Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99800 * 2 1 4 4 H 1.48495 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46994 * 300.00046 * 3 2 1 6 6 H 1.48501 * 109.47361 * 60.00261 * 3 2 1 7 7 C 1.37869 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00074 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00053 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00046 * 5.08398 * 11 10 9 13 13 C 1.50699 * 120.00071 * 185.08450 * 11 10 9 14 14 H 1.09007 * 109.11241 * 336.61772 * 13 11 10 15 15 C 1.52617 * 109.12367 * 217.53043 * 13 11 10 16 16 C 1.53434 * 109.39246 * 184.91527 * 15 13 11 17 17 C 1.51483 * 107.37626 * 63.95254 * 16 15 13 18 18 O 1.21251 * 121.18025 * 137.42895 * 17 16 15 19 19 C 1.47593 * 117.63878 * 317.39994 * 17 16 15 20 20 C 1.39787 * 119.72529 * 191.41671 * 19 17 16 21 21 C 1.37904 * 119.76605 * 180.49468 * 20 19 17 22 22 C 1.38427 * 119.95221 * 359.97438 * 21 20 19 23 23 C 1.38247 * 120.48979 * 359.89925 * 22 21 20 24 24 C 1.38300 * 120.36381 * 0.02562 * 23 22 21 25 25 H 0.96998 * 119.99929 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46870 * 60.00552 * 9 7 2 27 27 H 1.09000 * 109.47713 * 300.00293 * 9 7 2 28 28 H 0.97000 * 120.00508 * 359.97438 * 10 9 7 29 29 H 1.09006 * 109.48279 * 304.89126 * 15 13 11 30 30 H 1.09001 * 109.48680 * 64.93916 * 15 13 11 31 31 H 1.08997 * 109.87227 * 183.40605 * 16 15 13 32 32 H 1.08991 * 109.87581 * 304.39263 * 16 15 13 33 33 H 1.08000 * 120.11944 * 0.49035 * 20 19 17 34 34 H 1.07996 * 120.02218 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.75390 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.81673 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5654 -5.1063 -0.0946 13 6 2.7282 -6.0271 0.1146 14 1 3.7101 -5.6950 -0.2228 15 6 2.2582 -7.1761 -0.7731 16 6 3.1766 -8.3878 -0.5669 17 6 3.0165 -8.8373 0.8708 18 8 2.9328 -10.0130 1.1553 19 6 2.9668 -7.7934 1.9130 20 6 3.0615 -8.1540 3.2603 21 6 3.0048 -7.1804 4.2352 22 6 2.8553 -5.8516 3.8771 23 6 2.7639 -5.4899 2.5459 24 6 2.8203 -6.4524 1.5545 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 3.1567 -3.4354 -0.0009 29 1 1.2357 -7.4455 -0.5081 30 1 2.2937 -6.8666 -1.8177 31 1 2.8848 -9.1928 -1.2414 32 1 4.2120 -8.1042 -0.7549 33 1 3.1784 -9.1915 3.5367 34 1 3.0771 -7.4543 5.2773 35 1 2.8109 -5.0917 4.6433 36 1 2.6470 -4.4500 2.2788 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335842182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -63.715958 kcal Electronic energy + Delta-G solvation = -20409.268799 eV Core-core repulsion = 17243.510484 eV Total energy + Delta-G solvation = -3165.758316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82362 -38.97588 -38.02364 -35.36619 -34.26711 -32.46716 -31.44215 -30.59165 -28.79226 -27.02993 -23.69479 -23.30983 -22.89311 -21.54998 -19.80226 -19.14906 -17.53597 -16.79927 -16.29970 -15.94367 -15.65180 -15.28670 -14.79096 -14.49426 -14.41040 -14.14810 -13.91935 -13.33181 -13.24802 -13.10244 -12.39896 -12.27373 -12.06228 -11.94843 -11.85762 -11.37944 -11.19991 -11.05585 -10.98033 -10.91797 -10.38042 -9.67084 -9.45647 -9.31157 -9.04064 -8.81144 -8.71858 -7.99672 -6.22751 -4.30205 0.59316 1.25539 2.31343 3.15288 3.19369 3.26850 3.29360 3.59749 3.89474 4.00616 4.30417 4.48184 4.56550 4.77248 4.94126 5.01305 5.03441 5.13788 5.21042 5.25371 5.27576 5.41005 5.54455 5.61520 5.80573 5.86849 5.93474 6.12958 6.25509 6.32820 6.40472 6.80275 7.21562 7.30918 7.38485 7.43071 7.58385 7.89640 8.49944 8.69298 8.96300 9.36808 10.87358 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026502 B = 0.004426 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.261374 B = 6324.627271 C = 6943.446295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.711 5.711 11 C 0.507 3.493 12 O -0.545 6.545 13 C -0.077 4.077 14 H 0.107 0.893 15 C -0.100 4.100 16 C -0.162 4.162 17 C 0.404 3.596 18 O -0.459 6.459 19 C -0.167 4.167 20 C -0.065 4.065 21 C -0.137 4.137 22 C -0.081 4.081 23 C -0.128 4.128 24 C -0.013 4.013 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.391 0.609 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 -13.016 3.593 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.290 3.710 12 O -0.423 6.423 13 C -0.099 4.099 14 H 0.124 0.876 15 C -0.138 4.138 16 C -0.200 4.200 17 C 0.282 3.718 18 O -0.335 6.335 19 C -0.168 4.168 20 C -0.083 4.083 21 C -0.155 4.155 22 C -0.099 4.099 23 C -0.146 4.146 24 C -0.014 4.014 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.225 0.775 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.519 -13.618 3.680 16.479 hybrid contribution 0.838 1.294 0.085 1.545 sum 9.357 -12.324 3.765 15.925 Atomic orbital electron populations 1.69982 1.06124 1.27277 1.48795 1.24946 0.94893 0.99473 0.94626 0.86371 0.79834 0.82968 0.77802 1.19609 1.20777 1.20786 1.21242 0.93294 0.90359 1.53347 0.91790 1.19148 0.88290 0.81914 0.97872 1.46594 1.11231 1.06010 1.72066 1.20083 0.89060 0.84063 0.77777 1.90678 1.16869 1.84616 1.50118 1.20289 1.00700 0.96129 0.92753 0.87554 1.21397 1.00332 0.91864 1.00180 1.22331 1.02505 1.00125 0.95008 1.22772 0.70300 0.87640 0.91086 1.90506 1.37288 1.20087 1.85589 1.20195 1.08081 0.93705 0.94864 1.21334 0.95576 0.99972 0.91395 1.21161 1.01890 0.92953 0.99514 1.21398 0.95757 0.96423 0.96306 1.21412 1.00045 1.00439 0.92662 1.19637 0.95504 0.92148 0.94107 0.92445 0.95359 0.95514 0.77549 0.89614 0.89584 0.88410 0.87820 0.85034 0.85395 0.85271 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.08 9.28 -34.44 -0.32 -14.39 16 8 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 9 C 0.25 6.23 5.43 -5.19 -0.03 6.21 16 10 N -0.71 -13.73 4.83 -61.47 -0.30 -14.03 16 11 C 0.51 9.36 5.56 -10.98 -0.06 9.30 16 12 O -0.54 -12.50 16.20 5.56 0.09 -12.41 16 13 C -0.08 -1.04 2.61 -93.26 -0.24 -1.28 16 14 H 0.11 1.11 8.06 -51.92 -0.42 0.70 16 15 C -0.10 -1.21 4.93 -26.70 -0.13 -1.34 16 16 C -0.16 -1.63 6.19 -27.27 -0.17 -1.80 16 17 C 0.40 5.24 6.89 -30.11 -0.21 5.03 16 18 O -0.46 -7.00 17.27 5.58 0.10 -6.90 16 19 C -0.17 -2.23 5.82 -105.00 -0.61 -2.84 16 20 C -0.06 -0.79 9.61 -39.12 -0.38 -1.16 16 21 C -0.14 -1.51 10.04 -39.63 -0.40 -1.91 16 22 C -0.08 -0.97 10.03 -39.51 -0.40 -1.37 16 23 C -0.13 -1.79 9.09 -39.56 -0.36 -2.15 16 24 C -0.01 -0.18 5.50 -104.23 -0.57 -0.75 16 25 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.39 6.37 8.26 -40.82 -0.34 6.04 16 29 H 0.09 1.23 7.66 -51.93 -0.40 0.83 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.46 7.72 -52.49 -0.41 1.06 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.14 2.10 6.61 -52.49 -0.35 1.75 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -32.25 309.90 -8.09 -40.34 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.40 Total: 4.63 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.97 Total: -6.85 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.44 Total: -38.65 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.19 Total: -19.32 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.25 -8.09 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335842182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.375 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds