Wall clock time and date at job start Mon Mar 30 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 C 1.53005 * 109.46906 * 180.02562 * 3 2 1 5 5 N 1.46500 * 110.45594 * 307.60672 * 4 3 2 6 6 C 1.34776 * 119.99750 * 178.09983 * 5 4 3 7 7 O 1.21276 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99668 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47051 * 179.97438 * 8 6 5 10 10 C 1.76206 * 100.00123 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99967 * 0.02562 * 10 9 8 12 12 C 1.38796 * 119.99794 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00547 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99735 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47143 * 90.00156 * 14 12 10 16 16 H 1.48503 * 109.46873 * 210.00333 * 14 12 10 17 17 H 1.48498 * 109.46934 * 329.99969 * 14 12 10 18 18 C 1.54507 * 110.50897 * 185.00419 * 4 3 2 19 19 C 1.54483 * 104.06211 * 241.35344 * 18 4 3 20 20 O 1.44428 * 104.89902 * 335.96812 * 19 18 4 21 21 C 1.44688 * 105.13885 * 40.49479 * 20 19 18 22 22 H 1.09000 * 109.46792 * 300.00022 * 1 2 3 23 23 H 1.09009 * 109.46939 * 59.99723 * 1 2 3 24 24 H 1.08994 * 109.47228 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46820 * 240.00764 * 2 1 3 26 26 H 1.08995 * 109.47507 * 120.00363 * 2 1 3 27 27 H 1.09000 * 109.47319 * 60.00301 * 3 2 1 28 28 H 1.08999 * 109.47511 * 299.99824 * 3 2 1 29 29 H 0.97000 * 119.99824 * 358.09215 * 5 4 3 30 30 H 1.08999 * 109.47442 * 299.99960 * 8 6 5 31 31 H 1.09005 * 109.47259 * 59.99985 * 8 6 5 32 32 H 0.96993 * 120.00366 * 180.02562 * 13 12 10 33 33 H 1.09005 * 110.51421 * 122.70915 * 18 4 3 34 34 H 1.09004 * 110.63217 * 0.05211 * 18 4 3 35 35 H 1.09002 * 110.37322 * 94.85326 * 19 18 4 36 36 H 1.08999 * 110.37312 * 217.08002 * 19 18 4 37 37 H 1.08996 * 110.35300 * 200.67684 * 21 20 19 38 38 H 1.08999 * 110.44929 * 78.41250 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0825 0.6046 1.0864 6 6 5.4110 0.4374 1.2394 7 8 6.1823 0.9801 0.4769 8 6 5.9382 -0.4239 2.3580 9 16 7.7469 -0.4508 2.2978 10 6 8.0834 -1.4988 3.6737 11 1 7.2689 -1.9044 4.2555 12 6 9.3952 -1.8040 4.0091 13 7 10.3880 -1.3102 3.2998 14 14 9.7519 -2.9157 5.4674 15 1 9.8015 -4.3284 5.0124 16 1 11.0585 -2.5424 6.0664 17 1 8.6794 -2.7599 6.4826 18 6 4.1115 2.8840 0.1256 19 6 4.9153 3.0984 -1.1761 20 8 5.2815 1.7702 -1.6094 21 6 4.1107 0.9563 -1.3636 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.4656 0.1704 1.6961 30 1 5.6122 -0.0165 3.3150 31 1 5.5562 -1.4387 2.2461 32 1 11.3046 -1.5238 3.5339 33 1 4.7624 2.9728 0.9954 34 1 3.2906 3.5984 0.1895 35 1 4.2956 3.5857 -1.9289 36 1 5.8075 3.6923 -0.9777 37 1 4.3859 -0.0969 -1.3088 38 1 3.3669 1.1133 -2.1448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342627570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:43 Heat of formation + Delta-G solvation = -113.496559 kcal Electronic energy + Delta-G solvation = -19498.253185 eV Core-core repulsion = 16465.780171 eV Total energy + Delta-G solvation = -3032.473013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.64872 -39.16588 -36.84468 -34.59324 -34.25694 -32.37380 -30.64011 -29.50319 -27.65406 -26.90785 -24.05917 -22.47825 -22.16160 -20.53271 -19.84776 -17.91284 -17.66749 -16.88463 -16.69085 -16.48653 -16.21061 -16.10373 -15.55829 -15.28408 -14.69966 -14.48927 -14.23913 -13.89670 -13.62512 -13.28261 -13.16921 -13.14730 -12.88807 -12.62571 -12.53249 -12.47165 -12.13322 -11.92598 -11.71451 -11.48902 -11.37962 -11.14524 -10.78998 -10.59259 -10.25225 -9.87373 -8.65366 -8.34667 -6.12348 1.27655 1.41690 1.47302 1.57859 1.74955 2.26213 2.33026 2.99210 3.12099 3.33278 3.56857 3.73002 3.86522 4.05022 4.16182 4.21073 4.27125 4.32125 4.40866 4.48356 4.51822 4.69769 4.76676 4.82146 4.84448 4.92913 4.94425 5.02784 5.15893 5.31386 5.35873 5.40880 5.50424 5.63716 6.04451 6.19263 6.60035 7.06395 7.40862 8.74553 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026687 B = 0.004378 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.958253 B = 6394.566796 C = 7156.046001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.103 4.103 4 C 0.148 3.852 5 N -0.708 5.708 6 C 0.522 3.478 7 O -0.524 6.524 8 C -0.129 4.129 9 S -0.148 6.148 10 C -0.548 4.548 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.258 1.258 18 C -0.153 4.153 19 C 0.048 3.952 20 O -0.387 6.387 21 C 0.042 3.958 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.412 0.588 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.271 0.729 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.285 5.435 -5.395 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.140 4.140 4 C 0.061 3.939 5 N -0.364 5.364 6 C 0.306 3.694 7 O -0.398 6.398 8 C -0.281 4.281 9 S 0.079 5.921 10 C -0.696 4.696 11 H 0.099 0.901 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.182 1.182 18 C -0.191 4.191 19 C -0.029 4.029 20 O -0.306 6.306 21 C -0.036 4.036 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.250 0.750 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.625 6.293 -6.787 23.522 hybrid contribution -0.316 -1.403 1.967 2.437 sum -21.941 4.890 -4.820 22.990 Atomic orbital electron populations 1.21738 0.94410 1.02019 1.02442 1.21569 0.96900 0.95975 1.02257 1.21854 0.88501 0.98574 1.05104 1.21846 0.95798 0.89607 0.86634 1.45926 1.05490 1.51851 1.33144 1.20036 0.83260 0.81160 0.84895 1.90835 1.57185 1.47569 1.44221 1.23386 1.00858 1.02964 1.00862 1.85592 0.98808 1.65585 1.42107 1.23218 0.95769 1.34574 1.16038 0.90119 1.26124 0.94732 0.97699 1.00531 1.70186 0.99897 1.44115 1.40646 0.84959 0.78007 0.77838 0.77200 1.19287 1.20238 1.18183 1.23292 1.00604 0.96667 0.98554 1.23356 0.99120 0.85391 0.95045 1.89317 1.36137 1.20506 1.84610 1.23872 0.88198 0.95688 0.95854 0.92074 0.92026 0.92713 0.92243 0.92016 0.89314 0.88195 0.75031 0.87874 0.87955 0.92009 0.93033 0.86876 0.89960 0.91332 0.91634 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.52 5.57 30.59 0.17 -1.35 16 3 C -0.10 -1.21 4.14 30.60 0.13 -1.08 16 4 C 0.15 3.12 0.87 4.62 0.00 3.12 16 5 N -0.71 -17.73 4.81 -418.34 -2.01 -19.75 16 6 C 0.52 19.43 6.93 87.66 0.61 20.04 16 7 O -0.52 -24.19 11.94 19.09 0.23 -23.96 16 8 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 9 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.55 -31.92 9.50 67.95 0.65 -31.27 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.80 5.49 84.86 0.47 1.27 16 13 N -0.91 -57.01 13.22 21.65 0.29 -56.73 16 14 Si 1.00 44.21 29.55 68.60 2.03 46.23 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 C -0.15 -3.48 5.78 31.61 0.18 -3.30 16 19 C 0.05 1.26 7.37 72.49 0.53 1.79 16 20 O -0.39 -13.48 9.55 -126.87 -1.21 -14.69 16 21 C 0.04 1.08 5.47 72.48 0.40 1.47 16 22 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 24 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 0.80 7.63 -2.39 -0.02 0.78 16 26 H 0.06 0.76 6.55 -2.39 -0.02 0.75 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.86 7.96 -2.39 -0.02 0.84 16 29 H 0.41 7.70 6.99 -92.71 -0.65 7.05 16 30 H 0.10 3.81 8.14 -2.40 -0.02 3.80 16 31 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.05 1.52 7.20 -2.38 -0.02 1.50 16 34 H 0.11 1.67 7.74 -2.38 -0.02 1.66 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.95 7.97 -2.39 -0.02 1.94 16 38 H 0.09 1.70 7.74 -2.39 -0.02 1.68 16 Total: -1.00 -79.11 319.19 2.84 -76.27 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.40 Total: 16.97 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.29 Total: -14.78 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.72 Total: -76.47 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.98 Total: -38.66 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -79.11 2.84 -76.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342627570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.226 kcal (2) G-P(sol) polarization free energy of solvation -79.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds