Wall clock time and date at job start Mon Mar 30 2020 00:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86805 * 119.99884 * 2 1 4 4 H 1.48501 * 109.46924 * 239.99613 * 3 2 1 5 5 H 1.48495 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47272 * 119.99731 * 3 2 1 7 7 C 1.40046 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00609 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00050 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99395 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00353 * 180.02562 * 9 7 2 12 12 C 1.47568 * 126.95636 * 0.02562 * 11 9 7 13 13 C 1.54225 * 107.05113 * 205.12823 * 12 11 9 14 14 C 1.53586 * 104.79661 * 358.11230 * 13 12 11 15 15 C 1.48300 * 126.95475 * 180.02562 * 11 9 7 16 16 O 1.42758 * 111.46672 * 99.01665 * 14 13 12 17 17 C 1.44206 * 104.70585 * 95.31546 * 16 14 13 18 18 C 1.51179 * 106.04474 * 27.13219 * 17 16 14 19 19 C 1.37909 * 132.63397 * 162.76168 * 18 17 16 20 20 C 1.38287 * 120.00265 * 179.83352 * 19 18 17 21 21 C 1.38257 * 119.99614 * 359.97438 * 20 19 18 22 22 C 1.38255 * 120.04654 * 0.12914 * 21 20 19 23 23 C 1.38006 * 120.05078 * 359.95882 * 22 21 20 24 24 H 0.97000 * 120.00120 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.91422 * 85.77547 * 12 11 9 26 26 H 1.08997 * 110.08306 * 324.57381 * 12 11 9 27 27 H 1.08994 * 110.37580 * 239.28173 * 13 12 11 28 28 H 1.09008 * 110.46456 * 116.98854 * 13 12 11 29 29 H 1.09001 * 110.67610 * 23.41910 * 15 11 9 30 30 H 1.08996 * 110.66824 * 260.26959 * 15 11 9 31 31 H 1.09002 * 110.13314 * 146.27655 * 17 16 14 32 32 H 1.08995 * 110.13541 * 267.91605 * 17 16 14 33 33 H 1.07999 * 120.00189 * 359.83413 * 19 18 17 34 34 H 1.07996 * 119.99847 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.98004 * 180.14792 * 21 20 19 36 36 H 1.07996 * 119.97654 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0016 12 6 3.4139 -3.8264 0.0033 13 6 3.7019 -5.2064 -0.6222 14 6 2.3166 -5.7973 -0.9234 15 6 1.3686 -5.0124 0.0012 16 8 1.9616 -5.6237 -2.2952 17 6 2.3453 -6.8594 -2.9318 18 6 2.2784 -7.9212 -1.8577 19 6 2.2301 -9.2985 -1.9075 20 6 2.1759 -10.0314 -0.7361 21 6 2.1705 -9.3832 0.4851 22 6 2.2167 -8.0024 0.5361 23 6 2.2690 -7.2690 -0.6318 24 1 -0.4850 0.8400 -0.0004 25 1 3.7904 -3.7962 1.0258 26 1 3.8871 -3.0438 -0.5897 27 1 4.2387 -5.8389 0.0848 28 1 4.2755 -5.0955 -1.5425 29 1 0.3573 -5.0003 -0.4053 30 1 1.3754 -5.4336 1.0065 31 1 1.6516 -7.0972 -3.7383 32 1 3.3604 -6.7815 -3.3212 33 1 2.2347 -9.8049 -2.8615 34 1 2.1377 -11.1100 -0.7752 35 1 2.1305 -9.9559 1.3999 36 1 2.2120 -7.4972 1.4906 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335741378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:23 Heat of formation + Delta-G solvation = -34.311999 kcal Electronic energy + Delta-G solvation = -20868.444105 eV Core-core repulsion = 17703.960841 eV Total energy + Delta-G solvation = -3164.483265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10290 -38.11930 -36.97530 -35.10708 -32.46190 -31.58922 -31.33243 -29.48122 -28.47283 -26.41421 -25.20953 -23.51674 -22.17984 -21.63022 -19.80642 -19.13585 -17.01191 -16.69495 -15.99238 -15.78892 -15.47157 -15.17532 -14.59905 -14.25214 -14.11613 -13.62518 -13.49304 -13.04173 -12.89939 -12.56242 -12.22263 -11.88945 -11.78088 -11.64473 -11.29021 -11.11104 -11.08954 -10.93021 -10.68779 -10.59226 -10.24319 -10.16680 -9.83084 -8.97790 -8.82263 -8.57828 -7.61365 -7.20740 -6.16722 -4.61308 1.14425 1.24581 3.18112 3.22461 3.24577 3.57816 3.98158 4.07768 4.17241 4.47843 4.58040 4.76988 4.85611 4.89503 5.06598 5.13411 5.29566 5.34056 5.45068 5.47705 5.55930 5.75759 5.79136 5.83094 5.99361 6.05048 6.13028 6.27062 6.34287 6.40323 6.42953 6.48189 6.62106 6.79982 7.04764 7.33840 7.46595 8.12015 8.42891 9.04563 9.53690 10.60869 10.79681 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038960 B = 0.004410 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.513320 B = 6347.793506 C = 6410.749181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.576 3.424 10 O -0.575 6.575 11 N -0.641 5.641 12 C 0.121 3.879 13 C -0.140 4.140 14 C 0.131 3.869 15 C 0.123 3.877 16 O -0.328 6.328 17 C 0.085 3.915 18 C -0.130 4.130 19 C -0.097 4.097 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.100 4.100 24 H 0.269 0.731 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.439 -17.314 -1.719 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.383 3.617 10 O -0.457 6.457 11 N -0.380 5.380 12 C -0.004 4.004 13 C -0.178 4.178 14 C 0.090 3.910 15 C -0.002 4.002 16 O -0.246 6.246 17 C 0.008 3.992 18 C -0.131 4.131 19 C -0.115 4.115 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.101 4.101 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.407 -16.858 -1.817 18.503 hybrid contribution 0.702 0.457 0.021 0.838 sum 8.108 -16.402 -1.797 18.384 Atomic orbital electron populations 1.70012 1.07070 1.27419 1.35183 1.25724 0.94635 1.00277 0.92636 0.86413 0.79809 0.80963 0.79455 1.19241 1.20529 1.19253 1.20825 0.93544 0.88877 1.54188 0.91285 1.18019 0.86622 0.80965 0.76052 1.90613 1.13858 1.85676 1.55517 1.49085 1.04528 1.04186 1.80238 1.21679 0.84684 0.94992 0.99046 1.22849 0.95591 0.97664 1.01745 1.21063 0.96323 0.89708 0.83903 1.21940 0.97725 0.84579 0.95915 1.89168 1.83130 1.33298 1.19035 1.21841 1.00937 0.82154 0.94262 1.21214 1.00925 0.94764 0.96149 1.20343 1.00679 0.91823 0.98695 1.21091 1.00693 0.99756 0.92259 1.21105 1.00346 0.93968 0.98035 1.20460 0.99469 0.93541 0.97306 1.20720 0.99892 0.95357 0.94154 0.92010 0.93359 0.91013 0.90542 0.90379 0.89942 0.91957 0.88741 0.90690 0.85941 0.85687 0.85544 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.53 11.83 55.55 0.66 -22.88 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.47 29.56 -169.99 -5.02 15.45 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -15.63 9.03 -35.63 -0.32 -15.95 16 8 H 0.07 1.83 6.72 -52.49 -0.35 1.48 16 9 C 0.58 17.27 7.82 -12.98 -0.10 17.17 16 10 O -0.57 -19.49 15.24 5.20 0.08 -19.41 16 11 N -0.64 -15.54 3.30 -171.69 -0.57 -16.11 16 12 C 0.12 2.32 6.61 -2.82 -0.02 2.30 16 13 C -0.14 -2.19 6.29 -25.79 -0.16 -2.35 16 14 C 0.13 2.26 0.99 -91.26 -0.09 2.17 16 15 C 0.12 2.56 6.26 -2.56 -0.02 2.54 16 16 O -0.33 -6.13 11.13 -35.23 -0.39 -6.52 16 17 C 0.08 1.15 7.63 36.24 0.28 1.42 16 18 C -0.13 -1.71 6.33 -104.28 -0.66 -2.37 16 19 C -0.10 -1.03 10.04 -39.68 -0.40 -1.43 16 20 C -0.12 -1.16 10.05 -39.56 -0.40 -1.55 16 21 C -0.12 -1.19 10.05 -39.57 -0.40 -1.58 16 22 C -0.09 -1.11 9.67 -39.66 -0.38 -1.49 16 23 C -0.10 -1.45 5.01 -104.76 -0.52 -1.97 16 24 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.41 7.17 -51.93 -0.37 1.03 16 27 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 28 H 0.08 1.15 8.08 -51.92 -0.42 0.73 16 29 H 0.08 1.93 7.87 -51.93 -0.41 1.53 16 30 H 0.06 1.16 7.41 -51.93 -0.39 0.78 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.13 1.42 7.72 -52.49 -0.40 1.02 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -36.45 303.37 -8.39 -44.84 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.42 Total: 0.78 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -3.29 Total: -0.72 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.09 Total: -38.99 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.31 Total: -25.93 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.45 -8.39 -44.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335741378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.523 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds