Wall clock time and date at job start Mon Mar 30 2020 01:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46917 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54225 * 291.62561 * 11 10 9 13 13 O 1.42101 * 110.54313 * 68.37302 * 11 10 9 14 14 N 1.65595 * 104.45050 * 179.97438 * 11 10 9 15 15 C 1.49320 * 127.11275 * 90.02648 * 14 11 10 16 16 C 1.56092 * 106.55585 * 187.17748 * 15 14 11 17 17 C 1.52821 * 101.25963 * 23.79725 * 16 15 14 18 18 H 1.08997 * 112.46228 * 78.19570 * 17 16 15 19 19 C 1.52568 * 119.40538 * 213.19689 * 17 16 15 20 20 C 1.56031 * 102.46784 * 148.40225 * 19 17 16 21 21 C 1.55883 * 105.89048 * 334.54316 * 20 19 17 22 22 C 1.41769 * 127.11648 * 269.71117 * 14 11 10 23 23 H 1.09002 * 105.74179 * 253.34109 * 22 14 11 24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 26 26 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 27 27 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 28 28 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 29 29 H 1.09006 * 110.04117 * 306.45013 * 15 14 11 30 30 H 1.09000 * 110.04607 * 67.85284 * 15 14 11 31 31 H 1.09003 * 111.05968 * 141.79076 * 16 15 14 32 32 H 1.08998 * 111.06236 * 265.79796 * 16 15 14 33 33 H 1.09000 * 110.81206 * 266.64251 * 19 17 16 34 34 H 1.09001 * 110.80947 * 29.96533 * 19 17 16 35 35 H 1.08992 * 110.16896 * 93.64738 * 20 19 17 36 36 H 1.09007 * 110.16569 * 215.44097 * 20 19 17 37 37 H 1.09000 * 110.48586 * 113.52462 * 21 20 19 38 38 H 1.09008 * 110.48545 * 236.02960 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 16 1.3383 -5.2331 -0.0115 12 8 0.6694 -5.4221 1.2278 13 8 0.6593 -5.4173 -1.2461 14 7 2.5205 -6.3927 -0.0193 15 6 3.1685 -7.0266 1.1673 16 6 4.3339 -7.9087 0.6192 17 6 4.6174 -7.2300 -0.7203 18 1 5.2002 -6.3156 -0.6087 19 6 5.0787 -8.0737 -1.9048 20 6 4.4757 -7.3048 -3.1212 21 6 3.2388 -6.5338 -2.5682 22 6 3.1221 -6.9934 -1.1537 23 1 2.7165 -8.0039 -1.2033 24 1 -0.4850 -0.8400 0.0004 25 1 0.6281 -2.5591 0.8866 26 1 0.6207 -2.5548 -0.8933 27 1 2.8685 -3.6024 -0.9044 28 1 2.8753 -3.6063 0.8755 29 1 3.5627 -6.2583 1.8326 30 1 2.4477 -7.6472 1.6996 31 1 5.2034 -7.8604 1.2748 32 1 4.0105 -8.9397 0.4754 33 1 6.1669 -8.0976 -1.9628 34 1 4.6736 -9.0837 -1.8419 35 1 5.2070 -6.6033 -3.5224 36 1 4.1653 -8.0082 -3.8940 37 1 3.4099 -5.4581 -2.6098 38 1 2.3423 -6.7985 -3.1290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334662451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:31 Heat of formation + Delta-G solvation = -100.244257 kcal Electronic energy + Delta-G solvation = -19965.352797 eV Core-core repulsion = 16933.454446 eV Total energy + Delta-G solvation = -3031.898350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21199 -38.34021 -37.18350 -36.35778 -35.83586 -33.04180 -32.37105 -28.34047 -27.86403 -27.15270 -24.15370 -22.94043 -21.93890 -21.22019 -19.83654 -19.14847 -18.13848 -17.82708 -17.43941 -16.69566 -15.77916 -15.68032 -15.55906 -15.36454 -14.96903 -14.86960 -14.16636 -14.05939 -13.78395 -13.42672 -13.31261 -13.24101 -12.97794 -12.89336 -12.68756 -12.52053 -12.34465 -12.14018 -12.05882 -11.91329 -11.65697 -11.50244 -11.38093 -11.22471 -10.81251 -10.65741 -9.83011 -8.79200 -6.53714 -0.89919 1.51239 1.56109 1.60117 1.79645 2.52173 2.67647 2.95667 2.99806 3.05641 3.69100 3.73554 3.78605 3.91945 4.01397 4.18505 4.23441 4.38789 4.43873 4.51218 4.58140 4.61004 4.74594 4.79352 4.93361 4.95858 5.02133 5.03256 5.13881 5.16744 5.23392 5.30283 5.34947 5.56243 5.67791 5.76409 6.02565 6.39530 7.29728 8.60198 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024119 B = 0.005138 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.611114 B = 5448.532723 C = 5823.487888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.040 4.040 3 Si 1.124 2.876 4 H -0.283 1.283 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.615 4.615 8 H 0.067 0.933 9 C 0.006 3.994 10 C -0.581 4.581 11 S 2.624 3.376 12 O -0.992 6.992 13 O -0.987 6.987 14 N -0.992 5.992 15 C 0.109 3.891 16 C -0.106 4.106 17 C -0.115 4.115 18 H 0.093 0.907 19 C -0.104 4.104 20 C -0.110 4.110 21 C -0.128 4.128 22 C 0.107 3.893 23 H 0.053 0.947 24 H 0.254 0.746 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.163 -17.997 -2.020 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.238 4.238 3 Si 0.943 3.057 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.653 4.653 8 H 0.085 0.915 9 C -0.033 4.033 10 C -0.713 4.713 11 S 2.723 3.277 12 O -0.983 6.983 13 O -0.977 6.977 14 N -0.829 5.829 15 C -0.014 4.014 16 C -0.144 4.144 17 C -0.135 4.135 18 H 0.111 0.889 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.167 4.167 22 C -0.001 4.001 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.021 0.979 26 H 0.020 0.980 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.915 -16.540 -1.993 21.706 hybrid contribution -0.231 -1.075 0.014 1.099 sum 13.684 -17.615 -1.978 22.393 Atomic orbital electron populations 1.70926 1.08178 1.29858 1.48084 1.27703 0.96523 1.07339 0.92230 0.82878 0.74095 0.70335 0.78402 1.20873 1.18843 1.18899 1.22304 0.95171 0.91797 1.56075 0.91512 1.18983 0.94243 0.94556 0.95529 1.30326 1.12532 1.16574 1.11873 1.04375 0.74599 0.75942 0.72787 1.93486 1.72749 1.85610 1.46410 1.93497 1.72114 1.85568 1.46536 1.57498 1.57045 1.54077 1.14274 1.22921 0.95424 0.97068 0.85960 1.22429 0.97065 0.98593 0.96305 1.23136 0.94400 1.00676 0.95297 0.88896 1.22073 1.01610 0.98306 0.92208 1.22800 0.94796 0.98918 0.98289 1.21648 1.00537 1.01051 0.93432 1.20614 0.95153 0.96306 0.88039 0.92878 0.93699 0.97918 0.97956 0.84628 0.84307 0.90026 0.90750 0.87624 0.89215 0.89230 0.90156 0.90230 0.90138 0.92394 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.29 13.65 21.45 0.29 -59.00 16 2 C -0.04 -2.36 5.46 84.65 0.46 -1.90 16 3 Si 1.12 49.56 29.90 68.60 2.05 51.62 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.61 -35.22 9.11 25.60 0.23 -34.98 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.01 0.31 4.29 29.85 0.13 0.44 16 10 C -0.58 -23.56 6.12 71.98 0.44 -23.12 16 11 S 2.62 101.80 5.69 -56.49 -0.32 101.48 16 12 O -0.99 -43.88 17.70 -127.65 -2.26 -46.14 16 13 O -0.99 -43.68 17.27 -127.65 -2.20 -45.88 16 14 N -0.99 -28.26 3.52 -488.85 -1.72 -29.98 16 15 C 0.11 2.32 7.13 86.90 0.62 2.94 16 16 C -0.11 -1.44 6.49 31.61 0.21 -1.24 16 17 C -0.11 -1.85 3.56 -9.42 -0.03 -1.89 16 18 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 19 C -0.10 -1.27 6.40 31.50 0.20 -1.06 16 20 C -0.11 -1.68 6.94 32.64 0.23 -1.45 16 21 C -0.13 -3.04 6.29 30.38 0.19 -2.85 16 22 C 0.11 2.57 2.74 46.22 0.13 2.70 16 23 H 0.05 1.24 7.51 -2.39 -0.02 1.22 16 24 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 25 H 0.00 0.15 8.01 -2.39 -0.02 0.13 16 26 H 0.00 0.13 8.00 -2.39 -0.02 0.11 16 27 H 0.14 4.98 8.14 -2.39 -0.02 4.96 16 28 H 0.14 5.00 8.14 -2.39 -0.02 4.98 16 29 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.85 8.13 -2.39 -0.02 0.83 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -77.60 317.90 -0.24 -77.84 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.12 Total: 12.48 kcal Atomic # 6 Polarization: -65.21 SS G_CDS: 2.80 Total: -62.41 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -1.43 Total: -88.98 kcal Atomic # 8 Polarization: -87.56 SS G_CDS: -4.46 Total: -92.02 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.62 kcal Atomic # 16 Polarization: 101.80 SS G_CDS: -0.32 Total: 101.48 kcal Total: -77.60 -0.24 -77.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334662451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.404 kcal (2) G-P(sol) polarization free energy of solvation -77.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds