Wall clock time and date at job start Mon Mar 30 2020 01:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47332 * 270.00114 * 3 2 1 5 5 H 1.48500 * 109.47246 * 30.00311 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00115 * 3 2 1 7 7 C 1.38799 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99770 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00262 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47044 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00182 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99850 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00354 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47795 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47540 * 179.97438 * 15 14 13 17 17 C 1.53175 * 109.53913 * 65.44548 * 16 15 14 18 18 C 1.53092 * 109.16179 * 176.85000 * 17 16 15 19 19 O 1.42910 * 109.41107 * 302.39040 * 18 17 16 20 20 C 1.42900 * 114.09727 * 61.16189 * 19 18 17 21 21 C 1.53090 * 109.41229 * 298.83586 * 20 19 18 22 22 H 0.96996 * 120.00052 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46841 * 59.99837 * 10 9 7 24 24 H 1.08997 * 109.47257 * 299.99925 * 10 9 7 25 25 H 0.97002 * 120.00038 * 359.97438 * 13 11 10 26 26 H 1.09009 * 109.46956 * 59.99811 * 14 13 11 27 27 H 1.09005 * 109.47149 * 300.00230 * 14 13 11 28 28 H 1.09005 * 109.46474 * 59.99873 * 15 14 13 29 29 H 1.09005 * 109.47030 * 300.00389 * 15 14 13 30 30 H 1.08997 * 109.61228 * 305.22843 * 16 15 14 31 31 H 1.09006 * 109.52647 * 296.75300 * 17 16 15 32 32 H 1.08998 * 109.52537 * 56.94192 * 17 16 15 33 33 H 1.08998 * 109.48147 * 182.40843 * 18 17 16 34 34 H 1.08997 * 109.48550 * 62.37144 * 18 17 16 35 35 H 1.09003 * 109.47953 * 178.86010 * 20 19 18 36 36 H 1.08995 * 109.49265 * 58.82602 * 20 19 18 37 37 H 1.09001 * 109.52724 * 297.70937 * 21 20 19 38 38 H 1.09000 * 109.52338 * 177.51272 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1295 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0007 14 6 2.3307 -7.7150 0.0008 15 6 3.5027 -8.6985 0.0009 16 6 2.9662 -10.1314 0.0016 17 6 2.2245 -10.4013 -1.3111 18 6 1.7598 -11.8598 -1.3349 19 8 2.8900 -12.7210 -1.1825 20 6 3.5948 -12.5463 0.0482 21 6 4.1333 -11.1154 0.1275 22 1 -0.4850 0.8400 0.0004 23 1 3.1246 -3.7312 0.8894 24 1 3.1246 -3.7313 -0.8905 25 1 3.8011 -6.1834 0.0004 26 1 1.7224 -7.8753 -0.8895 27 1 1.7216 -7.8750 0.8905 28 1 4.1112 -8.5383 0.8910 29 1 4.1114 -8.5384 -0.8891 30 1 2.2835 -10.2660 0.8405 31 1 1.3593 -9.7422 -1.3829 32 1 2.8936 -10.2185 -2.1519 33 1 1.2686 -12.0694 -2.2852 34 1 1.0592 -12.0316 -0.5178 35 1 4.4257 -13.2504 0.0943 36 1 2.9184 -12.7270 0.8835 37 1 4.8410 -10.9469 -0.6842 38 1 4.6332 -10.9669 1.0847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357912933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:22 Heat of formation + Delta-G solvation = -109.321342 kcal Electronic energy + Delta-G solvation = -18215.832458 eV Core-core repulsion = 15183.540496 eV Total energy + Delta-G solvation = -3032.291962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89004 -39.04909 -36.15235 -33.90272 -32.43024 -31.47745 -30.43827 -28.51305 -25.54344 -24.90284 -23.86374 -21.95472 -20.62888 -20.07922 -17.82771 -16.62920 -16.37387 -16.21785 -15.76740 -15.74296 -15.06210 -14.82814 -14.80614 -14.18995 -13.94790 -13.70043 -13.14401 -12.80591 -12.64646 -12.46223 -12.14140 -12.08102 -11.67847 -11.54172 -11.18176 -11.06549 -11.02612 -10.77380 -10.68874 -10.59332 -9.87309 -9.80856 -9.38434 -9.07250 -8.86710 -8.23754 -6.50261 -6.21868 -3.92452 3.03931 3.10648 3.22153 3.27818 3.32107 3.55049 3.71782 4.20265 4.28782 4.35354 4.49062 4.65196 4.82336 4.92012 5.02166 5.04391 5.13232 5.17608 5.21697 5.27462 5.35281 5.41824 5.51130 5.56503 5.64177 5.67578 5.76789 5.82675 5.89969 5.98310 6.05968 6.13916 6.63003 6.85926 7.59302 7.71668 8.35007 8.62098 9.23379 10.85600 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.062603 B = 0.002603 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.158490 B =10756.200774 C =11030.070849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.740 5.740 14 C 0.119 3.881 15 C -0.124 4.124 16 C -0.086 4.086 17 C -0.156 4.156 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.060 3.940 21 C -0.151 4.151 22 H 0.268 0.732 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.398 0.602 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -22.666 0.035 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.395 5.395 14 C -0.005 4.005 15 C -0.162 4.162 16 C -0.105 4.105 17 C -0.194 4.194 18 C -0.017 4.017 19 O -0.304 6.304 20 C -0.017 4.017 21 C -0.188 4.188 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.231 0.769 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.411 -23.029 -0.099 24.192 hybrid contribution 2.380 1.628 0.231 2.892 sum 9.791 -21.402 0.132 23.535 Atomic orbital electron populations 1.70021 1.05953 1.27454 1.46876 1.25001 0.95041 0.99051 0.94549 0.86159 0.79391 0.81537 0.78347 1.20266 1.20746 1.19708 1.22867 0.94904 0.91655 1.58926 0.90934 1.85395 1.04997 0.96341 1.96715 1.23531 1.06540 0.95438 1.04902 1.20317 0.86544 0.86327 0.75159 1.90698 1.15393 1.85649 1.47544 1.46016 1.09907 1.05610 1.77926 1.21326 0.96150 0.80648 1.02332 1.21823 0.97876 0.93623 1.02899 1.21126 0.97121 0.94011 0.98279 1.22343 1.01556 0.97353 0.98104 1.22607 0.87824 0.89233 1.02043 1.87932 1.43208 1.60451 1.38839 1.22572 0.96113 0.96314 0.86686 1.22246 0.98326 0.95295 1.02965 0.92182 0.89246 0.89236 0.76888 0.91531 0.91782 0.91099 0.91106 0.90619 0.90163 0.90828 0.88807 0.93116 0.88980 0.93206 0.90893 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 9.98 7.85 -10.98 -0.09 9.90 16 12 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 13 N -0.74 -9.84 5.56 -60.29 -0.33 -10.17 16 14 C 0.12 1.36 5.44 -4.05 -0.02 1.33 16 15 C -0.12 -0.97 4.80 -26.73 -0.13 -1.10 16 16 C -0.09 -0.63 2.27 -90.44 -0.21 -0.84 16 17 C -0.16 -1.21 5.10 -26.59 -0.14 -1.35 16 18 C 0.06 0.46 6.84 37.21 0.25 0.72 16 19 O -0.39 -3.58 10.77 -35.23 -0.38 -3.96 16 20 C 0.06 0.41 6.84 37.20 0.25 0.67 16 21 C -0.15 -0.98 5.42 -26.59 -0.14 -1.12 16 22 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 24 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 25 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 26 H 0.07 0.82 6.66 -51.92 -0.35 0.47 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.65 6.75 -51.93 -0.35 0.30 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -34.57 326.42 -8.08 -42.66 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.08 Total: -0.93 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 0.21 Total: -7.70 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.40 Total: -35.70 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.29 Total: -15.78 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.57 -8.08 -42.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357912933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.663 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds