Wall clock time and date at job start Mon Mar 30 2020 01:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.47258 * 2 1 4 4 C 1.38684 * 119.89953 * 269.97901 * 3 2 1 5 5 C 1.37841 * 120.65240 * 179.97438 * 4 3 2 6 6 C 1.38970 * 119.97521 * 0.04491 * 5 4 3 7 7 O 1.34912 * 133.11123 * 180.02562 * 6 5 4 8 8 C 1.33811 * 111.34529 * 179.67729 * 7 6 5 9 9 C 1.36056 * 109.84736 * 0.45637 * 8 7 6 10 10 C 1.47086 * 127.13841 * 179.83296 * 9 8 7 11 11 O 1.21641 * 119.99998 * 179.68274 * 10 9 8 12 12 N 1.34774 * 119.99812 * 359.68140 * 10 9 8 13 13 C 1.46506 * 120.00072 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47289 * 179.97438 * 13 12 10 15 15 H 1.07994 * 119.99399 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46762 * 60.00562 * 18 16 14 20 20 H 1.48506 * 109.46725 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47116 * 300.00217 * 18 16 14 22 22 C 1.40228 * 119.25538 * 359.95683 * 6 5 4 23 23 C 1.37845 * 119.89819 * 90.00014 * 3 2 1 24 24 H 1.08994 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46768 * 299.99728 * 1 2 3 26 26 H 1.08998 * 109.46857 * 60.00065 * 1 2 3 27 27 H 1.08998 * 109.46858 * 239.99492 * 2 1 3 28 28 H 1.08998 * 109.46857 * 119.99935 * 2 1 3 29 29 H 1.08000 * 119.67455 * 0.02562 * 4 3 2 30 30 H 1.08007 * 120.01230 * 179.97438 * 5 4 3 31 31 H 1.08001 * 125.07433 * 180.28293 * 8 7 6 32 32 H 0.97001 * 120.00676 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 34 34 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 35 35 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.18740 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2633 2.0724 -1.2023 5 6 2.7223 3.3720 -1.2204 6 6 2.9589 4.0415 -0.0258 7 8 3.3974 5.2841 0.2635 8 6 3.4606 5.4829 1.5853 9 6 3.0692 4.3568 2.2410 10 6 2.9976 4.1562 3.6963 11 8 2.6212 3.0903 4.1456 12 7 3.3492 5.1533 4.5321 13 6 3.2785 4.9533 5.9817 14 6 3.7224 6.2104 6.6845 15 1 4.0263 7.0721 6.1089 16 6 3.7394 6.2605 8.0623 17 7 3.3688 5.2111 8.7631 18 14 4.2904 7.8184 8.9334 19 1 3.4024 8.9433 8.5445 20 1 4.2185 7.6156 10.4028 21 1 5.6885 8.1343 8.5455 22 6 2.7247 3.3803 1.1884 23 6 2.2615 2.0686 1.1950 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0809 1.5567 -2.1335 30 1 2.8990 3.8694 -2.1626 31 1 3.7779 6.3993 2.0606 32 1 3.6498 6.0032 4.1740 33 1 2.2525 4.7202 6.2667 34 1 3.9312 4.1282 6.2670 35 1 3.3811 5.2463 9.7324 36 1 2.0815 1.5609 2.1311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355547159.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:56 Heat of formation + Delta-G solvation = -48.247523 kcal Electronic energy + Delta-G solvation = -19762.649536 eV Core-core repulsion = 16597.561981 eV Total energy + Delta-G solvation = -3165.087554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.61597 -40.32412 -39.41660 -36.21619 -34.63997 -34.53420 -33.74302 -30.90126 -29.99099 -29.12596 -25.63280 -25.05289 -23.94261 -23.41726 -21.97446 -21.20826 -19.43135 -18.23358 -18.09844 -17.35811 -17.05965 -16.78223 -16.45842 -16.02883 -15.85899 -15.47265 -15.08681 -14.52569 -14.39421 -14.17695 -14.06579 -14.00672 -13.74903 -13.43630 -12.95573 -12.68613 -12.57342 -12.27478 -12.25162 -11.94674 -11.72395 -11.53569 -11.22268 -11.05727 -10.81270 -9.96261 -9.50812 -9.26525 -8.30016 -6.47467 -0.25195 0.24784 0.71678 1.43565 1.48066 1.56076 1.61399 2.23055 2.26272 2.48516 2.69051 3.05143 3.37525 3.53321 3.78333 3.86188 4.14268 4.22159 4.31513 4.37596 4.51019 4.51874 4.74130 4.80671 5.00871 5.07605 5.10080 5.14681 5.19422 5.19749 5.32180 5.37605 5.41455 5.56988 5.60980 5.65668 5.80625 6.03282 6.61426 6.81348 7.20100 7.37384 8.82242 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.003692 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.694987 B = 7583.161587 C = 8434.663161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.090 4.090 4 C -0.086 4.086 5 C -0.093 4.093 6 C 0.023 3.977 7 O -0.177 6.177 8 C 0.102 3.898 9 C -0.266 4.266 10 C 0.569 3.431 11 O -0.599 6.599 12 N -0.697 5.697 13 C 0.268 3.732 14 C -0.557 4.557 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.988 3.012 19 H -0.260 1.260 20 H -0.287 1.287 21 H -0.261 1.261 22 C -0.117 4.117 23 C -0.096 4.096 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.178 0.822 30 H 0.169 0.831 31 H 0.261 0.739 32 H 0.409 0.591 33 H -0.011 1.011 34 H -0.011 1.011 35 H 0.269 0.731 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 -1.970 -23.786 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.023 4.023 7 O -0.076 6.076 8 C 0.033 3.967 9 C -0.271 4.271 10 C 0.358 3.642 11 O -0.483 6.483 12 N -0.347 5.347 13 C 0.145 3.855 14 C -0.595 4.595 15 H 0.107 0.893 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.185 1.185 20 H -0.212 1.212 21 H -0.185 1.185 22 C -0.118 4.118 23 C -0.115 4.115 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.195 0.805 30 H 0.187 0.813 31 H 0.277 0.723 32 H 0.245 0.755 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.078 0.922 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.384 -2.596 -23.481 23.665 hybrid contribution 0.210 0.605 1.567 1.693 sum -1.174 -1.991 -21.914 22.036 Atomic orbital electron populations 1.21751 0.94161 1.02609 1.01769 1.20591 0.96604 0.90794 1.03912 1.20151 0.99130 0.97775 0.91978 1.21254 0.97516 0.93019 0.98586 1.20392 1.01582 0.94438 0.94645 1.19932 1.03115 0.83537 0.95689 1.83855 1.69202 1.30126 1.24406 1.25172 0.93210 0.99005 0.79306 1.21020 1.16022 0.97563 0.92479 1.17723 0.77095 0.83742 0.85654 1.90698 1.50335 1.28171 1.79081 1.45985 1.65511 1.15667 1.07524 1.18601 0.94565 0.96726 0.75594 1.21577 1.46468 0.99055 0.92397 0.89319 1.26101 0.94599 1.00673 0.98256 1.70142 1.47557 1.31977 1.07341 0.85166 0.79379 0.77852 0.76574 1.18487 1.21245 1.18505 1.19709 1.04199 0.95927 0.92013 1.20563 0.99277 0.92764 0.98857 0.90753 0.94749 0.91336 0.87878 0.91981 0.80513 0.81318 0.72295 0.75486 0.99338 0.99340 0.92211 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.90 71.98 0.71 -1.72 16 2 C -0.08 -1.46 6.06 29.85 0.18 -1.28 16 3 C -0.09 -2.09 5.13 -19.85 -0.10 -2.20 16 4 C -0.09 -1.48 9.66 22.28 0.22 -1.26 16 5 C -0.09 -1.75 10.06 22.35 0.22 -1.52 16 6 C 0.02 0.62 7.39 22.93 0.17 0.79 16 7 O -0.18 -4.31 10.53 -3.91 -0.04 -4.35 16 8 C 0.10 2.49 11.52 67.31 0.78 3.27 16 9 C -0.27 -9.37 6.31 -18.97 -0.12 -9.49 16 10 C 0.57 25.69 7.80 86.56 0.68 26.36 16 11 O -0.60 -32.86 16.28 -4.16 -0.07 -32.93 16 12 N -0.70 -30.64 5.54 -470.41 -2.61 -33.24 16 13 C 0.27 14.99 5.43 85.63 0.46 15.46 16 14 C -0.56 -30.21 9.28 25.60 0.24 -29.97 16 15 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 18 Si 0.99 41.98 29.54 68.60 2.03 44.01 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.12 -3.96 6.29 -20.10 -0.13 -4.08 16 23 C -0.10 -3.16 9.53 22.39 0.21 -2.95 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 29 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.26 3.73 7.41 -2.91 -0.02 3.70 16 32 H 0.41 14.02 7.24 -92.71 -0.67 13.34 16 33 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.10 3.98 7.54 -2.91 -0.02 3.96 16 Total: -1.00 -78.98 317.39 4.01 -74.97 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.43 Total: 15.77 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.98 Total: -7.95 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -2.32 Total: -89.52 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.11 Total: -37.29 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -78.98 4.01 -74.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355547159.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.724 kcal (2) G-P(sol) polarization free energy of solvation -78.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds