.98 -51.93 -0.41 0.40 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H -0.01 -0.17 7.20 -51.93 -0.37 -0.55 16 26 H 0.04 0.90 4.26 -51.93 -0.22 0.68 16 27 H 0.12 2.28 6.11 -51.93 -0.32 1.96 16 28 H 0.04 0.68 7.96 -51.93 -0.41 0.27 16 29 H 0.14 1.78 7.44 -51.93 -0.39 1.39 16 30 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 31 H 0.07 0.82 7.94 -51.92 -0.41 0.40 16 32 H 0.09 1.24 6.55 -51.93 -0.34 0.90 16 33 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.54 6.51 -51.93 -0.34 1.21 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.13 6.23 -51.93 -0.32 0.81 16 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -31.24 292.36 -9.34 -40.58 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.62 Total: 1.79 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -0.98 Total: -26.90 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.12 Total: -35.12 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -2.07 Total: -33.87 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Atomic # 16 Polarization: 34.27 SS G_CDS: -0.53 Total: 33.74 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.24 -9.34 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332734348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.149 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds