Wall clock time and date at job start Mon Mar 30 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47332 * 270.00114 * 3 2 1 5 5 H 1.48500 * 109.47246 * 30.00311 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00115 * 3 2 1 7 7 C 1.38799 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99770 * 179.97438 * 7 2 1 9 9 S 1.76192 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00262 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47044 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00182 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99850 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00354 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47795 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47540 * 179.97438 * 15 14 13 17 17 C 1.53175 * 109.53913 * 65.44548 * 16 15 14 18 18 C 1.53092 * 109.16179 * 176.85000 * 17 16 15 19 19 O 1.42910 * 109.41107 * 302.39040 * 18 17 16 20 20 C 1.42900 * 114.09727 * 61.16189 * 19 18 17 21 21 C 1.53090 * 109.41229 * 298.83586 * 20 19 18 22 22 H 0.96996 * 120.00052 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46841 * 59.99837 * 10 9 7 24 24 H 1.08997 * 109.47257 * 299.99925 * 10 9 7 25 25 H 0.97002 * 120.00038 * 359.97438 * 13 11 10 26 26 H 1.09009 * 109.46956 * 59.99811 * 14 13 11 27 27 H 1.09005 * 109.47149 * 300.00230 * 14 13 11 28 28 H 1.09005 * 109.46474 * 59.99873 * 15 14 13 29 29 H 1.09005 * 109.47030 * 300.00389 * 15 14 13 30 30 H 1.08997 * 109.61228 * 305.22843 * 16 15 14 31 31 H 1.09006 * 109.52647 * 296.75300 * 17 16 15 32 32 H 1.08998 * 109.52537 * 56.94192 * 17 16 15 33 33 H 1.08998 * 109.48147 * 182.40843 * 18 17 16 34 34 H 1.08997 * 109.48550 * 62.37144 * 18 17 16 35 35 H 1.09003 * 109.47953 * 178.86010 * 20 19 18 36 36 H 1.08995 * 109.49265 * 58.82602 * 20 19 18 37 37 H 1.09001 * 109.52724 * 297.70937 * 21 20 19 38 38 H 1.09000 * 109.52338 * 177.51272 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1295 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0007 14 6 2.3307 -7.7150 0.0008 15 6 3.5027 -8.6985 0.0009 16 6 2.9662 -10.1314 0.0016 17 6 2.2245 -10.4013 -1.3111 18 6 1.7598 -11.8598 -1.3349 19 8 2.8900 -12.7210 -1.1825 20 6 3.5948 -12.5463 0.0482 21 6 4.1333 -11.1154 0.1275 22 1 -0.4850 0.8400 0.0004 23 1 3.1246 -3.7312 0.8894 24 1 3.1246 -3.7313 -0.8905 25 1 3.8011 -6.1834 0.0004 26 1 1.7224 -7.8753 -0.8895 27 1 1.7216 -7.8750 0.8905 28 1 4.1112 -8.5383 0.8910 29 1 4.1114 -8.5384 -0.8891 30 1 2.2835 -10.2660 0.8405 31 1 1.3593 -9.7422 -1.3829 32 1 2.8936 -10.2185 -2.1519 33 1 1.2686 -12.0694 -2.2852 34 1 1.0592 -12.0316 -0.5178 35 1 4.4257 -13.2504 0.0943 36 1 2.9184 -12.7270 0.8835 37 1 4.8410 -10.9469 -0.6842 38 1 4.6332 -10.9669 1.0847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357912933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:21 Heat of formation + Delta-G solvation = -133.864534 kcal Electronic energy + Delta-G solvation = -18216.896731 eV Core-core repulsion = 15183.540496 eV Total energy + Delta-G solvation = -3033.356235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76428 -40.21750 -37.05091 -34.97426 -34.58547 -32.06249 -31.65432 -29.67828 -27.67755 -25.75491 -24.46142 -22.70219 -21.84316 -20.88652 -19.81588 -17.80753 -17.39516 -17.02023 -16.88430 -16.82148 -16.76568 -15.94273 -15.79671 -15.53749 -15.00731 -14.69646 -14.53785 -14.37120 -13.60852 -13.32616 -13.19544 -13.16916 -12.89621 -12.89057 -12.60415 -12.41479 -12.20628 -11.82953 -11.73587 -11.31066 -11.19359 -11.14566 -10.96194 -10.43183 -10.28148 -10.09890 -8.67561 -8.35011 -6.13366 1.26999 1.42634 1.47277 1.57731 1.60740 2.26136 2.30817 2.99114 3.00125 3.31864 3.66028 3.74436 3.85504 4.01606 4.09209 4.20899 4.25406 4.30892 4.38018 4.49983 4.51109 4.56310 4.62597 4.81004 4.82811 4.88683 4.93718 5.04933 5.12554 5.18130 5.25766 5.41493 5.45110 5.46713 6.19553 6.29255 6.51381 7.06204 7.24724 8.74297 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.062603 B = 0.002603 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.158490 B =10756.200774 C =11030.070849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.568 6.568 13 N -0.713 5.713 14 C 0.118 3.882 15 C -0.111 4.111 16 C -0.085 4.085 17 C -0.155 4.155 18 C 0.057 3.943 19 O -0.407 6.407 20 C 0.053 3.947 21 C -0.145 4.145 22 H 0.271 0.729 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.417 0.583 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.262 -23.021 0.353 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.367 5.367 14 C -0.006 4.006 15 C -0.149 4.149 16 C -0.105 4.105 17 C -0.193 4.193 18 C -0.019 4.019 19 O -0.326 6.326 20 C -0.023 4.023 21 C -0.182 4.182 22 H 0.080 0.920 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.254 0.746 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.192 -23.425 0.220 25.547 hybrid contribution 1.567 1.584 0.132 2.232 sum 11.760 -21.841 0.352 24.808 Atomic orbital electron populations 1.70187 1.08000 1.28627 1.48021 1.26154 0.95988 1.03394 0.93743 0.84933 0.78188 0.75926 0.78801 1.19298 1.20315 1.18141 1.23203 0.95355 0.91946 1.58851 0.89855 1.85588 1.10725 0.99346 1.97058 1.23375 1.03496 0.94340 1.06848 1.20104 0.86270 0.86804 0.75160 1.90687 1.17512 1.86173 1.50289 1.45778 1.10321 1.05251 1.75370 1.21480 0.97641 0.79963 1.01478 1.21743 0.96405 0.92614 1.04115 1.21123 0.97543 0.93923 0.97863 1.22315 1.01282 0.97270 0.98390 1.22663 0.87709 0.89032 1.02530 1.87903 1.43701 1.60932 1.40063 1.22753 0.96511 0.97002 0.86047 1.22201 0.97741 0.94543 1.03745 0.91987 0.87139 0.87160 0.74624 0.92510 0.92710 0.89500 0.90190 0.90650 0.90899 0.91206 0.88416 0.92688 0.87767 0.92658 0.91074 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.52 29.55 68.60 2.03 45.54 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.55 -31.18 9.50 67.95 0.65 -30.53 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.53 19.56 7.85 87.66 0.69 20.25 16 12 O -0.57 -26.56 15.86 -3.03 -0.05 -26.60 16 13 N -0.71 -17.46 5.56 -463.06 -2.57 -20.04 16 14 C 0.12 2.50 5.44 86.38 0.47 2.97 16 15 C -0.11 -1.43 4.80 30.59 0.15 -1.29 16 16 C -0.09 -1.08 2.27 -10.68 -0.02 -1.10 16 17 C -0.15 -2.26 5.10 30.68 0.16 -2.10 16 18 C 0.06 0.84 6.84 72.01 0.49 1.33 16 19 O -0.41 -7.09 10.77 -148.98 -1.60 -8.69 16 20 C 0.05 0.64 6.84 72.01 0.49 1.13 16 21 C -0.14 -1.51 5.42 30.68 0.17 -1.34 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 24 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 25 H 0.42 7.12 8.47 -92.71 -0.79 6.34 16 26 H 0.06 1.36 6.66 -2.38 -0.02 1.34 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.16 6.75 -2.38 -0.02 1.14 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.64 326.42 1.32 -75.32 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.26 Total: 14.37 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 4.14 Total: -14.21 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -2.29 Total: -75.95 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.65 Total: -35.29 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -76.64 1.32 -75.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357912933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.547 kcal (2) G-P(sol) polarization free energy of solvation -76.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds