Wall clock time and date at job start Mon Mar 30 2020 01:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.46206 * 126.96700 * 2 1 4 4 C 1.39726 * 134.17483 * 359.93634 * 3 2 1 5 5 C 1.36625 * 119.70982 * 180.02562 * 4 3 2 6 6 C 1.38842 * 120.43843 * 359.97438 * 5 4 3 7 7 C 1.37814 * 120.74739 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.07171 * 179.97438 * 7 6 5 9 9 C 1.39004 * 119.86245 * 0.25471 * 7 6 5 10 10 O 1.34741 * 133.22997 * 179.72397 * 9 7 6 11 11 C 1.34947 * 110.86565 * 180.02562 * 10 9 7 12 12 C 1.46799 * 125.14557 * 179.97438 * 11 10 9 13 13 O 1.21707 * 120.00359 * 170.08946 * 12 11 10 14 14 N 1.34779 * 120.00263 * 350.09226 * 12 11 10 15 15 C 1.46497 * 120.00656 * 186.11897 * 14 12 11 16 16 C 1.36791 * 119.99630 * 6.12406 * 14 12 11 17 17 H 1.08006 * 119.99614 * 313.99937 * 16 14 12 18 18 C 1.39072 * 120.00197 * 134.00852 * 16 14 12 19 19 N 1.31349 * 119.99807 * 351.80820 * 18 16 14 20 20 Si 1.86798 * 120.00072 * 171.81197 * 18 16 14 21 21 H 1.48500 * 109.47222 * 59.99484 * 20 18 16 22 22 H 1.48500 * 109.47147 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47129 * 299.99480 * 20 18 16 24 24 H 1.08991 * 109.47138 * 90.00126 * 1 2 3 25 25 H 1.09000 * 109.47154 * 210.00436 * 1 2 3 26 26 H 1.09003 * 109.46871 * 330.00056 * 1 2 3 27 27 H 1.08000 * 120.15022 * 0.05551 * 4 3 2 28 28 H 1.07998 * 119.77994 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.62455 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47274 * 89.99975 * 8 7 6 31 31 H 1.09002 * 109.47003 * 329.99879 * 8 7 6 32 32 H 1.08996 * 109.47432 * 210.00173 * 8 7 6 33 33 H 1.09011 * 109.46931 * 357.98470 * 15 14 12 34 34 H 1.08998 * 109.47421 * 117.97599 * 15 14 12 35 35 H 1.09002 * 109.47513 * 237.98755 * 15 14 12 36 36 H 0.97006 * 120.00167 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1682 0.0000 4 6 2.1710 2.5488 -0.0011 5 6 3.2393 3.4005 -0.0013 6 6 4.5355 2.9031 0.0002 7 6 4.7690 1.5449 0.0013 8 6 6.1822 1.0216 0.0023 9 6 3.6982 0.6585 -0.0044 10 8 3.6133 -0.6862 -0.0097 11 6 2.3246 -1.0864 -0.0146 12 6 1.8736 -2.4834 -0.0216 13 8 0.6981 -2.7443 0.1558 14 7 2.7612 -3.4771 -0.2243 15 6 2.2947 -4.8587 -0.3652 16 6 4.0978 -3.1957 -0.2986 17 1 4.4426 -2.3678 -0.9003 18 6 5.0125 -3.9757 0.4007 19 7 4.5881 -4.8775 1.2562 20 14 6.8448 -3.7407 0.1233 21 1 7.2232 -2.3471 0.4693 22 1 7.6009 -4.6864 0.9831 23 1 7.1671 -4.0017 -1.3026 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.1648 2.9409 -0.0014 28 1 3.0743 4.4678 -0.0017 29 1 5.3703 3.5884 -0.0003 30 1 6.5225 0.8962 1.0302 31 1 6.8322 1.7297 -0.5118 32 1 6.2142 0.0605 -0.5108 33 1 1.2119 -4.8908 -0.2429 34 1 2.5598 -5.2327 -1.3540 35 1 2.7649 -5.4805 0.3967 36 1 5.2261 -5.4213 1.7442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334247277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:46 Heat of formation + Delta-G solvation = -24.759580 kcal Electronic energy + Delta-G solvation = -21207.280106 eV Core-core repulsion = 18043.211065 eV Total energy + Delta-G solvation = -3164.069041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.36205 -40.35666 -38.82211 -36.98017 -35.09646 -33.61895 -32.88371 -30.98587 -29.08570 -28.08284 -27.71088 -26.52036 -23.90716 -23.41434 -21.34974 -20.52252 -19.67832 -18.45712 -17.66262 -17.28712 -16.80098 -16.61311 -16.29526 -15.71304 -15.63209 -14.89171 -14.51424 -14.38101 -14.24253 -14.01383 -13.86983 -13.63749 -13.28337 -13.16343 -13.08481 -13.00739 -12.80954 -12.73984 -12.51264 -12.39813 -12.14010 -11.77829 -11.19458 -10.74234 -10.61765 -9.62480 -9.46972 -8.92800 -8.34314 -6.28864 -0.28861 0.46013 0.92089 1.38650 1.42368 1.49812 1.79815 2.21618 2.32973 2.77007 2.79136 3.01222 3.63824 3.64500 3.95800 4.03595 4.20539 4.37970 4.46095 4.49437 4.57949 4.71926 4.73659 4.78150 4.80823 4.83890 4.96081 5.05929 5.20201 5.23366 5.32227 5.48237 5.50835 5.53561 5.56780 5.81764 5.88491 6.23563 6.32638 6.96499 7.30394 7.73672 8.63068 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.008430 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.258353 B = 3320.689169 C = 4911.328356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.127 4.127 3 C -0.152 4.152 4 C -0.075 4.075 5 C -0.129 4.129 6 C -0.084 4.084 7 C -0.096 4.096 8 C -0.112 4.112 9 C 0.018 3.982 10 O -0.170 6.170 11 C -0.020 4.020 12 C 0.525 3.475 13 O -0.602 6.602 14 N -0.437 5.437 15 C 0.083 3.917 16 C -0.353 4.353 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.894 5.894 20 Si 0.983 3.017 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.261 1.261 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.151 0.849 28 H 0.171 0.829 29 H 0.172 0.828 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 15.340 -2.765 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C -0.153 4.153 4 C -0.093 4.093 5 C -0.146 4.146 6 C -0.102 4.102 7 C -0.096 4.096 8 C -0.168 4.168 9 C -0.030 4.030 10 O -0.071 6.071 11 C -0.070 4.070 12 C 0.315 3.685 13 O -0.491 6.491 14 N -0.153 5.153 15 C -0.060 4.060 16 C -0.481 4.481 17 H 0.111 0.889 18 C -0.195 4.195 19 N -0.530 5.530 20 Si 0.805 3.195 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.185 1.185 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.168 0.832 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.898 14.773 -2.560 15.112 hybrid contribution 0.612 -0.835 0.069 1.038 sum 2.510 13.938 -2.491 14.379 Atomic orbital electron populations 1.20311 0.86572 1.03601 1.02930 1.21686 0.97797 0.89580 1.03967 1.20050 0.91534 0.95382 1.08321 1.20660 1.01580 0.88776 0.98324 1.21191 0.91225 1.01408 1.00806 1.21319 0.99102 0.92024 0.97748 1.19253 0.93248 0.92261 1.04860 1.20770 0.91811 1.01421 1.02848 1.20540 0.96812 0.82322 1.03355 1.84551 1.26914 1.20420 1.75212 1.21912 0.81646 0.94835 1.08608 1.17551 0.85935 0.83510 0.81499 1.90606 1.17843 1.83031 1.57586 1.43495 1.06541 1.06016 1.59225 1.21725 0.98758 0.83791 1.01692 1.19693 0.80791 1.17492 1.30101 0.88945 1.26432 1.05007 0.95181 0.92873 1.69849 1.37162 1.22325 1.23687 0.85151 0.76290 0.79058 0.78998 1.18433 1.19989 1.18535 0.90489 0.91450 0.88994 0.83164 0.81182 0.81091 0.91034 0.87840 0.93779 0.92250 0.92960 0.90029 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.72 9.92 71.24 0.71 -2.01 16 2 C -0.13 -5.31 6.39 -18.32 -0.12 -5.42 16 3 C -0.15 -5.58 6.37 -20.23 -0.13 -5.71 16 4 C -0.08 -1.97 10.06 22.25 0.22 -1.75 16 5 C -0.13 -2.61 9.98 22.04 0.22 -2.39 16 6 C -0.08 -1.85 9.67 22.31 0.22 -1.64 16 7 C -0.10 -2.97 5.89 -19.78 -0.12 -3.09 16 8 C -0.11 -3.12 10.02 71.24 0.71 -2.41 16 9 C 0.02 0.73 7.07 23.07 0.16 0.89 16 10 O -0.17 -8.31 7.49 -13.24 -0.10 -8.41 16 11 C -0.02 -1.00 6.77 23.98 0.16 -0.83 16 12 C 0.53 28.77 7.58 86.48 0.66 29.42 16 13 O -0.60 -33.43 13.97 -4.37 -0.06 -33.49 16 14 N -0.44 -24.23 2.87 -663.33 -1.90 -26.13 16 15 C 0.08 4.21 10.16 127.77 1.30 5.50 16 16 C -0.35 -19.46 7.77 84.12 0.65 -18.81 16 17 H 0.09 5.10 6.15 -2.91 -0.02 5.08 16 18 C 0.01 0.47 5.29 84.97 0.45 0.92 16 19 N -0.89 -49.32 11.25 21.68 0.24 -49.08 16 20 Si 0.98 41.04 29.56 68.60 2.03 43.07 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 24 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.07 2.70 6.25 -2.39 -0.01 2.69 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 28 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.10 2.03 8.09 -2.39 -0.02 2.01 16 32 H 0.04 1.46 8.09 -2.39 -0.02 1.44 16 33 H 0.06 2.91 6.91 -2.38 -0.02 2.89 16 34 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.08 4.36 5.89 -2.39 -0.01 4.35 16 36 H 0.28 14.20 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -69.28 305.81 6.41 -62.87 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.10 Total: 18.50 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.10 Total: -7.32 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -1.66 Total: -75.21 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.16 Total: -41.90 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -69.28 6.41 -62.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334247277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.112 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds