Wall clock time and date at job start Mon Mar 30 2020 01:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00529 * 2 1 4 4 H 1.48504 * 109.47191 * 240.00175 * 3 2 1 5 5 H 1.48503 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47450 * 119.99746 * 3 2 1 7 7 C 1.37883 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99669 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46874 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54104 * 68.37388 * 11 10 9 13 13 O 1.42100 * 110.54169 * 291.62661 * 11 10 9 14 14 N 1.65594 * 104.45172 * 180.02562 * 11 10 9 15 15 C 1.49323 * 127.11884 * 90.02204 * 14 11 10 16 16 C 1.56081 * 106.55870 * 172.75554 * 15 14 11 17 17 C 1.52822 * 101.26532 * 336.20800 * 16 15 14 18 18 H 1.08999 * 112.46135 * 281.80063 * 17 16 15 19 19 C 1.52560 * 119.41099 * 146.79385 * 17 16 15 20 20 C 1.56033 * 102.46859 * 211.59017 * 19 17 16 21 21 C 1.55878 * 105.95285 * 25.42523 * 20 19 17 22 22 C 1.41770 * 127.11083 * 269.98225 * 14 11 10 23 23 H 1.09002 * 105.74266 * 106.72290 * 22 14 11 24 24 H 0.97003 * 119.99304 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47129 * 60.00191 * 9 7 2 26 26 H 1.08996 * 109.47264 * 299.99942 * 9 7 2 27 27 H 1.09002 * 109.46785 * 60.00349 * 10 9 7 28 28 H 1.08996 * 109.47428 * 300.00210 * 10 9 7 29 29 H 1.09008 * 110.03704 * 53.48412 * 15 14 11 30 30 H 1.08995 * 110.04059 * 292.03270 * 15 14 11 31 31 H 1.08992 * 111.06305 * 218.20997 * 16 15 14 32 32 H 1.09001 * 111.06465 * 94.20424 * 16 15 14 33 33 H 1.09001 * 110.80675 * 93.34934 * 19 17 16 34 34 H 1.08998 * 110.98206 * 329.91188 * 19 17 16 35 35 H 1.09002 * 110.16799 * 144.56911 * 20 19 17 36 36 H 1.09002 * 110.16752 * 266.28798 * 20 19 17 37 37 H 1.09006 * 110.48679 * 123.87535 * 21 20 19 38 38 H 1.09000 * 110.48884 * 246.51242 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 16 1.3380 -5.2331 -0.0002 12 8 0.6644 -5.4193 -1.2375 13 8 0.6635 -5.4200 1.2365 14 7 2.5200 -6.3928 0.0006 15 6 3.1621 -7.0243 1.1917 16 6 4.0668 -8.1756 0.6512 17 6 3.3976 -8.4771 -0.6892 18 1 2.4937 -9.0760 -0.5779 19 6 4.2532 -8.9276 -1.8692 20 6 3.4769 -8.3440 -3.0904 21 6 2.6804 -7.1195 -2.5463 22 6 3.1312 -6.9920 -1.1296 23 1 4.1341 -6.5684 -1.1829 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8902 27 1 2.8716 -3.6044 0.8906 28 1 2.8717 -3.6045 -0.8894 29 1 2.3990 -7.4296 1.8563 30 1 3.7685 -6.2903 1.7221 31 1 4.0324 -9.0430 1.3102 32 1 5.0922 -7.8342 0.5091 33 1 4.2973 -10.0154 -1.9224 34 1 5.2555 -8.5036 -1.8089 35 1 4.1767 -8.0241 -3.8625 36 1 2.7911 -9.0903 -3.4913 37 1 2.9314 -6.2205 -3.1093 38 1 1.6084 -7.3115 -2.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334662453.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:35 Heat of formation + Delta-G solvation = -95.513328 kcal Electronic energy + Delta-G solvation = -19844.335306 eV Core-core repulsion = 16812.642104 eV Total energy + Delta-G solvation = -3031.693202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16046 -38.22409 -37.05731 -35.94183 -35.77893 -33.16994 -32.31537 -28.29981 -27.81995 -27.60021 -23.78946 -22.84591 -21.92515 -21.17304 -19.73971 -18.81796 -17.91543 -17.77270 -17.10431 -16.60951 -16.54940 -15.70078 -15.43553 -15.20849 -14.87513 -14.48573 -14.11239 -13.77924 -13.70293 -13.26271 -13.22812 -13.14720 -12.93415 -12.88113 -12.83833 -12.66039 -12.28449 -12.18820 -12.04807 -11.79525 -11.60379 -11.46265 -11.36682 -11.20528 -11.10538 -10.66800 -9.75557 -8.28551 -6.43575 -0.78722 1.39161 1.43107 1.51439 1.68437 2.36338 2.79896 3.04026 3.04653 3.08985 3.74121 3.82051 3.96893 4.03009 4.07612 4.24708 4.30449 4.45014 4.57117 4.61050 4.66906 4.68921 4.81383 4.82069 5.05253 5.08402 5.16894 5.19416 5.20950 5.24085 5.28666 5.34147 5.44553 5.58249 5.64485 5.74603 6.02424 6.69353 7.26820 8.83696 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029226 B = 0.004670 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.827853 B = 5994.847457 C = 6146.695073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.585 4.585 11 S 2.624 3.376 12 O -0.987 6.987 13 O -0.995 6.995 14 N -0.994 5.994 15 C 0.108 3.892 16 C -0.105 4.105 17 C -0.113 4.113 18 H 0.080 0.920 19 C -0.103 4.103 20 C -0.112 4.112 21 C -0.127 4.127 22 C 0.104 3.896 23 H 0.062 0.938 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.336 -18.740 -1.939 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.717 4.717 11 S 2.723 3.277 12 O -0.977 6.977 13 O -0.986 6.986 14 N -0.832 5.832 15 C -0.015 4.015 16 C -0.143 4.143 17 C -0.134 4.134 18 H 0.099 0.901 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.165 4.165 22 C -0.004 4.004 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.178 -18.736 -1.917 22.428 hybrid contribution 0.005 1.614 0.016 1.614 sum 12.183 -17.122 -1.901 21.100 Atomic orbital electron populations 1.70103 1.08146 1.28500 1.50621 1.26146 0.95876 1.03963 0.94167 0.85329 0.78135 0.77069 0.79510 1.18735 1.20786 1.18662 1.21469 0.93941 0.90738 1.51982 0.90676 1.18813 0.93546 0.93089 0.96257 1.30372 1.12774 1.16648 1.11914 1.04369 0.74403 0.76120 0.72759 1.93491 1.72290 1.85607 1.46310 1.93475 1.72554 1.85732 1.46808 1.57449 1.58212 1.53390 1.14142 1.22909 0.96361 0.96271 0.85965 1.22424 0.98701 0.97216 0.95987 1.23021 1.00148 0.94624 0.95602 0.90120 1.22069 0.98312 1.01602 0.92077 1.22817 0.98631 0.95191 0.98354 1.21646 1.01043 1.00388 0.93441 1.20597 0.96160 0.95482 0.88147 0.92018 0.92293 0.97616 0.97602 0.84214 0.84499 0.91101 0.89586 0.88128 0.88510 0.89493 0.89660 0.89936 0.90784 0.91500 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.98 43.66 29.54 68.60 2.03 45.68 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.58 -23.56 6.12 71.98 0.44 -23.12 16 11 S 2.62 102.12 5.69 -56.49 -0.32 101.80 16 12 O -0.99 -43.67 16.31 -127.65 -2.08 -45.75 16 13 O -1.00 -44.44 17.70 -127.65 -2.26 -46.70 16 14 N -0.99 -28.39 3.52 -489.40 -1.72 -30.11 16 15 C 0.11 2.30 7.13 86.90 0.62 2.92 16 16 C -0.10 -1.47 6.50 31.60 0.21 -1.26 16 17 C -0.11 -1.96 3.55 -9.53 -0.03 -2.00 16 18 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 19 C -0.10 -1.29 6.40 31.50 0.20 -1.09 16 20 C -0.11 -1.77 6.94 32.64 0.23 -1.55 16 21 C -0.13 -3.11 5.83 30.38 0.18 -2.93 16 22 C 0.10 2.51 2.93 46.12 0.14 2.64 16 23 H 0.06 1.28 7.49 -2.39 -0.02 1.27 16 24 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.14 4.95 8.14 -2.39 -0.02 4.93 16 28 H 0.14 4.93 8.14 -2.39 -0.02 4.91 16 29 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.03 8.13 -2.39 -0.02 1.01 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.87 8.13 -2.39 -0.02 0.85 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 Total: -1.00 -76.05 317.37 -0.24 -76.29 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.02 Total: 11.50 kcal Atomic # 6 Polarization: -58.11 SS G_CDS: 2.82 Total: -55.29 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.44 Total: -87.53 kcal Atomic # 8 Polarization: -88.11 SS G_CDS: -4.34 Total: -92.45 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 102.12 SS G_CDS: -0.32 Total: 101.80 kcal Total: -76.05 -0.24 -76.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334662453.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.222 kcal (2) G-P(sol) polarization free energy of solvation -76.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds