Wall clock time and date at job start Mon Mar 30 2020 01:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00299 * 2 1 4 4 C 1.53000 * 109.52548 * 60.08133 * 3 2 1 5 5 C 1.53045 * 109.49773 * 180.16000 * 3 2 1 6 6 C 1.53038 * 109.53516 * 58.58389 * 5 3 2 7 7 C 1.53194 * 109.31101 * 61.36880 * 6 5 3 8 8 N 1.46924 * 108.77334 * 305.36035 * 7 6 5 9 9 C 1.34787 * 120.63033 * 233.88527 * 8 7 6 10 10 O 1.21276 * 119.99928 * 179.72235 * 9 8 7 11 11 C 1.50703 * 119.99759 * 359.72119 * 9 8 7 12 12 S 1.80999 * 109.46877 * 180.02562 * 11 9 8 13 13 C 1.76200 * 99.99936 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99895 * 0.02562 * 13 12 11 15 15 C 1.38797 * 119.99798 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00049 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00026 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47610 * 89.99528 * 17 15 13 19 19 H 1.48501 * 109.47277 * 210.00138 * 17 15 13 20 20 H 1.48503 * 109.46693 * 329.99536 * 17 15 13 21 21 C 1.46926 * 118.73991 * 53.61035 * 8 7 6 22 22 H 1.09003 * 109.46464 * 59.99748 * 1 2 3 23 23 H 1.08988 * 109.47121 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46757 * 300.00629 * 1 2 3 25 25 H 1.09006 * 109.46759 * 299.91917 * 4 3 2 26 26 H 1.08997 * 109.47112 * 59.91443 * 4 3 2 27 27 H 1.08995 * 109.47318 * 179.97438 * 4 3 2 28 28 H 1.08994 * 109.45779 * 178.60705 * 5 3 2 29 29 H 1.08999 * 109.45805 * 298.57083 * 5 3 2 30 30 H 1.09005 * 109.49668 * 181.31620 * 6 5 3 31 31 H 1.09001 * 109.50363 * 301.41275 * 6 5 3 32 32 H 1.09004 * 109.58535 * 185.57376 * 7 6 5 33 33 H 1.08994 * 109.59149 * 65.14853 * 7 6 5 34 34 H 1.08998 * 109.47136 * 299.99814 * 11 9 8 35 35 H 1.09001 * 109.47288 * 59.99840 * 11 9 8 36 36 H 0.97005 * 119.99936 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.58178 * 66.18066 * 21 8 7 38 38 H 1.08998 * 109.58625 * 186.46082 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5613 2.0652 1.2498 5 6 3.5360 1.1852 -0.0040 6 6 3.9840 0.3969 -1.2369 7 6 3.5548 1.1475 -2.5016 8 7 2.1080 1.3949 -2.4365 9 6 1.2993 1.0085 -3.4431 10 8 0.1060 1.2140 -3.3752 11 6 1.8779 0.3210 -4.6530 12 16 0.5490 -0.0690 -5.8183 13 6 1.4815 -0.8416 -7.0982 14 1 2.5517 -0.9464 -6.9986 15 6 0.8404 -1.3165 -8.2340 16 7 -0.4643 -1.1901 -8.3547 17 14 1.8288 -2.1362 -9.5906 18 1 1.9121 -3.5957 -9.3298 19 1 1.1630 -1.9041 -10.8976 20 1 3.1972 -1.5603 -9.6231 21 6 1.5587 2.0662 -1.2506 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.4748 2.1530 1.2508 26 1 1.8828 1.5235 2.1394 27 1 2.0055 3.0605 1.2492 28 1 3.9786 2.1809 -0.0290 29 1 3.8617 0.6657 0.8971 30 1 5.0689 0.2916 -1.2270 31 1 3.5221 -0.5903 -1.2253 32 1 3.7832 0.5438 -3.3800 33 1 4.0857 2.0976 -2.5606 34 1 2.6008 0.9798 -5.1341 35 1 2.3738 -0.5996 -4.3453 36 1 -0.9124 -1.5224 -9.1483 37 1 1.9269 3.0912 -1.2076 38 1 0.4701 2.0709 -1.3048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348028609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:22 Heat of formation + Delta-G solvation = -107.388828 kcal Electronic energy + Delta-G solvation = -19755.024552 eV Core-core repulsion = 16722.816390 eV Total energy + Delta-G solvation = -3032.208162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53750 -39.58756 -37.15115 -34.59555 -34.00891 -32.58249 -31.02584 -28.17621 -27.78353 -27.25784 -26.12535 -23.10696 -21.43125 -20.34396 -19.47085 -18.20080 -17.58986 -16.89288 -16.78939 -16.54132 -16.42860 -15.97707 -15.77856 -15.03632 -14.79932 -14.47098 -14.35936 -13.88165 -13.70248 -13.56698 -13.33982 -13.17368 -13.02568 -12.89571 -12.76516 -12.58158 -12.30485 -11.92873 -11.81634 -11.71175 -11.24777 -11.14938 -10.96655 -10.54861 -10.27908 -9.57436 -8.68407 -8.35279 -6.13949 1.24669 1.42314 1.45058 1.55624 1.58014 2.10089 2.26876 2.84429 2.98895 3.24379 3.54877 3.76637 3.86004 3.87319 4.08445 4.20482 4.24073 4.37931 4.40127 4.43448 4.49251 4.54452 4.61298 4.75294 4.79219 4.82460 4.89918 4.93335 5.08703 5.21172 5.25015 5.40648 5.43029 5.55174 6.18896 6.24724 6.32644 7.05743 7.14187 8.74119 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034015 B = 0.004388 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.964480 B = 6380.009913 C = 6761.879574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.093 3.907 4 C -0.171 4.171 5 C -0.100 4.100 6 C -0.129 4.129 7 C 0.097 3.903 8 N -0.600 5.600 9 C 0.533 3.467 10 O -0.567 6.567 11 C -0.122 4.122 12 S -0.150 6.150 13 C -0.547 4.547 14 H 0.082 0.918 15 C 0.014 3.986 16 N -0.912 5.912 17 Si 0.999 3.001 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.257 1.257 21 C 0.082 3.918 22 H 0.026 0.974 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.271 0.729 37 H 0.098 0.902 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.990 6.548 19.269 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.053 3.947 4 C -0.228 4.228 5 C -0.137 4.137 6 C -0.167 4.167 7 C -0.024 4.024 8 N -0.333 5.333 9 C 0.320 3.680 10 O -0.446 6.446 11 C -0.273 4.273 12 S 0.077 5.923 13 C -0.694 4.694 14 H 0.100 0.900 15 C -0.190 4.190 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.181 1.181 21 C -0.041 4.041 22 H 0.044 0.956 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.213 6.673 19.278 22.814 hybrid contribution 0.916 -0.652 -1.117 1.585 sum 11.129 6.021 18.161 22.134 Atomic orbital electron populations 1.22793 0.81334 1.02789 1.00204 1.87927 1.19736 1.28251 1.94948 1.22133 0.95717 0.83294 0.93519 1.22317 1.02095 1.01719 0.96691 1.21588 0.90541 1.02576 0.98969 1.21839 1.02428 0.98908 0.93508 1.22096 0.78281 1.01997 1.00059 1.47961 1.08794 1.58752 1.17807 1.20092 0.86132 0.77825 0.83915 1.90642 1.16915 1.56787 1.80245 1.23344 1.03343 1.03489 0.97095 1.85545 1.12542 1.76986 1.17238 1.23191 0.96188 1.44675 1.05386 0.90010 1.26131 0.96282 0.95990 1.00620 1.70188 1.10016 1.45118 1.29494 0.84944 0.78316 0.78398 0.76261 1.19313 1.20192 1.18093 1.22379 1.00254 0.96938 0.84526 0.95553 0.90014 0.91767 0.92413 0.90579 0.89129 0.87806 0.89912 0.87770 0.93128 0.89822 0.88464 0.87535 0.88103 0.91967 0.88386 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.22 113.37 1.16 1.81 16 2 O -0.39 -10.30 9.54 -148.98 -1.42 -11.72 16 3 C 0.09 1.84 0.73 -10.72 -0.01 1.83 16 4 C -0.17 -2.38 8.26 71.98 0.59 -1.79 16 5 C -0.10 -1.44 4.92 30.62 0.15 -1.29 16 6 C -0.13 -2.20 5.94 30.67 0.18 -2.02 16 7 C 0.10 2.00 6.34 86.36 0.55 2.55 16 8 N -0.60 -17.33 2.91 -818.91 -2.39 -19.71 16 9 C 0.53 21.31 7.72 87.66 0.68 21.99 16 10 O -0.57 -27.44 14.87 -3.02 -0.04 -27.48 16 11 C -0.12 -5.14 4.50 71.24 0.32 -4.82 16 12 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 13 C -0.55 -31.81 9.50 67.95 0.65 -31.17 16 14 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 15 C 0.01 0.83 5.49 84.86 0.47 1.30 16 16 N -0.91 -56.70 13.22 21.65 0.29 -56.42 16 17 Si 1.00 44.01 29.55 68.60 2.03 46.03 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 C 0.08 1.99 4.94 86.36 0.43 2.41 16 22 H 0.03 0.84 5.90 -2.39 -0.01 0.83 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.06 1.31 6.42 -2.39 -0.02 1.29 16 25 H 0.06 0.87 6.55 -2.38 -0.02 0.86 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.05 1.17 7.61 -2.39 -0.02 1.15 16 32 H 0.08 1.83 5.93 -2.38 -0.01 1.81 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 4.06 7.95 -2.40 -0.02 4.04 16 35 H 0.10 3.99 7.69 -2.39 -0.02 3.97 16 36 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 2.15 5.15 -2.39 -0.01 2.14 16 Total: -1.00 -77.75 315.01 3.51 -74.24 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 1.04 Total: 14.03 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 5.16 Total: -9.21 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.10 Total: -76.13 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.47 Total: -39.20 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.75 3.51 -74.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348028609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.148 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds