Wall clock time and date at job start Mon Mar 30 2020 01:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.46242 * 126.96471 * 2 1 4 4 C 1.39705 * 134.18575 * 359.94979 * 3 2 1 5 5 C 1.36621 * 119.71232 * 180.02562 * 4 3 2 6 6 C 1.38836 * 120.43892 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.74614 * 0.02562 * 6 5 4 8 8 C 1.50706 * 120.07150 * 180.02562 * 7 6 5 9 9 C 1.39025 * 119.85462 * 0.28180 * 7 6 5 10 10 O 1.34721 * 133.24189 * 179.69734 * 9 7 6 11 11 C 1.34946 * 110.85847 * 180.02562 * 10 9 7 12 12 C 1.46984 * 125.12879 * 179.97438 * 11 10 9 13 13 O 1.21653 * 120.00128 * 180.02562 * 12 11 10 14 14 N 1.34780 * 119.99668 * 0.02562 * 12 11 10 15 15 C 1.46503 * 119.99390 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46700 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00249 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00165 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99738 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00314 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47214 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46814 * 120.00032 * 20 18 16 23 23 H 1.48495 * 109.47545 * 240.00134 * 20 18 16 24 24 H 1.09001 * 109.46824 * 90.00537 * 1 2 3 25 25 H 1.09002 * 109.47442 * 210.00363 * 1 2 3 26 26 H 1.09000 * 109.47108 * 330.00933 * 1 2 3 27 27 H 1.08008 * 120.14782 * 0.04607 * 4 3 2 28 28 H 1.07991 * 119.78138 * 179.97438 * 5 4 3 29 29 H 1.07998 * 119.62526 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.46953 * 90.00178 * 8 7 6 31 31 H 1.09000 * 109.47318 * 209.99775 * 8 7 6 32 32 H 1.09000 * 109.47161 * 330.00406 * 8 7 6 33 33 H 0.96998 * 120.00264 * 0.02562 * 14 12 11 34 34 H 1.08998 * 109.47190 * 299.99783 * 15 14 12 35 35 H 1.09000 * 109.47375 * 60.00222 * 15 14 12 36 36 H 0.96998 * 119.99731 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3864 1.1685 0.0000 4 6 2.1715 2.5489 -0.0009 5 6 3.2398 3.4005 -0.0011 6 6 4.5359 2.9030 0.0001 7 6 4.7692 1.5450 0.0009 8 6 6.1824 1.0215 0.0028 9 6 3.6980 0.6588 -0.0053 10 8 3.6125 -0.6857 -0.0113 11 6 2.3235 -1.0852 -0.0165 12 6 1.8715 -2.4838 -0.0243 13 8 0.6820 -2.7386 -0.0289 14 7 2.7750 -3.4839 -0.0263 15 6 2.3245 -4.8779 -0.0346 16 6 3.5219 -5.7928 -0.0346 17 1 4.5189 -5.3775 -0.0294 18 6 3.3449 -7.1602 -0.0413 19 7 2.1309 -7.6660 -0.0482 20 14 4.8292 -8.2942 -0.0420 21 1 6.0725 -7.4823 -0.0340 22 1 4.7939 -9.1565 1.1666 23 1 4.8012 -9.1455 -1.2584 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 1.1652 2.9412 -0.0010 28 1 3.0749 4.4678 -0.0022 29 1 5.3707 3.5882 -0.0006 30 1 6.5219 0.8958 1.0309 31 1 6.2146 0.0605 -0.5105 32 1 6.8329 1.7297 -0.5106 33 1 3.7235 -3.2807 -0.0222 34 1 1.7209 -5.0700 0.8525 35 1 1.7267 -5.0612 -0.9275 36 1 2.0063 -8.6279 -0.0532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334202463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:44 Heat of formation + Delta-G solvation = -45.049745 kcal Electronic energy + Delta-G solvation = -20042.179854 eV Core-core repulsion = 16877.230966 eV Total energy + Delta-G solvation = -3164.948888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.61242 -40.53921 -38.98823 -36.44581 -35.28344 -34.44181 -33.00833 -31.19607 -29.72316 -28.34600 -27.82497 -25.50074 -23.82795 -23.56340 -21.67983 -20.67341 -19.71740 -18.26323 -18.07705 -17.61034 -17.23781 -16.60770 -16.40085 -16.03141 -15.78669 -14.97359 -14.60460 -14.41337 -14.38471 -14.15022 -14.08760 -13.93383 -13.76913 -13.28604 -13.19169 -12.93644 -12.82549 -12.77052 -12.50739 -12.26968 -11.91179 -11.52072 -11.19155 -10.87765 -10.78368 -10.06353 -9.63887 -9.09378 -8.33144 -6.49852 -0.49373 0.33472 0.76418 1.39892 1.42712 1.43010 1.56546 2.02859 2.22166 2.42645 2.67666 3.01880 3.37940 3.48601 3.75991 3.92922 3.98510 4.30384 4.34644 4.39538 4.52105 4.70145 4.75293 4.78373 4.91012 4.91380 4.99303 5.15412 5.16109 5.25617 5.30267 5.39873 5.43771 5.46033 5.50138 5.66624 5.77117 6.04569 6.55562 6.66731 7.05224 7.24590 8.79220 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.004180 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.451123 B = 6697.200111 C = 7795.881594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.083 4.083 3 C -0.157 4.157 4 C -0.070 4.070 5 C -0.128 4.128 6 C -0.077 4.077 7 C -0.093 4.093 8 C -0.113 4.113 9 C 0.042 3.958 10 O -0.195 6.195 11 C -0.058 4.058 12 C 0.581 3.419 13 O -0.558 6.558 14 N -0.694 5.694 15 C 0.265 3.735 16 C -0.561 4.561 17 H 0.079 0.921 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.985 3.015 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.152 0.848 28 H 0.170 0.830 29 H 0.174 0.826 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.407 0.593 34 H -0.001 1.001 35 H -0.001 1.001 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.256 24.642 0.140 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.158 4.158 4 C -0.088 4.088 5 C -0.145 4.145 6 C -0.095 4.095 7 C -0.094 4.094 8 C -0.170 4.170 9 C -0.006 4.006 10 O -0.097 6.097 11 C -0.107 4.107 12 C 0.367 3.633 13 O -0.441 6.441 14 N -0.342 5.342 15 C 0.143 3.857 16 C -0.598 4.598 17 H 0.097 0.903 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.808 3.192 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.201 1.201 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.170 0.830 28 H 0.187 0.813 29 H 0.191 0.809 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.243 0.757 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.562 24.051 0.134 24.686 hybrid contribution 0.479 -1.256 -0.005 1.344 sum 6.041 22.795 0.129 23.582 Atomic orbital electron populations 1.20449 0.86468 1.04031 1.03547 1.21765 0.97880 0.89733 0.99248 1.20008 0.91513 0.95325 1.08935 1.20706 1.01794 0.88809 0.97517 1.21250 0.91341 1.01616 1.00315 1.21411 0.99090 0.92349 0.96615 1.19298 0.93546 0.91946 1.04585 1.20799 0.91065 1.01756 1.03338 1.20188 0.96678 0.80632 1.03088 1.83963 1.26604 1.22155 1.77017 1.21626 0.81992 0.94192 1.12891 1.17084 0.85863 0.82696 0.77614 1.90767 1.16576 1.83298 1.53413 1.46224 1.09883 1.07041 1.71019 1.18741 0.95709 0.76155 0.95081 1.21586 0.92933 0.91813 1.53513 0.90291 1.26023 0.99732 0.99821 0.93613 1.70124 1.23312 1.13479 1.49576 0.85099 0.78247 0.77894 0.77923 1.18052 1.20137 1.20130 0.89873 0.91380 0.88325 0.83014 0.81253 0.80904 0.90295 0.92897 0.88236 0.75729 0.98268 0.98259 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.50 9.79 71.24 0.70 -1.81 16 2 C -0.08 -2.73 6.39 -18.34 -0.12 -2.85 16 3 C -0.16 -4.36 6.37 -20.24 -0.13 -4.49 16 4 C -0.07 -1.33 10.06 22.25 0.22 -1.11 16 5 C -0.13 -1.73 9.98 22.03 0.22 -1.51 16 6 C -0.08 -1.11 9.66 22.31 0.22 -0.89 16 7 C -0.09 -2.00 5.89 -19.78 -0.12 -2.12 16 8 C -0.11 -1.97 10.02 71.24 0.71 -1.25 16 9 C 0.04 1.24 7.07 23.07 0.16 1.40 16 10 O -0.19 -6.93 10.28 -13.04 -0.13 -7.06 16 11 C -0.06 -2.22 7.07 24.00 0.17 -2.05 16 12 C 0.58 26.60 7.79 86.53 0.67 27.27 16 13 O -0.56 -28.34 14.63 -4.20 -0.06 -28.40 16 14 N -0.69 -32.87 5.54 -470.53 -2.61 -35.48 16 15 C 0.26 15.00 5.43 85.63 0.46 15.47 16 16 C -0.56 -31.49 9.28 25.60 0.24 -31.25 16 17 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 18 C 0.01 0.46 5.46 84.66 0.46 0.92 16 19 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 20 Si 0.99 43.00 29.54 68.60 2.03 45.02 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.07 2.29 6.41 -2.39 -0.02 2.28 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.17 0.99 8.06 -2.92 -0.02 0.96 16 29 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.11 8.09 -2.39 -0.02 1.09 16 32 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.41 17.31 8.04 -92.71 -0.74 16.57 16 34 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -72.51 316.27 3.75 -68.76 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.36 Total: 17.07 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 3.88 Total: -4.26 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -2.32 Total: -91.14 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.20 Total: -35.46 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.51 3.75 -68.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334202463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.715 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds