Wall clock time and date at job start Mon Mar 30 2020 01:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48496 * 109.47058 * 265.00776 * 3 2 1 5 5 H 1.48498 * 109.46933 * 25.00524 * 3 2 1 6 6 H 1.48496 * 109.46945 * 145.00596 * 3 2 1 7 7 C 1.39937 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99835 * 164.57881 * 7 2 1 9 9 C 1.41405 * 119.99998 * 344.57988 * 7 2 1 10 10 C 1.40779 * 120.21292 * 330.55876 * 9 7 2 11 11 C 1.37636 * 119.88881 * 179.76893 * 10 9 7 12 12 C 1.38526 * 120.32176 * 0.50771 * 11 10 9 13 13 C 1.39252 * 120.42743 * 359.74779 * 12 11 10 14 14 N 1.39941 * 119.95076 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00683 * 144.86065 * 14 13 12 16 16 O 1.21287 * 119.99689 * 4.78133 * 15 14 13 17 17 C 1.50692 * 120.00467 * 184.77519 * 15 14 13 18 18 H 1.09001 * 110.51403 * 302.75751 * 17 15 14 19 19 C 1.54987 * 110.57254 * 180.02562 * 17 15 14 20 20 C 1.54892 * 102.33261 * 204.34975 * 19 17 15 21 21 C 1.51835 * 104.43549 * 37.62845 * 20 19 17 22 22 O 1.20757 * 126.34484 * 156.18686 * 21 20 19 23 23 C 1.51456 * 107.31624 * 336.20551 * 21 20 19 24 24 C 1.38283 * 120.10515 * 359.97438 * 13 12 11 25 25 H 0.97004 * 120.00154 * 359.97438 * 1 2 3 26 26 H 1.08010 * 120.05525 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.84207 * 180.27993 * 11 10 9 28 28 H 1.07997 * 119.79025 * 179.71803 * 12 11 10 29 29 H 0.97005 * 119.99290 * 324.86137 * 14 13 12 30 30 H 1.08993 * 110.83286 * 322.56538 * 19 17 15 31 31 H 1.09001 * 110.82972 * 86.14259 * 19 17 15 32 32 H 1.09007 * 110.43679 * 156.36471 * 20 19 17 33 33 H 1.09000 * 110.43952 * 278.75974 * 20 19 17 34 34 H 1.08997 * 109.98286 * 241.00994 * 23 21 20 35 35 H 1.09001 * 109.98520 * 119.70793 * 23 21 20 36 36 H 1.08001 * 120.15904 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.5954 1.9854 -1.3947 5 1 1.3911 2.6808 0.5918 6 1 3.4831 1.4728 0.8029 7 6 2.0079 -1.2119 -0.0005 8 1 3.0587 -1.2287 -0.2492 9 6 1.3390 -2.4146 0.3245 10 6 0.2406 -2.3986 1.2050 11 6 -0.4086 -3.5725 1.5131 12 6 0.0200 -4.7723 0.9691 13 6 1.1083 -4.8042 0.1010 14 7 1.5325 -6.0217 -0.4432 15 6 2.0173 -6.0658 -1.6999 16 8 2.1673 -5.0393 -2.3283 17 6 2.3733 -7.3903 -2.3242 18 1 3.1084 -7.9150 -1.7140 19 6 2.9074 -7.1873 -3.7649 20 6 2.6102 -8.5571 -4.4240 21 6 1.2713 -8.9745 -3.8423 22 8 0.4811 -9.7389 -4.3418 23 6 1.1101 -8.2542 -2.5198 24 6 1.7700 -3.6345 -0.2252 25 1 -0.4850 0.8401 0.0004 26 1 -0.0942 -1.4663 1.6354 27 1 -1.2540 -3.5588 2.1851 28 1 -0.4929 -5.6889 1.2203 29 1 1.4775 -6.8340 0.0842 30 1 2.3653 -6.3881 -4.2703 31 1 3.9785 -6.9854 -3.7563 32 1 2.5386 -8.4511 -5.5066 33 1 3.3829 -9.2805 -4.1635 34 1 1.0246 -8.9781 -1.7094 35 1 0.2248 -7.6189 -2.5471 36 1 2.6139 -3.6582 -0.8987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335552757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:04 Heat of formation + Delta-G solvation = -83.887903 kcal Electronic energy + Delta-G solvation = -20081.318045 eV Core-core repulsion = 16914.685008 eV Total energy + Delta-G solvation = -3166.633037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61847 -40.40874 -39.02095 -36.86834 -36.15131 -34.81148 -31.73850 -30.95363 -29.47934 -28.10561 -27.22759 -24.10044 -22.81533 -22.18101 -20.87465 -20.42649 -19.48779 -18.32204 -17.45607 -17.19649 -16.95031 -16.49800 -16.46023 -15.88612 -15.62404 -15.18796 -14.85729 -14.61172 -14.32398 -14.14100 -13.79161 -13.50169 -13.15974 -12.81184 -12.80097 -12.61336 -12.47764 -12.28014 -12.22046 -11.97906 -11.81742 -11.56615 -11.20400 -10.85154 -10.67495 -10.41529 -9.34912 -8.72172 -8.61810 -6.37045 0.86534 0.90020 1.01541 1.36252 1.46367 1.51611 1.76539 2.20053 2.26368 2.74690 3.11365 3.32462 3.69747 3.72949 3.86357 4.19321 4.26824 4.35134 4.39856 4.47954 4.64178 4.73482 4.83734 4.98365 5.05076 5.13402 5.14122 5.14301 5.25332 5.27536 5.33680 5.77383 5.87585 6.07166 6.11543 6.36501 6.43527 6.67047 6.69961 6.94654 7.01753 7.37150 8.36806 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.004086 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.432205 B = 6850.313853 C = 7478.463746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.262 1.262 6 H -0.258 1.258 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.089 3.911 10 C -0.194 4.194 11 C -0.094 4.094 12 C -0.246 4.246 13 C 0.153 3.847 14 N -0.655 5.655 15 C 0.504 3.496 16 O -0.565 6.565 17 C -0.093 4.093 18 H 0.154 0.846 19 C -0.104 4.104 20 C -0.170 4.170 21 C 0.376 3.624 22 O -0.487 6.487 23 C -0.172 4.172 24 C -0.234 4.234 25 H 0.287 0.713 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.423 0.577 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -15.280 -1.843 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.537 4.537 8 H 0.085 0.915 9 C 0.086 3.914 10 C -0.214 4.214 11 C -0.113 4.113 12 C -0.267 4.267 13 C 0.060 3.940 14 N -0.301 5.301 15 C 0.292 3.708 16 O -0.442 6.442 17 C -0.114 4.114 18 H 0.171 0.829 19 C -0.142 4.142 20 C -0.207 4.207 21 C 0.254 3.746 22 O -0.363 6.363 23 C -0.210 4.210 24 C -0.256 4.256 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.140 0.860 28 H 0.152 0.848 29 H 0.262 0.738 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.105 0.895 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.557 -14.853 -2.592 15.751 hybrid contribution 0.024 0.964 0.170 0.979 sum 4.580 -13.889 -2.422 14.824 Atomic orbital electron populations 1.69872 1.08884 1.30436 1.36649 1.26710 0.95562 1.04328 0.91230 0.85233 0.79113 0.75925 0.79499 1.19026 1.18626 1.18178 1.19735 0.97239 0.92508 1.44228 0.91502 1.17854 0.91958 0.92644 0.88946 1.21220 1.00879 0.97202 1.02055 1.20836 0.98768 0.92348 0.99359 1.20511 1.00268 0.98291 1.07674 1.17560 0.94631 0.85395 0.96413 1.43378 1.62566 1.09305 1.14811 1.21452 0.76140 0.92245 0.80914 1.90771 1.52819 1.37615 1.63021 1.22127 0.99377 0.90972 0.98968 0.82873 1.22356 1.03148 0.96209 0.92445 1.22934 0.96799 0.98380 1.02568 1.25216 0.87100 0.75582 0.86682 1.90430 1.48829 1.31409 1.65650 1.22627 0.98253 1.00440 0.99678 1.21130 1.04964 0.92943 1.06543 0.90235 0.88591 0.86048 0.84844 0.73838 0.92303 0.88251 0.88275 0.84160 0.84182 0.89461 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.77 11.15 21.83 0.24 -45.53 16 2 C 0.04 1.90 5.15 85.25 0.44 2.34 16 3 Si 0.98 40.34 29.59 68.60 2.03 42.37 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.51 -29.38 9.04 23.46 0.21 -29.16 16 8 H 0.07 3.81 7.89 -2.92 -0.02 3.79 16 9 C 0.09 5.07 5.52 -21.31 -0.12 4.95 16 10 C -0.19 -10.39 8.66 22.75 0.20 -10.19 16 11 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 12 C -0.25 -9.97 9.97 22.58 0.23 -9.74 16 13 C 0.15 6.58 6.29 38.10 0.24 6.82 16 14 N -0.65 -20.06 5.33 -303.66 -1.62 -21.67 16 15 C 0.50 15.61 6.83 87.66 0.60 16.21 16 16 O -0.56 -24.49 13.14 -3.05 -0.04 -24.53 16 17 C -0.09 -1.62 3.29 -10.43 -0.03 -1.65 16 18 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 19 C -0.10 -1.84 6.00 31.92 0.19 -1.64 16 20 C -0.17 -2.19 6.72 30.86 0.21 -1.99 16 21 C 0.38 6.96 7.88 29.71 0.23 7.19 16 22 O -0.49 -12.85 17.99 -1.44 -0.03 -12.88 16 23 C -0.17 -2.73 6.26 30.52 0.19 -2.54 16 24 C -0.23 -12.36 8.44 22.85 0.19 -12.17 16 25 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 26 H 0.10 5.37 6.45 -2.91 -0.02 5.36 16 27 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 28 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.42 8.59 8.82 -92.70 -0.82 7.77 16 30 H 0.06 1.45 7.44 -2.39 -0.02 1.43 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.80 7.82 -2.39 -0.02 1.78 16 36 H 0.09 5.19 6.21 -2.91 -0.02 5.17 16 Total: -1.00 -76.66 308.33 3.88 -72.78 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.29 Total: 25.07 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: 3.00 Total: -35.60 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -1.37 Total: -67.20 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.07 Total: -37.41 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -76.66 3.88 -72.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335552757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.112 kcal (2) G-P(sol) polarization free energy of solvation -76.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds