Wall clock time and date at job start Mon Mar 30 2020 01:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47133 * 269.99792 * 3 2 1 5 5 H 1.48502 * 109.47011 * 30.00399 * 3 2 1 6 6 H 1.48506 * 109.46978 * 150.00057 * 3 2 1 7 7 C 1.37879 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99813 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99987 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.46173 * 111.38671 * 300.03051 * 10 9 7 12 12 C 1.53210 * 110.29691 * 162.98242 * 11 10 9 13 13 S 1.81810 * 108.56328 * 62.62160 * 12 11 10 14 14 O 1.42107 * 108.68487 * 193.48607 * 13 12 11 15 15 O 1.42092 * 108.79898 * 62.09373 * 13 12 11 16 16 C 1.81666 * 101.12582 * 307.76645 * 13 12 11 17 17 H 1.09002 * 109.56613 * 171.94437 * 16 13 12 18 18 C 1.52941 * 109.91625 * 292.39774 * 16 13 12 19 19 C 1.52215 * 109.66702 * 179.97438 * 18 16 13 20 20 C 1.52959 * 109.76054 * 300.65795 * 19 18 16 21 21 C 1.53017 * 109.62732 * 59.27218 * 20 19 18 22 22 C 1.46637 * 111.00106 * 173.54131 * 10 9 7 23 23 H 1.09003 * 109.62707 * 75.89503 * 22 10 9 24 24 H 0.97006 * 119.99844 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47174 * 60.00295 * 9 7 2 26 26 H 1.08995 * 109.46905 * 299.99527 * 9 7 2 27 27 H 1.09005 * 109.33851 * 42.62486 * 11 10 9 28 28 H 1.08999 * 108.94121 * 283.09677 * 11 10 9 29 29 H 1.08994 * 109.62427 * 302.89342 * 12 11 10 30 30 H 1.09006 * 109.62296 * 182.33978 * 12 11 10 31 31 H 1.09008 * 109.50370 * 300.28787 * 18 16 13 32 32 H 1.09001 * 109.50419 * 60.40332 * 18 16 13 33 33 H 1.09008 * 109.49734 * 180.49655 * 19 18 16 34 34 H 1.08997 * 109.26145 * 60.67359 * 19 18 16 35 35 H 1.08994 * 109.44221 * 299.22419 * 20 19 18 36 36 H 1.09000 * 109.43809 * 179.30486 * 20 19 18 37 37 H 1.08995 * 109.52303 * 59.69263 * 21 20 19 38 38 H 1.08996 * 109.52707 * 179.82627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 3.5361 -3.3089 1.1780 12 6 3.6868 -4.8182 0.9618 13 16 5.4518 -5.1991 0.7494 14 8 5.5746 -6.5211 0.2429 15 8 6.1436 -4.8423 1.9382 16 6 5.9076 -4.0284 -0.5629 17 1 6.9884 -4.0405 -0.7038 18 6 5.2161 -4.4167 -1.8707 19 6 5.6012 -3.4321 -2.9658 20 6 5.1833 -2.0178 -2.5599 21 6 5.8743 -1.6337 -1.2498 22 6 5.4588 -2.6212 -0.1535 23 1 5.9342 -2.3446 0.7876 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8751 -0.6798 -0.8895 27 1 2.4877 -3.0718 1.3589 28 1 4.1303 -3.0051 2.0398 29 1 3.1378 -5.1168 0.0688 30 1 3.2989 -5.3527 1.8290 31 1 5.5215 -5.4226 -2.1591 32 1 4.1352 -4.3894 -1.7329 33 1 5.1001 -3.7062 -3.8942 34 1 6.6807 -3.4631 -3.1138 35 1 4.1025 -1.9839 -2.4237 36 1 5.4725 -1.3156 -3.3419 37 1 6.9553 -1.6717 -1.3834 38 1 5.5778 -0.6246 -0.9638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332734348.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:31 Heat of formation + Delta-G solvation = -87.321828 kcal Electronic energy + Delta-G solvation = -20974.821597 eV Core-core repulsion = 17943.483605 eV Total energy + Delta-G solvation = -3031.337992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81548 -38.17580 -37.12691 -36.75142 -34.71900 -33.10808 -31.69777 -30.78568 -28.31587 -24.81276 -23.91479 -23.60205 -22.27034 -20.20496 -19.47327 -18.92298 -17.88827 -17.54827 -16.79128 -16.74262 -16.35974 -15.96209 -15.66466 -15.20731 -14.59352 -14.38453 -14.32938 -13.94367 -13.64046 -13.46148 -13.26596 -13.12873 -13.07025 -13.01398 -12.80995 -12.44638 -12.33110 -12.31907 -11.95266 -11.84287 -11.49340 -11.35397 -11.23061 -11.02491 -10.75787 -10.57579 -9.09501 -8.24883 -6.26848 -0.92893 1.36465 1.38953 1.47217 1.66319 2.36244 2.64633 2.74899 3.07598 3.12292 3.43766 3.62329 3.83699 3.94386 4.08914 4.23007 4.24667 4.34992 4.40322 4.54000 4.58480 4.78472 4.81078 4.89190 4.99195 5.04223 5.07490 5.14164 5.27046 5.34224 5.37861 5.42248 5.57252 5.73959 5.92319 6.25884 6.58913 6.80273 7.36130 8.90789 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.007291 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.082066 B = 3839.509458 C = 4378.286252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.012 3.988 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.249 1.249 7 C -0.511 4.511 8 H 0.049 0.951 9 C 0.170 3.830 10 N -0.539 5.539 11 C 0.067 3.933 12 C -0.582 4.582 13 S 2.416 3.584 14 O -0.969 6.969 15 O -0.978 6.978 16 C -0.531 4.531 17 H 0.165 0.835 18 C -0.101 4.101 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.111 4.111 22 C 0.090 3.910 23 H 0.056 0.944 24 H 0.264 0.736 25 H -0.014 1.014 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.441 -6.077 -3.718 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.186 4.186 3 Si 0.758 3.242 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.044 3.956 10 N -0.264 5.264 11 C -0.062 4.062 12 C -0.713 4.713 13 S 2.605 3.395 14 O -0.966 6.966 15 O -0.975 6.975 16 C -0.644 4.644 17 H 0.182 0.818 18 C -0.140 4.140 19 C -0.138 4.138 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.020 4.020 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.004 0.996 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.655 -6.873 -3.611 15.708 hybrid contribution -0.564 1.763 0.622 1.953 sum 13.091 -5.110 -2.989 14.367 Atomic orbital electron populations 1.70036 1.08050 1.27865 1.52813 1.25717 0.95397 1.02721 0.94717 0.85913 0.79594 0.79411 0.79285 1.18872 1.21580 1.17276 1.21290 0.90950 0.93381 1.49360 0.93290 1.20073 0.94039 0.85330 0.96133 1.60792 1.09176 1.16706 1.39713 1.21594 1.04017 0.89366 0.91264 1.30120 1.23671 1.04281 1.13269 1.07922 0.78946 0.76091 0.76579 1.93517 1.86256 1.35577 1.81266 1.93515 1.72252 1.85269 1.46470 1.29976 1.11329 1.09334 1.13727 0.81789 1.21217 1.01152 1.00259 0.91333 1.21212 1.01787 0.93508 0.97260 1.21522 1.01131 0.97259 0.96022 1.21743 1.01307 0.97386 0.94481 1.21502 0.88055 0.93212 0.99185 0.92656 0.92652 0.99599 0.92698 0.89052 0.93823 0.83112 0.83162 0.89281 0.90314 0.90850 0.90480 0.92343 0.91449 0.89015 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.45 13.96 21.45 0.30 -56.15 16 2 C 0.01 0.66 5.47 84.66 0.46 1.12 16 3 Si 0.93 41.36 27.47 68.60 1.88 43.24 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.51 -26.76 8.80 25.60 0.23 -26.53 16 8 H 0.05 2.83 7.09 -2.91 -0.02 2.81 16 9 C 0.17 7.17 2.75 85.56 0.23 7.40 16 10 N -0.54 -18.68 2.86 -876.59 -2.50 -21.19 16 11 C 0.07 2.25 5.22 86.51 0.45 2.71 16 12 C -0.58 -15.41 6.22 72.05 0.45 -14.96 16 13 S 2.42 64.36 4.89 -56.49 -0.28 64.08 16 14 O -0.97 -29.52 17.69 -127.39 -2.25 -31.77 16 15 O -0.98 -31.97 18.10 -127.39 -2.31 -34.28 16 16 C -0.53 -12.21 2.63 30.67 0.08 -12.13 16 17 H 0.16 2.79 8.14 -2.39 -0.02 2.77 16 18 C -0.10 -2.24 4.80 30.32 0.15 -2.10 16 19 C -0.10 -2.01 5.89 30.32 0.18 -1.83 16 20 C -0.12 -3.06 5.40 30.59 0.17 -2.90 16 21 C -0.11 -2.79 4.87 30.70 0.15 -2.64 16 22 C 0.09 2.51 2.14 45.15 0.10 2.61 16 23 H 0.06 1.56 7.98 -2.39 -0.02 1.54 16 24 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 25 H -0.01 -0.59 7.20 -2.39 -0.02 -0.61 16 26 H 0.06 2.22 4.26 -2.39 -0.01 2.21 16 27 H 0.09 3.62 6.11 -2.38 -0.01 3.61 16 28 H 0.04 1.43 7.96 -2.39 -0.02 1.42 16 29 H 0.15 3.71 7.44 -2.39 -0.02 3.69 16 30 H 0.15 3.32 8.14 -2.38 -0.02 3.30 16 31 H 0.09 1.70 7.94 -2.38 -0.02 1.68 16 32 H 0.08 1.98 6.55 -2.39 -0.02 1.97 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.88 6.51 -2.39 -0.02 1.86 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.70 6.23 -2.39 -0.01 1.68 16 Total: -1.00 -68.22 292.36 -1.52 -69.74 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.99 Total: 15.58 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 2.64 Total: -49.26 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -2.20 Total: -77.34 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -4.56 Total: -66.05 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.88 Total: 43.24 kcal Atomic # 16 Polarization: 64.36 SS G_CDS: -0.28 Total: 64.08 kcal Total: -68.22 -1.52 -69.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332734348.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -68.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds