Wall clock time and date at job start Mon Mar 30 2020 01:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47275 * 240.00213 * 3 2 1 5 5 H 1.48497 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47194 * 119.99792 * 3 2 1 7 7 C 1.39903 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00264 * 175.54957 * 7 2 1 9 9 C 1.41150 * 120.00071 * 355.55049 * 7 2 1 10 10 C 1.40869 * 120.16744 * 214.79159 * 9 7 2 11 11 C 1.36372 * 119.83355 * 179.97438 * 10 9 7 12 12 C 1.39487 * 120.16693 * 359.97438 * 11 10 9 13 13 N 1.39228 * 119.83375 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00248 * 35.26331 * 13 12 11 15 15 O 1.21281 * 120.00174 * 355.98065 * 14 13 12 16 16 C 1.50702 * 120.00203 * 175.97846 * 14 13 12 17 17 H 1.08996 * 110.51359 * 300.70679 * 16 14 13 18 18 C 1.54991 * 110.56904 * 177.94594 * 16 14 13 19 19 C 1.54892 * 102.33001 * 204.34876 * 18 16 14 20 20 C 1.51841 * 104.43221 * 37.63195 * 19 18 16 21 21 O 1.20768 * 126.34143 * 156.22753 * 20 19 18 22 22 C 1.51681 * 107.34514 * 336.07679 * 20 19 18 23 23 C 1.39481 * 120.33104 * 0.28037 * 12 11 10 24 24 C 1.36376 * 120.16719 * 359.43875 * 23 12 11 25 25 H 0.97004 * 119.99788 * 359.97438 * 1 2 3 26 26 H 1.08010 * 120.08359 * 359.94983 * 10 9 7 27 27 H 1.08000 * 119.91656 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99707 * 215.54546 * 13 12 11 29 29 H 1.08994 * 110.83338 * 322.56162 * 18 16 14 30 30 H 1.09002 * 110.82650 * 85.94359 * 18 16 14 31 31 H 1.09004 * 110.43711 * 156.36216 * 19 18 16 32 32 H 1.08997 * 110.44734 * 278.76622 * 19 18 16 33 33 H 1.09004 * 110.13684 * 241.19875 * 22 20 19 34 34 H 1.08998 * 109.95917 * 119.82080 * 22 20 19 35 35 H 1.08001 * 119.91392 * 179.70728 * 23 12 11 36 36 H 1.08003 * 120.08466 * 180.27407 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0731 9 6 1.3057 -2.4322 0.0937 10 6 1.8649 -3.5185 0.7949 11 6 1.1800 -4.6945 0.8821 12 6 -0.0715 -4.8232 0.2798 13 7 -0.7650 -6.0268 0.3737 14 6 -0.6820 -6.7665 1.4972 15 8 0.0533 -6.4211 2.3977 16 6 -1.5029 -8.0228 1.6347 17 1 -2.5656 -7.7959 1.5502 18 6 -1.2015 -8.7254 2.9829 19 6 -1.5842 -10.1959 2.6823 20 6 -1.1325 -10.4194 1.2500 21 8 -0.8638 -11.4814 0.7417 22 6 -1.0847 -9.0623 0.5740 23 6 -0.6294 -3.7537 -0.4206 24 6 0.0411 -2.5697 -0.5116 25 1 -0.4850 0.8401 0.0004 26 1 2.8339 -3.4204 1.2618 27 1 1.6077 -5.5284 1.4190 28 1 -1.3046 -6.3350 -0.3711 29 1 -0.1442 -8.6437 3.2348 30 1 -1.8212 -8.3156 3.7805 31 1 -1.0584 -10.8716 3.3570 32 1 -2.6618 -10.3344 2.7697 33 1 -1.7786 -9.0370 -0.2662 34 1 -0.0722 -8.8546 0.2278 35 1 -1.5968 -3.8623 -0.8884 36 1 -0.3941 -1.7411 -1.0505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335516936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:03 Heat of formation + Delta-G solvation = -62.006305 kcal Electronic energy + Delta-G solvation = -19898.713361 eV Core-core repulsion = 16733.029181 eV Total energy + Delta-G solvation = -3165.684180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44707 -39.27007 -37.44739 -35.85942 -34.48360 -32.95663 -29.96338 -29.53344 -28.67750 -27.36996 -24.97866 -22.54623 -21.34241 -20.55857 -19.83955 -19.31131 -17.47430 -17.25805 -16.62243 -16.12150 -15.59710 -15.19631 -14.94019 -14.53279 -13.94251 -13.88160 -13.57641 -13.24869 -12.80604 -12.67237 -12.17312 -12.00462 -11.83675 -11.66254 -11.54568 -11.34169 -11.14619 -11.10510 -10.99516 -10.74939 -10.07704 -9.81836 -9.51885 -9.44599 -9.13198 -8.90586 -7.57933 -6.89943 -6.64232 -4.37042 1.66135 2.49366 2.98740 3.06252 3.08019 3.10588 3.28318 3.57594 3.91022 3.96269 4.11900 4.49758 4.67831 4.75791 4.93050 4.97600 5.13911 5.23469 5.38218 5.53148 5.60314 5.65010 5.85962 6.03328 6.16005 6.40925 6.71872 6.88254 7.04053 7.17585 7.20360 7.26770 7.60730 7.70999 7.83084 8.03284 8.22135 8.28687 8.58965 8.69632 8.90177 8.97026 10.26706 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.052591 B = 0.003318 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.283849 B = 8436.737348 C = 8515.186496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.000 4.000 13 N -0.649 5.649 14 C 0.504 3.496 15 O -0.527 6.527 16 C -0.110 4.110 17 H 0.108 0.892 18 C -0.100 4.100 19 C -0.184 4.184 20 C 0.374 3.626 21 O -0.448 6.448 22 C -0.178 4.178 23 C -0.120 4.120 24 C -0.142 4.142 25 H 0.278 0.722 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.395 0.605 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -12.385 1.249 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.092 4.092 13 N -0.292 5.292 14 C 0.290 3.710 15 O -0.403 6.403 16 C -0.132 4.132 17 H 0.126 0.874 18 C -0.137 4.137 19 C -0.221 4.221 20 C 0.249 3.751 21 O -0.321 6.321 22 C -0.216 4.216 23 C -0.140 4.140 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.229 0.771 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.617 -12.529 1.635 13.827 hybrid contribution -0.109 0.831 -0.277 0.883 sum -5.726 -11.698 1.358 13.095 Atomic orbital electron populations 1.69752 1.07288 1.28836 1.38003 1.25879 0.94951 1.01174 0.92524 0.86241 0.79800 0.80071 0.79791 1.19039 1.20423 1.19083 1.19480 0.94742 0.90249 1.44748 0.90625 1.17720 0.92278 0.91985 0.88189 1.20813 1.01241 0.95001 1.05566 1.20385 0.92765 0.97841 0.99499 1.17273 0.94241 0.85936 1.11758 1.43014 1.48740 1.21276 1.16142 1.20293 0.83367 0.84973 0.82329 1.90696 1.38916 1.70730 1.39976 1.22106 1.01226 0.92936 0.96943 0.87412 1.22330 1.04017 0.91650 0.95743 1.22957 1.03627 0.99135 0.96408 1.24976 0.70631 0.89092 0.90417 1.90433 1.38228 1.31433 1.72014 1.22696 1.05165 0.94154 0.99549 1.20316 0.98346 0.93161 1.02196 1.21197 0.97280 0.95579 1.02119 0.91069 0.88603 0.87532 0.77111 0.89242 0.89683 0.88696 0.87620 0.87535 0.87681 0.89089 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.89 10.59 55.55 0.59 -20.30 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 18.84 29.56 -169.99 -5.03 13.82 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.21 9.02 -37.85 -0.34 -12.55 16 8 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 11 C -0.09 -1.99 8.61 -39.79 -0.34 -2.33 16 12 C 0.00 0.00 6.30 -83.57 -0.53 -0.52 16 13 N -0.65 -10.49 5.27 -9.74 -0.05 -10.55 16 14 C 0.50 7.85 6.83 -10.99 -0.08 7.78 16 15 O -0.53 -10.50 13.16 5.56 0.07 -10.43 16 16 C -0.11 -1.11 3.28 -90.05 -0.30 -1.40 16 17 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.10 -0.94 5.99 -24.68 -0.15 -1.09 16 19 C -0.18 -1.40 6.72 -26.32 -0.18 -1.58 16 20 C 0.37 3.74 7.89 -27.99 -0.22 3.52 16 21 O -0.45 -6.03 17.99 5.99 0.11 -5.93 16 22 C -0.18 -1.59 6.25 -26.73 -0.17 -1.76 16 23 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 24 C -0.14 -3.58 8.61 -39.26 -0.34 -3.92 16 25 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 26 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 27 H 0.11 2.45 6.23 -52.49 -0.33 2.12 16 28 H 0.40 4.87 8.81 -40.82 -0.36 4.51 16 29 H 0.09 1.02 7.47 -51.93 -0.39 0.63 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.07 7.82 -51.93 -0.41 0.66 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 3.44 6.13 -52.48 -0.32 3.12 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -31.18 307.45 -8.08 -39.26 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.31 Total: 8.21 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -4.10 Total: -18.72 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.54 Total: -30.85 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.18 Total: -16.35 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.18 -8.08 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335516936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.749 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds