Wall clock time and date at job start Mon Mar 30 2020 01:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00255 * 2 1 4 4 H 1.48502 * 109.46899 * 270.00153 * 3 2 1 5 5 H 1.48502 * 109.46592 * 29.99951 * 3 2 1 6 6 H 1.48497 * 109.47287 * 150.00130 * 3 2 1 7 7 C 1.37883 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99964 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47311 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47180 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54464 * 68.38031 * 11 10 9 13 13 O 1.42093 * 110.54571 * 291.62412 * 11 10 9 14 14 N 1.65602 * 104.44731 * 180.02562 * 11 10 9 15 15 C 1.47450 * 125.61705 * 90.02674 * 14 11 10 16 16 C 1.54895 * 104.93008 * 203.89685 * 15 14 11 17 17 C 1.55318 * 101.60434 * 322.68304 * 16 15 14 18 18 H 1.08999 * 113.04396 * 158.12727 * 17 16 15 19 19 C 1.53729 * 108.05975 * 284.62444 * 17 16 15 20 20 C 1.53449 * 107.50742 * 125.74525 * 19 17 16 21 21 C 1.53582 * 107.23028 * 0.57745 * 20 19 17 22 22 C 1.46932 * 125.76323 * 270.04766 * 14 11 10 23 23 H 1.09001 * 110.89789 * 58.15069 * 22 14 11 24 24 H 0.96993 * 120.00014 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47457 * 59.99981 * 9 7 2 26 26 H 1.09000 * 109.47264 * 299.99832 * 9 7 2 27 27 H 1.09003 * 109.46732 * 59.99713 * 10 9 7 28 28 H 1.09000 * 109.46963 * 300.00192 * 10 9 7 29 29 H 1.09002 * 110.36769 * 85.00061 * 15 14 11 30 30 H 1.08995 * 110.36500 * 322.78920 * 15 14 11 31 31 H 1.08995 * 111.00569 * 80.76449 * 16 15 14 32 32 H 1.08998 * 110.99938 * 204.60452 * 16 15 14 33 33 H 1.08998 * 109.84391 * 245.23367 * 19 17 16 34 34 H 1.08998 * 109.84660 * 6.25872 * 19 17 16 35 35 H 1.08988 * 109.88651 * 241.17036 * 20 19 17 36 36 H 1.08999 * 110.01819 * 120.05905 * 20 19 17 37 37 H 1.09002 * 110.10771 * 223.09135 * 21 20 19 38 38 H 1.08997 * 110.10772 * 101.46485 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 16 1.3382 -5.2330 -0.0034 12 8 0.6639 -5.4190 -1.2403 13 8 0.6646 -5.4205 1.2336 14 7 2.5204 -6.3927 -0.0038 15 6 3.1329 -6.9949 1.1947 16 6 4.5177 -7.5035 0.7224 17 6 4.1916 -8.0151 -0.7074 18 1 5.0686 -8.0663 -1.3526 19 6 3.4475 -9.3539 -0.5763 20 6 2.1335 -9.2303 -1.3593 21 6 2.0991 -7.8219 -1.9707 22 6 3.1342 -6.9929 -1.1962 23 1 3.5912 -6.2286 -1.8247 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 2.8719 -3.6051 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 2.5260 -7.8259 1.5541 30 1 3.2508 -6.2457 1.9775 31 1 5.2425 -6.6901 0.6903 32 1 4.8725 -8.3159 1.3565 33 1 4.0538 -10.1568 -0.9955 34 1 3.2350 -9.5580 0.4731 35 1 1.2869 -9.3631 -0.6859 36 1 2.0988 -9.9791 -2.1505 37 1 1.1067 -7.3866 -1.8534 38 1 2.3674 -7.8650 -3.0263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334662450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:29 Heat of formation + Delta-G solvation = -110.728793 kcal Electronic energy + Delta-G solvation = -19995.783155 eV Core-core repulsion = 16963.430161 eV Total energy + Delta-G solvation = -3032.352994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83231 -38.21484 -37.03558 -35.92418 -34.96619 -33.15468 -32.44111 -28.93554 -27.71222 -27.40882 -23.76187 -22.85069 -21.78412 -20.75361 -19.74454 -18.88563 -18.34375 -17.39724 -16.98069 -16.67177 -16.46411 -15.76016 -15.31591 -15.05292 -14.80729 -14.60153 -14.43693 -13.84825 -13.75761 -13.25021 -13.18044 -12.94978 -12.84485 -12.80491 -12.37843 -12.34204 -12.27534 -12.15341 -12.07804 -11.87934 -11.75616 -11.57588 -11.47815 -11.15643 -11.05583 -10.66993 -9.86916 -8.28071 -6.42899 -0.74624 1.39676 1.41984 1.53197 1.75669 2.36765 2.83420 3.04846 3.06743 3.42421 3.66863 3.78355 3.99755 4.06847 4.18215 4.27382 4.41237 4.50254 4.62267 4.67970 4.70454 4.79349 4.84454 4.88882 5.06548 5.12997 5.16050 5.20781 5.22861 5.24710 5.28341 5.40372 5.49657 5.57249 5.64993 5.65627 6.03322 6.70514 7.27587 8.84404 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034377 B = 0.004714 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.298272 B = 5937.893429 C = 6168.767234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.587 4.587 11 S 2.628 3.372 12 O -0.987 6.987 13 O -0.997 6.997 14 N -1.005 6.005 15 C 0.108 3.892 16 C -0.117 4.117 17 C -0.086 4.086 18 H 0.125 0.875 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.157 4.157 22 C 0.137 3.863 23 H 0.088 0.912 24 H 0.268 0.732 25 H 0.005 0.995 26 H 0.004 0.996 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.233 -18.603 -0.991 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.579 4.579 8 H 0.094 0.906 9 C -0.018 4.018 10 C -0.719 4.719 11 S 2.727 3.273 12 O -0.977 6.977 13 O -0.987 6.987 14 N -0.844 5.844 15 C -0.017 4.017 16 C -0.155 4.155 17 C -0.106 4.106 18 H 0.142 0.858 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.196 4.196 22 C 0.031 3.969 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.055 -18.642 -0.969 22.221 hybrid contribution -0.061 1.501 0.002 1.502 sum 11.993 -17.141 -0.967 20.943 Atomic orbital electron populations 1.70105 1.08162 1.28417 1.50770 1.26150 0.95865 1.03984 0.94222 0.85277 0.78622 0.77426 0.78713 1.19479 1.20732 1.18082 1.21505 0.93959 0.90729 1.51746 0.90627 1.18817 0.93588 0.93197 0.96187 1.30391 1.12789 1.16773 1.11965 1.04291 0.74460 0.75868 0.72708 1.93471 1.72539 1.85429 1.46307 1.93481 1.72561 1.85785 1.46903 1.58454 1.57987 1.53635 1.14321 1.22264 0.95022 0.97982 0.86414 1.22962 0.94638 1.02093 0.95845 1.22921 0.97274 0.93176 0.97248 0.85753 1.22072 0.95171 0.97144 1.00718 1.21926 0.98247 0.96124 0.99570 1.22655 0.99930 0.96394 1.00587 1.22091 0.93577 0.95675 0.85509 0.89400 0.92325 0.97627 0.97750 0.84360 0.84248 0.91574 0.90669 0.89627 0.87554 0.89585 0.91255 0.93834 0.90474 0.92607 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.98 43.57 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.02 1.13 4.98 29.85 0.15 1.28 16 10 C -0.59 -23.26 6.12 71.98 0.44 -22.82 16 11 S 2.63 100.50 5.62 -56.49 -0.32 100.19 16 12 O -0.99 -42.89 15.32 -127.65 -1.96 -44.84 16 13 O -1.00 -44.31 17.60 -127.65 -2.25 -46.56 16 14 N -1.00 -27.67 3.31 -482.27 -1.60 -29.26 16 15 C 0.11 2.31 6.43 86.85 0.56 2.87 16 16 C -0.12 -1.57 6.31 32.04 0.20 -1.37 16 17 C -0.09 -1.23 4.17 -9.07 -0.04 -1.27 16 18 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 19 C -0.11 -1.59 5.97 30.99 0.18 -1.41 16 20 C -0.12 -2.34 6.78 30.94 0.21 -2.13 16 21 C -0.16 -3.83 6.23 30.98 0.19 -3.64 16 22 C 0.14 3.07 3.71 45.78 0.17 3.24 16 23 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.00 0.24 8.14 -2.39 -0.02 0.23 16 27 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 28 H 0.14 4.86 8.14 -2.39 -0.02 4.84 16 29 H 0.07 1.42 7.48 -2.39 -0.02 1.40 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 0.95 7.95 -2.39 -0.02 0.93 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.96 6.76 -2.39 -0.02 0.94 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.80 5.76 -2.39 -0.01 1.79 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.99 312.94 -0.01 -76.00 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.03 Total: 11.55 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 2.76 Total: -55.28 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.31 Total: -86.66 kcal Atomic # 8 Polarization: -87.20 SS G_CDS: -4.20 Total: -91.40 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 100.50 SS G_CDS: -0.32 Total: 100.19 kcal Total: -75.99 -0.01 -76.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334662450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.724 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds