Wall clock time and date at job start Mon Mar 30 2020 01:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00285 * 2 1 4 4 H 1.48503 * 109.47047 * 240.00383 * 3 2 1 5 5 H 1.48503 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47258 * 120.00052 * 3 2 1 7 7 C 1.37885 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99466 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47264 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.47233 * 180.02562 * 11 10 9 13 13 C 1.48653 * 111.00081 * 55.44819 * 12 11 10 14 14 C 1.54738 * 104.66412 * 159.81933 * 13 12 11 15 15 H 1.08998 * 110.36580 * 96.02868 * 14 13 12 16 16 C 1.53066 * 108.56013 * 217.77712 * 14 13 12 17 17 C 1.54944 * 109.09460 * 143.70995 * 16 14 13 18 18 S 1.83821 * 101.21373 * 318.33258 * 17 16 14 19 19 O 1.42098 * 109.61637 * 283.34649 * 18 17 16 20 20 O 1.42100 * 109.61555 * 149.38930 * 18 17 16 21 21 C 1.54830 * 104.61897 * 337.31524 * 14 13 12 22 22 H 1.09001 * 112.09775 * 118.71661 * 21 14 13 23 23 C 1.48856 * 110.99817 * 170.00285 * 12 11 10 24 24 H 0.96997 * 119.99867 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47074 * 59.99552 * 9 7 2 26 26 H 1.09006 * 109.47081 * 299.99917 * 9 7 2 27 27 H 1.09007 * 109.47328 * 60.00061 * 10 9 7 28 28 H 1.08993 * 109.47225 * 299.99685 * 10 9 7 29 29 H 1.09000 * 109.46746 * 59.99528 * 11 10 9 30 30 H 1.09001 * 109.46708 * 299.99968 * 11 10 9 31 31 H 1.09000 * 110.39881 * 41.02519 * 13 12 11 32 32 H 1.09000 * 110.49858 * 278.66380 * 13 12 11 33 33 H 1.09001 * 109.55082 * 263.62725 * 16 14 13 34 34 H 1.09004 * 109.55599 * 23.82501 * 16 14 13 35 35 H 1.09000 * 111.07483 * 76.31918 * 17 16 14 36 36 H 1.09004 * 111.07152 * 200.34934 * 17 16 14 37 37 H 1.09002 * 110.56158 * 79.77847 * 23 12 11 38 38 H 1.09002 * 110.55399 * 316.94826 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9872 0.0001 12 7 2.4347 -6.1037 0.0007 13 6 3.3791 -5.9966 1.1437 14 6 3.9400 -7.4274 1.3238 15 1 4.8935 -7.5291 0.8055 16 6 4.1000 -7.7031 2.8209 17 6 3.7553 -9.1872 3.1027 18 16 2.2762 -9.4193 2.0362 19 8 1.1448 -8.8199 2.6526 20 8 2.2168 -10.7670 1.5895 21 6 2.8754 -8.3485 0.6793 22 1 3.2781 -8.9160 -0.1598 23 6 1.7411 -7.3984 0.2426 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8532 -5.0451 -0.8896 30 1 0.8538 -5.0446 0.8904 31 1 2.8521 -5.6791 2.0435 32 1 4.1839 -5.2997 0.9098 33 1 5.1291 -7.5045 3.1205 34 1 3.4252 -7.0590 3.3847 35 1 4.5684 -9.8440 2.7935 36 1 3.5086 -9.3396 4.1535 37 1 1.2718 -7.7582 -0.6730 38 1 1.0022 -7.2941 1.0371 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353119672.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:56 Heat of formation + Delta-G solvation = -71.612627 kcal Electronic energy + Delta-G solvation = -19404.849999 eV Core-core repulsion = 16374.193210 eV Total energy + Delta-G solvation = -3030.656790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.65607 -37.27076 -36.29767 -35.51783 -33.64202 -31.96532 -29.79667 -28.97282 -26.19112 -24.21583 -23.22792 -21.35211 -20.58088 -19.84710 -18.92024 -17.44580 -16.84095 -16.29700 -16.15064 -15.61071 -14.95358 -14.53269 -14.41712 -14.10594 -13.92285 -13.66720 -13.15833 -12.59871 -12.42841 -12.29311 -12.19496 -11.97739 -11.92514 -11.60009 -11.48889 -11.32375 -11.06524 -10.82594 -10.81708 -10.60926 -10.49255 -10.38113 -9.70704 -9.36176 -9.08412 -8.39851 -8.34792 -6.00098 -4.02623 -0.24224 2.19815 3.22517 3.32776 3.37334 3.39503 3.59822 3.90585 4.03418 4.20800 4.35198 4.35995 4.46403 4.58993 4.81857 5.01956 5.09647 5.25024 5.35557 5.39086 5.50588 5.51083 5.56620 5.65381 5.81421 5.85791 5.92870 6.24042 6.58855 6.66741 6.84141 7.11349 7.22541 7.66589 7.81186 7.99641 8.42220 9.04191 9.61333 11.11307 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041374 B = 0.003518 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.584058 B = 7956.758813 C = 8185.334994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.038 3.962 12 N -0.498 5.498 13 C 0.031 3.969 14 C -0.081 4.081 15 H 0.105 0.895 16 C -0.123 4.123 17 C -0.578 4.578 18 S 2.377 3.623 19 O -0.925 6.925 20 O -0.941 6.941 21 C -0.545 4.545 22 H 0.153 0.847 23 C 0.038 3.962 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 -19.416 5.124 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.089 4.089 12 N -0.222 5.222 13 C -0.097 4.097 14 C -0.101 4.101 15 H 0.123 0.877 16 C -0.162 4.162 17 C -0.708 4.708 18 S 2.561 3.439 19 O -0.922 6.922 20 O -0.938 6.938 21 C -0.655 4.655 22 H 0.171 0.829 23 C -0.091 4.091 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.113 0.887 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.074 -19.807 4.709 21.901 hybrid contribution 0.763 1.404 0.627 1.716 sum 8.836 -18.403 5.336 21.100 Atomic orbital electron populations 1.69952 1.06067 1.26719 1.50749 1.25027 0.94841 0.99246 0.95336 0.86656 0.79577 0.83152 0.78590 1.20228 1.21292 1.20286 1.21195 0.92956 0.91041 1.50704 0.92769 1.19072 0.94006 0.91295 0.97239 1.21697 0.99280 0.92767 1.00789 1.22567 0.94285 0.90984 1.01085 1.65877 1.15393 1.01235 1.39670 1.23454 0.97467 0.94917 0.93855 1.22160 0.98984 0.95174 0.93828 0.87676 1.22242 1.06061 0.92534 0.95399 1.30539 1.20274 1.04868 1.15111 1.09521 0.78527 0.76224 0.79668 1.93644 1.45830 1.78415 1.74306 1.93597 1.87056 1.32716 1.80438 1.30993 1.06352 1.12000 1.16201 0.82870 1.23087 0.93477 0.90288 1.02265 0.92936 0.96499 0.96722 0.93364 0.92513 0.90519 0.94464 0.92547 0.88781 0.88184 0.89053 0.84520 0.84610 0.88706 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.17 4.89 -26.73 -0.13 -2.30 16 11 C 0.04 0.65 5.06 -3.82 -0.02 0.63 16 12 N -0.50 -7.07 5.51 -229.46 -1.26 -8.34 16 13 C 0.03 0.38 4.63 -1.94 -0.01 0.37 16 14 C -0.08 -0.68 3.58 -88.71 -0.32 -1.00 16 15 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 16 C -0.12 -0.82 5.86 -25.67 -0.15 -0.97 16 17 C -0.58 -3.37 7.46 38.18 0.28 -3.08 16 18 S 2.38 22.20 5.78 -107.50 -0.62 21.58 16 19 O -0.92 -12.01 16.50 -57.67 -0.95 -12.96 16 20 O -0.94 -11.59 18.16 -57.67 -1.05 -12.64 16 21 C -0.55 -4.88 4.26 -25.10 -0.11 -4.99 16 22 H 0.15 1.09 8.14 -51.93 -0.42 0.67 16 23 C 0.04 0.45 5.98 -2.07 -0.01 0.44 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.94 6.83 -51.93 -0.35 0.58 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 31 H 0.06 0.70 7.10 -51.93 -0.37 0.33 16 32 H 0.09 1.14 7.62 -51.93 -0.40 0.74 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.66 7.19 -51.93 -0.37 0.28 16 35 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.93 6.23 -51.93 -0.32 0.60 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -35.13 311.70 -10.48 -45.61 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -6.00 Total: -4.30 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -1.01 Total: -23.97 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.53 Total: -34.58 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -2.00 Total: -25.60 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 22.20 SS G_CDS: -0.62 Total: 21.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.13 -10.48 -45.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353119672.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.007 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds