Wall clock time and date at job start Mon Mar 30 2020 01:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.54579 * 2 1 4 4 N 1.46498 * 109.47059 * 59.99574 * 3 2 1 5 5 C 1.34777 * 119.99828 * 179.72339 * 4 3 2 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 3 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 3 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00163 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47098 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47081 * 120.00118 * 13 11 9 16 16 H 1.48496 * 109.47496 * 240.00528 * 13 11 9 17 17 C 1.53185 * 109.54312 * 120.17599 * 2 1 3 18 18 C 1.53112 * 109.15468 * 63.06035 * 17 2 1 19 19 O 1.42905 * 109.48487 * 57.48035 * 18 17 2 20 20 C 1.42908 * 114.09418 * 298.88485 * 19 18 17 21 21 C 1.53090 * 109.41702 * 61.16135 * 20 19 18 22 22 H 1.09004 * 109.46928 * 59.99870 * 1 2 3 23 23 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47190 * 300.00261 * 1 2 3 25 25 H 1.09004 * 109.47066 * 299.99842 * 3 2 1 26 26 H 1.08994 * 109.46974 * 179.97438 * 3 2 1 27 27 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 28 28 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 29 29 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 30 30 H 0.96991 * 119.99795 * 179.97438 * 12 11 9 31 31 H 1.08994 * 109.52527 * 182.87923 * 17 2 1 32 32 H 1.08998 * 109.52248 * 303.07321 * 17 2 1 33 33 H 1.08997 * 109.40702 * 297.49352 * 18 17 2 34 34 H 1.09000 * 109.48547 * 177.50642 * 18 17 2 35 35 H 1.08998 * 109.47994 * 301.17671 * 20 19 18 36 36 H 1.09007 * 109.48526 * 181.14850 * 20 19 18 37 37 H 1.08996 * 109.52064 * 182.48508 * 21 20 19 38 38 H 1.08996 * 109.57358 * 62.32447 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4418 0.0000 4 7 1.5543 2.1330 1.1961 5 6 1.8862 3.4213 1.4122 6 8 2.5842 4.0099 0.6138 7 6 1.3899 4.1307 2.6457 8 16 2.0003 5.8346 2.6486 9 6 1.2897 6.4115 4.1543 10 1 0.6855 5.7481 4.7554 11 6 1.5074 7.7183 4.5684 12 7 2.2442 8.5268 3.8361 13 14 0.7536 8.3301 6.1643 14 1 -0.0254 7.2348 6.7957 15 1 1.8330 8.7648 7.0870 16 1 -0.1457 9.4770 5.8793 17 6 2.0424 -0.7256 1.2480 18 6 1.5930 -2.1885 1.1986 19 8 2.0771 -2.7957 -0.0010 20 6 1.5913 -2.1878 -1.1997 21 6 2.0424 -0.7257 -1.2479 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.6792 1.9561 -0.8900 26 1 3.1318 1.4404 0.0005 27 1 0.9963 1.6623 1.8348 28 1 0.2999 4.1355 2.6483 29 1 1.7529 3.6127 3.5335 30 1 2.3959 9.4400 4.1254 31 1 3.1311 -0.6811 1.2740 32 1 1.6359 -0.2482 2.1396 33 1 0.5040 -2.2335 1.2151 34 1 1.9920 -2.7208 2.0621 35 1 0.5023 -2.2330 -1.2146 36 1 1.9890 -2.7197 -2.0641 37 1 1.6360 -0.2484 -2.1395 38 1 3.1311 -0.6802 -1.2744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346798091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:38 Heat of formation + Delta-G solvation = -124.790507 kcal Electronic energy + Delta-G solvation = -18920.662184 eV Core-core repulsion = 15887.699428 eV Total energy + Delta-G solvation = -3032.962756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33137 -40.19175 -37.15611 -34.59685 -34.41868 -32.06456 -31.12248 -28.78158 -27.85974 -27.39918 -24.61826 -23.65428 -21.73013 -19.97073 -19.55680 -18.00373 -17.44856 -16.90800 -16.88730 -16.75788 -16.54767 -15.90414 -15.80636 -15.50927 -14.91987 -14.84744 -14.44164 -14.27028 -13.87870 -13.32631 -13.16490 -13.12376 -12.91182 -12.87901 -12.61390 -12.34265 -12.22459 -12.06140 -11.71946 -11.42694 -11.16573 -11.16171 -10.96344 -10.36140 -10.27711 -10.12910 -8.67455 -8.35183 -6.13413 1.26848 1.41530 1.47190 1.58324 1.60349 2.25431 2.29402 2.99123 3.01512 3.31590 3.55236 3.61842 3.73683 3.96994 4.09848 4.19354 4.28174 4.31118 4.36876 4.49569 4.58796 4.65534 4.68913 4.71621 4.82078 4.83536 4.96828 5.01541 5.06969 5.16999 5.25082 5.41666 5.42567 5.45903 6.19708 6.30659 6.47823 7.06237 7.22781 8.74335 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.044464 B = 0.003222 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.574298 B = 8687.279241 C = 9026.933853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C 0.133 3.867 4 N -0.708 5.708 5 C 0.532 3.468 6 O -0.568 6.568 7 C -0.129 4.129 8 S -0.153 6.153 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 1.000 3.000 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.147 4.147 18 C 0.059 3.941 19 O -0.404 6.404 20 C 0.060 3.940 21 C -0.143 4.143 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.413 0.587 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.271 0.729 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 -23.883 -5.860 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C 0.010 3.990 4 N -0.363 5.363 5 C 0.318 3.682 6 O -0.446 6.446 7 C -0.280 4.280 8 S 0.074 5.926 9 C -0.693 4.693 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.822 3.178 14 H -0.179 1.179 15 H -0.200 1.200 16 H -0.199 1.199 17 C -0.184 4.184 18 C -0.017 4.017 19 O -0.324 6.324 20 C -0.017 4.017 21 C -0.181 4.181 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.252 0.748 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.671 -22.933 -7.220 24.493 hybrid contribution -1.136 0.300 1.833 2.178 sum -5.807 -22.633 -5.387 23.979 Atomic orbital electron populations 1.22014 0.92678 1.02981 1.02829 1.20767 0.97090 0.92069 0.96599 1.21407 0.98432 0.91981 0.87225 1.45764 1.53818 1.10638 1.26100 1.20088 0.79407 0.82330 0.86363 1.90693 1.38976 1.66975 1.47957 1.23370 1.05345 1.00055 0.99273 1.85602 1.69143 1.05597 1.32251 1.23242 1.37258 1.00676 1.08160 0.89844 1.26147 0.95334 0.95782 1.01967 1.70192 1.37857 1.07041 1.39730 0.84887 0.78009 0.78369 0.76557 1.17944 1.19977 1.19941 1.22274 1.01568 0.96734 0.97856 1.22712 0.99267 0.92261 0.87500 1.87918 1.72491 1.57230 1.14734 1.22714 0.99230 0.92181 0.87550 1.22185 1.01730 0.96628 0.97536 0.92043 0.90681 0.91906 0.92226 0.92957 0.74843 0.87145 0.87214 0.91996 0.92020 0.89803 0.91475 0.88162 0.91584 0.87842 0.89469 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 7.76 71.98 0.56 -1.23 16 2 C -0.06 -0.96 0.53 -52.06 -0.03 -0.99 16 3 C 0.13 2.98 4.57 86.38 0.40 3.37 16 4 N -0.71 -17.56 4.99 -463.07 -2.31 -19.87 16 5 C 0.53 19.61 7.85 87.66 0.69 20.29 16 6 O -0.57 -26.59 15.86 -3.04 -0.05 -26.64 16 7 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 8 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 9 C -0.55 -31.11 9.50 67.96 0.65 -30.46 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.70 5.49 84.86 0.47 1.17 16 12 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 13 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 14 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 C -0.15 -2.10 4.70 30.69 0.14 -1.96 16 18 C 0.06 0.76 6.57 72.02 0.47 1.23 16 19 O -0.40 -6.78 10.77 -148.98 -1.60 -8.39 16 20 C 0.06 0.73 6.57 72.01 0.47 1.21 16 21 C -0.14 -1.95 4.92 30.68 0.15 -1.80 16 22 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.07 0.71 5.02 -2.38 -0.01 0.70 16 24 H 0.06 0.74 6.87 -2.39 -0.02 0.72 16 25 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.41 7.47 6.21 -92.71 -0.58 6.89 16 28 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 29 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.27 15.42 8.31 -92.72 -0.77 14.65 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.05 6.98 -2.39 -0.02 1.03 16 33 H 0.07 0.67 6.61 -2.39 -0.02 0.66 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 0.64 6.60 -2.39 -0.02 0.63 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -76.03 316.72 2.08 -73.96 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.48 Total: 14.75 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.41 Total: -13.81 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.02 Total: -75.68 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.65 Total: -35.03 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -76.03 2.08 -73.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346798091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.833 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds