Wall clock time and date at job start Mon Mar 30 2020 01:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00255 * 2 1 4 4 H 1.48502 * 109.46899 * 270.00153 * 3 2 1 5 5 H 1.48502 * 109.46592 * 29.99951 * 3 2 1 6 6 H 1.48497 * 109.47287 * 150.00130 * 3 2 1 7 7 C 1.37883 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47311 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47180 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54464 * 68.38031 * 11 10 9 13 13 O 1.42093 * 110.54571 * 291.62412 * 11 10 9 14 14 N 1.65602 * 104.44731 * 180.02562 * 11 10 9 15 15 C 1.47450 * 125.61705 * 90.02674 * 14 11 10 16 16 C 1.54895 * 104.93008 * 203.89685 * 15 14 11 17 17 C 1.55318 * 101.60434 * 322.68304 * 16 15 14 18 18 H 1.08999 * 113.04396 * 158.12727 * 17 16 15 19 19 C 1.53729 * 108.05975 * 284.62444 * 17 16 15 20 20 C 1.53449 * 107.50742 * 125.74525 * 19 17 16 21 21 C 1.53582 * 107.23028 * 0.57745 * 20 19 17 22 22 C 1.46932 * 125.76323 * 270.04766 * 14 11 10 23 23 H 1.09001 * 110.89789 * 58.15069 * 22 14 11 24 24 H 0.96993 * 120.00014 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47457 * 59.99981 * 9 7 2 26 26 H 1.09000 * 109.47264 * 299.99832 * 9 7 2 27 27 H 1.09003 * 109.46732 * 59.99713 * 10 9 7 28 28 H 1.09000 * 109.46963 * 300.00192 * 10 9 7 29 29 H 1.09002 * 110.36769 * 85.00061 * 15 14 11 30 30 H 1.08995 * 110.36500 * 322.78920 * 15 14 11 31 31 H 1.08995 * 111.00569 * 80.76449 * 16 15 14 32 32 H 1.08998 * 110.99938 * 204.60452 * 16 15 14 33 33 H 1.08998 * 109.84391 * 245.23367 * 19 17 16 34 34 H 1.08998 * 109.84660 * 6.25872 * 19 17 16 35 35 H 1.08988 * 109.88651 * 241.17036 * 20 19 17 36 36 H 1.08999 * 110.01819 * 120.05905 * 20 19 17 37 37 H 1.09002 * 110.10771 * 223.09135 * 21 20 19 38 38 H 1.08997 * 110.10772 * 101.46485 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 16 1.3382 -5.2330 -0.0034 12 8 0.6639 -5.4190 -1.2403 13 8 0.6646 -5.4205 1.2336 14 7 2.5204 -6.3927 -0.0038 15 6 3.1329 -6.9949 1.1947 16 6 4.5177 -7.5035 0.7224 17 6 4.1916 -8.0151 -0.7074 18 1 5.0686 -8.0663 -1.3526 19 6 3.4475 -9.3539 -0.5763 20 6 2.1335 -9.2303 -1.3593 21 6 2.0991 -7.8219 -1.9707 22 6 3.1342 -6.9929 -1.1962 23 1 3.5912 -6.2286 -1.8247 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 2.8719 -3.6051 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 2.5260 -7.8259 1.5541 30 1 3.2508 -6.2457 1.9775 31 1 5.2425 -6.6901 0.6903 32 1 4.8725 -8.3159 1.3565 33 1 4.0538 -10.1568 -0.9955 34 1 3.2350 -9.5580 0.4731 35 1 1.2869 -9.3631 -0.6859 36 1 2.0988 -9.9791 -2.1505 37 1 1.1067 -7.3866 -1.8534 38 1 2.3674 -7.8650 -3.0263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334662450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:30 Heat of formation + Delta-G solvation = -87.444172 kcal Electronic energy + Delta-G solvation = -19994.773458 eV Core-core repulsion = 16963.430161 eV Total energy + Delta-G solvation = -3031.343297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96630 -36.60189 -35.41260 -34.03466 -33.88181 -31.56218 -31.14514 -28.07262 -26.66245 -25.56623 -22.30754 -21.45487 -20.77430 -19.97252 -18.30980 -17.41852 -16.74987 -16.05403 -15.44679 -15.21637 -14.86355 -14.54910 -14.21828 -13.95925 -13.66661 -13.30938 -12.83262 -12.50878 -12.00827 -11.74955 -11.69833 -11.55682 -11.48904 -11.35221 -11.13284 -11.08190 -11.03628 -10.96072 -10.77878 -10.67764 -10.39800 -10.37312 -10.26329 -9.75062 -9.30805 -8.68535 -8.50199 -6.12214 -4.17819 0.77065 3.08703 3.26130 3.32242 3.35117 4.16974 4.29274 4.34827 4.39051 4.58294 4.74221 4.95560 5.07073 5.21231 5.22938 5.32648 5.38700 5.45474 5.58795 5.64736 5.65316 5.71568 5.73000 5.80408 5.88799 5.95010 6.00701 6.08949 6.25220 6.39169 6.43382 6.50425 6.63876 7.30247 7.36465 7.80759 8.18022 8.85538 9.46893 10.98890 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034377 B = 0.004714 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.298272 B = 5937.893429 C = 6168.767234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.606 3.394 12 O -0.960 6.960 13 O -0.963 6.963 14 N -1.011 6.011 15 C 0.124 3.876 16 C -0.128 4.128 17 C -0.098 4.098 18 H 0.096 0.904 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.149 4.149 22 C 0.153 3.847 23 H 0.080 0.920 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.826 -17.657 -0.931 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.705 3.295 12 O -0.950 6.950 13 O -0.954 6.954 14 N -0.847 5.847 15 C -0.002 4.002 16 C -0.167 4.167 17 C -0.117 4.117 18 H 0.115 0.885 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.187 4.187 22 C 0.047 3.953 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.642 -17.698 -0.911 19.716 hybrid contribution 1.032 1.305 0.005 1.664 sum 9.674 -16.393 -0.905 19.056 Atomic orbital electron populations 1.69953 1.06127 1.27202 1.49592 1.25070 0.94967 0.99535 0.94892 0.86467 0.79709 0.82849 0.78243 1.20449 1.20981 1.19766 1.21003 0.93048 0.89771 1.52130 0.92074 1.18963 0.92716 0.90611 0.98819 1.30499 1.13728 1.18182 1.09921 1.05310 0.74252 0.75846 0.74058 1.93505 1.71162 1.85037 1.45314 1.93534 1.71045 1.85258 1.45544 1.58869 1.58522 1.55213 1.12139 1.21904 0.93087 0.97936 0.87258 1.22947 0.96763 1.01018 0.95938 1.22855 0.97590 0.94526 0.96768 0.88540 1.22053 0.96119 0.96458 1.00733 1.21910 0.97529 0.97121 0.99216 1.22618 1.01763 0.95082 0.99287 1.21701 0.92793 0.94635 0.86182 0.90178 0.92521 0.94860 0.94910 0.86403 0.86334 0.91616 0.90800 0.90618 0.90192 0.91969 0.91475 0.92108 0.92013 0.88817 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.59 -11.62 6.12 37.16 0.23 -11.39 16 11 S 2.61 48.50 5.62 -107.50 -0.60 47.89 16 12 O -0.96 -19.94 15.32 -57.54 -0.88 -20.82 16 13 O -0.96 -20.63 17.60 -57.54 -1.01 -21.65 16 14 N -1.01 -14.34 3.31 -103.79 -0.34 -14.69 16 15 C 0.12 1.45 6.43 -2.52 -0.02 1.43 16 16 C -0.13 -1.12 6.31 -24.50 -0.15 -1.27 16 17 C -0.10 -0.89 4.17 -87.96 -0.37 -1.25 16 18 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.12 -1.02 5.97 -26.12 -0.16 -1.17 16 20 C -0.12 -1.25 6.78 -26.20 -0.18 -1.43 16 21 C -0.15 -1.87 6.23 -26.13 -0.16 -2.03 16 22 C 0.15 1.86 3.71 -66.35 -0.25 1.61 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 28 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 29 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.56 7.95 -51.93 -0.41 0.14 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.58 6.76 -51.93 -0.35 0.23 16 35 H 0.06 0.68 8.14 -51.94 -0.42 0.26 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.46 5.76 -51.93 -0.30 1.16 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -33.84 312.94 -10.08 -43.92 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.07 Total: -1.48 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -1.60 Total: -28.22 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.39 Total: -40.64 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.89 Total: -42.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.60 Total: 47.89 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.84 -10.08 -43.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334662450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.527 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds