Wall clock time and date at job start Mon Mar 30 2020 01:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86802 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47275 * 240.00213 * 3 2 1 5 5 H 1.48497 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47194 * 119.99792 * 3 2 1 7 7 C 1.39903 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00264 * 175.54957 * 7 2 1 9 9 C 1.41150 * 120.00071 * 355.55049 * 7 2 1 10 10 C 1.40869 * 120.16744 * 214.79159 * 9 7 2 11 11 C 1.36372 * 119.83355 * 179.97438 * 10 9 7 12 12 C 1.39487 * 120.16693 * 359.97438 * 11 10 9 13 13 N 1.39228 * 119.83375 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00248 * 35.26331 * 13 12 11 15 15 O 1.21281 * 120.00174 * 355.98065 * 14 13 12 16 16 C 1.50702 * 120.00203 * 175.97846 * 14 13 12 17 17 H 1.08996 * 110.51359 * 300.70679 * 16 14 13 18 18 C 1.54991 * 110.56904 * 177.94594 * 16 14 13 19 19 C 1.54892 * 102.33001 * 204.34876 * 18 16 14 20 20 C 1.51841 * 104.43221 * 37.63195 * 19 18 16 21 21 O 1.20768 * 126.34143 * 156.22753 * 20 19 18 22 22 C 1.51681 * 107.34514 * 336.07679 * 20 19 18 23 23 C 1.39481 * 120.33104 * 0.28037 * 12 11 10 24 24 C 1.36376 * 120.16719 * 359.43875 * 23 12 11 25 25 H 0.97004 * 119.99788 * 359.97438 * 1 2 3 26 26 H 1.08010 * 120.08359 * 359.94983 * 10 9 7 27 27 H 1.08000 * 119.91656 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99707 * 215.54546 * 13 12 11 29 29 H 1.08994 * 110.83338 * 322.56162 * 18 16 14 30 30 H 1.09002 * 110.82650 * 85.94359 * 18 16 14 31 31 H 1.09004 * 110.43711 * 156.36216 * 19 18 16 32 32 H 1.08997 * 110.44734 * 278.76622 * 19 18 16 33 33 H 1.09004 * 110.13684 * 241.19875 * 22 20 19 34 34 H 1.08998 * 109.95917 * 119.82080 * 22 20 19 35 35 H 1.08001 * 119.91392 * 179.70728 * 23 12 11 36 36 H 1.08003 * 120.08466 * 180.27407 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0731 9 6 1.3057 -2.4322 0.0937 10 6 1.8649 -3.5185 0.7949 11 6 1.1800 -4.6945 0.8821 12 6 -0.0715 -4.8232 0.2798 13 7 -0.7650 -6.0268 0.3737 14 6 -0.6820 -6.7665 1.4972 15 8 0.0533 -6.4211 2.3977 16 6 -1.5029 -8.0228 1.6347 17 1 -2.5656 -7.7959 1.5502 18 6 -1.2015 -8.7254 2.9829 19 6 -1.5842 -10.1959 2.6823 20 6 -1.1325 -10.4194 1.2500 21 8 -0.8638 -11.4814 0.7417 22 6 -1.0847 -9.0623 0.5740 23 6 -0.6294 -3.7537 -0.4206 24 6 0.0411 -2.5697 -0.5116 25 1 -0.4850 0.8401 0.0004 26 1 2.8339 -3.4204 1.2618 27 1 1.6077 -5.5284 1.4190 28 1 -1.3046 -6.3350 -0.3711 29 1 -0.1442 -8.6437 3.2348 30 1 -1.8212 -8.3156 3.7805 31 1 -1.0584 -10.8716 3.3570 32 1 -2.6618 -10.3344 2.7697 33 1 -1.7786 -9.0370 -0.2662 34 1 -0.0722 -8.8546 0.2278 35 1 -1.5968 -3.8623 -0.8884 36 1 -0.3941 -1.7411 -1.0505 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335516936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:02 Heat of formation + Delta-G solvation = -81.067582 kcal Electronic energy + Delta-G solvation = -19899.539920 eV Core-core repulsion = 16733.029181 eV Total energy + Delta-G solvation = -3166.510739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58625 -40.40051 -39.09797 -36.86697 -36.11509 -34.68972 -31.51905 -31.12619 -29.97334 -28.30926 -26.67827 -23.87589 -23.01863 -22.13053 -20.83797 -20.36287 -19.25781 -18.56819 -17.87946 -17.24862 -16.96325 -16.61735 -16.00628 -15.74734 -15.53206 -15.08552 -14.86020 -14.47850 -14.31326 -14.02712 -13.82369 -13.56519 -13.25535 -12.86149 -12.84154 -12.71303 -12.50051 -12.42741 -12.25702 -11.84982 -11.73353 -11.38529 -11.20187 -10.82989 -10.60516 -10.43964 -9.45995 -8.72010 -8.50168 -6.33043 0.80248 0.89787 1.14249 1.39690 1.46474 1.51291 1.80171 2.23920 2.34486 2.80884 3.12445 3.34415 3.66905 3.74088 3.88139 4.21269 4.28892 4.37333 4.39611 4.43191 4.55010 4.74803 4.84748 4.94592 5.00822 5.14083 5.15493 5.16974 5.28813 5.35725 5.45272 5.70091 5.91924 6.03387 6.14573 6.40047 6.44737 6.67816 6.75574 6.97042 7.00722 7.42172 8.42154 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.052591 B = 0.003318 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.283849 B = 8436.737348 C = 8515.186496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.029 3.971 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.067 3.933 10 C -0.223 4.223 11 C -0.098 4.098 12 C 0.021 3.979 13 N -0.643 5.643 14 C 0.503 3.497 15 O -0.572 6.572 16 C -0.095 4.095 17 H 0.147 0.853 18 C -0.101 4.101 19 C -0.170 4.170 20 C 0.376 3.624 21 O -0.488 6.488 22 C -0.174 4.174 23 C -0.118 4.118 24 C -0.160 4.160 25 H 0.285 0.715 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.419 0.581 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -13.374 1.192 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.532 4.532 8 H 0.089 0.911 9 C 0.065 3.935 10 C -0.243 4.243 11 C -0.118 4.118 12 C -0.073 4.073 13 N -0.288 5.288 14 C 0.292 3.708 15 O -0.451 6.451 16 C -0.117 4.117 17 H 0.165 0.835 18 C -0.139 4.139 19 C -0.208 4.208 20 C 0.254 3.746 21 O -0.364 6.364 22 C -0.211 4.211 23 C -0.138 4.138 24 C -0.180 4.180 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.256 0.744 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.110 0.890 35 H 0.145 0.855 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.662 -13.553 1.562 15.647 hybrid contribution 0.467 0.968 -0.215 1.096 sum -7.194 -12.585 1.347 14.559 Atomic orbital electron populations 1.69814 1.08499 1.30005 1.38510 1.26708 0.95824 1.04202 0.91580 0.85174 0.78534 0.75688 0.79788 1.18299 1.19163 1.19080 1.19709 0.94824 0.91466 1.47172 0.91069 1.18019 0.93429 0.92614 0.89428 1.20934 1.01591 0.95690 1.06068 1.20513 0.93835 0.97334 1.00127 1.17332 0.93368 0.87624 1.08962 1.42976 1.48510 1.19648 1.17643 1.21315 0.82646 0.85855 0.81012 1.90690 1.40863 1.72076 1.41507 1.22120 1.02014 0.89890 0.97626 0.83506 1.22329 1.02775 0.92926 0.95851 1.22930 1.05513 0.97643 0.94674 1.25284 0.69225 0.88670 0.91402 1.90435 1.40186 1.32741 1.73006 1.22693 1.05236 0.93114 1.00090 1.20584 0.99378 0.92087 1.01778 1.21186 0.97422 0.96591 1.02773 0.90456 0.88858 0.87446 0.74386 0.91861 0.88500 0.88173 0.84487 0.84501 0.89044 0.85521 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.10 10.59 21.82 0.23 -43.87 16 2 C 0.03 1.48 5.42 85.24 0.46 1.94 16 3 Si 0.99 39.08 29.56 68.60 2.03 41.11 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.50 -27.60 9.02 23.39 0.21 -27.39 16 8 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 9 C 0.07 3.71 5.55 -21.28 -0.12 3.59 16 10 C -0.22 -11.58 9.74 22.48 0.22 -11.36 16 11 C -0.10 -4.65 8.61 22.14 0.19 -4.46 16 12 C 0.02 0.87 6.30 38.57 0.24 1.11 16 13 N -0.64 -19.10 5.27 -303.12 -1.60 -20.70 16 14 C 0.50 14.54 6.83 87.66 0.60 15.14 16 15 O -0.57 -22.44 13.16 -3.03 -0.04 -22.48 16 16 C -0.10 -1.55 3.28 -10.42 -0.03 -1.59 16 17 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 18 C -0.10 -1.62 5.99 31.92 0.19 -1.43 16 19 C -0.17 -2.01 6.72 30.86 0.21 -1.80 16 20 C 0.38 6.51 7.89 29.78 0.23 6.75 16 21 O -0.49 -12.35 17.99 -1.47 -0.03 -12.37 16 22 C -0.17 -2.53 6.25 30.60 0.19 -2.33 16 23 C -0.12 -5.12 9.90 22.13 0.22 -4.90 16 24 C -0.16 -8.22 8.61 22.48 0.19 -8.02 16 25 H 0.28 13.59 8.30 -92.71 -0.77 12.82 16 26 H 0.09 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.11 5.03 6.23 -2.91 -0.02 5.01 16 28 H 0.42 8.66 8.81 -92.71 -0.82 7.85 16 29 H 0.06 1.38 7.47 -2.39 -0.02 1.36 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.66 7.82 -2.39 -0.02 1.64 16 35 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 36 H 0.12 6.35 6.13 -2.91 -0.02 6.33 16 Total: -1.00 -71.29 307.45 3.90 -67.39 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.30 Total: 25.69 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 3.01 Total: -34.77 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -1.37 Total: -64.57 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.07 Total: -34.86 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -71.29 3.90 -67.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335516936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.676 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds