Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33993 * 126.90571 * 2 1 4 4 O 1.34437 * 110.15783 * 180.02562 * 3 2 1 5 5 C 1.34922 * 110.88917 * 359.97438 * 4 3 2 6 6 C 1.38948 * 133.31534 * 180.29817 * 5 4 3 7 7 C 1.37732 * 120.05537 * 180.21427 * 6 5 4 8 8 C 1.39331 * 120.62031 * 359.45792 * 7 6 5 9 9 N 1.40105 * 119.93405 * 180.29679 * 8 7 6 10 10 C 1.34783 * 120.00083 * 144.89740 * 9 8 7 11 11 O 1.21287 * 119.99873 * 4.60961 * 10 9 8 12 12 C 1.50701 * 119.99815 * 184.61244 * 10 9 8 13 13 C 1.53010 * 109.46716 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.46903 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00636 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00042 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99498 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00034 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47186 * 59.99971 * 18 16 14 20 20 H 1.48503 * 109.46840 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47149 * 299.99629 * 18 16 14 22 22 C 1.38314 * 120.12446 * 0.26942 * 8 7 6 23 23 C 1.39397 * 119.54414 * 0.02562 * 22 8 7 24 24 H 1.09001 * 109.46952 * 270.00226 * 1 2 3 25 25 H 1.09000 * 109.46945 * 29.99444 * 1 2 3 26 26 H 1.08992 * 109.47725 * 150.00206 * 1 2 3 27 27 H 1.07999 * 124.92208 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.97593 * 359.94812 * 6 5 4 29 29 H 1.07993 * 119.68979 * 179.72602 * 7 6 5 30 30 H 0.97000 * 120.00555 * 324.89302 * 9 8 7 31 31 H 1.08999 * 109.47297 * 299.99045 * 12 10 9 32 32 H 1.08994 * 109.47340 * 59.99774 * 12 10 9 33 33 H 1.08999 * 109.46617 * 299.99656 * 13 12 10 34 34 H 1.08999 * 109.47247 * 59.99424 * 13 12 10 35 35 H 0.97000 * 119.99769 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.22881 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0714 0.0000 4 8 3.5989 0.6840 -0.0006 5 6 3.6964 -0.6616 -0.0004 6 6 4.7735 -1.5394 0.0045 7 6 4.5553 -2.8993 -0.0013 8 6 3.2589 -3.4100 -0.0007 9 7 3.0535 -4.7959 -0.0003 10 6 2.0103 -5.3224 0.6714 11 8 1.2023 -4.5924 1.2055 12 6 1.8480 -6.8181 0.7588 13 6 0.5939 -7.1483 1.5708 14 6 0.4319 -8.6439 1.6587 15 1 1.1511 -9.2940 1.1828 16 6 -0.6347 -9.1825 2.3469 17 7 -1.5102 -8.3909 2.9269 18 14 -0.8359 -11.0365 2.4553 19 1 0.3542 -11.6256 3.1199 20 1 -2.0523 -11.3570 3.2445 21 1 -0.9694 -11.6007 1.0882 22 6 2.1746 -2.5514 0.0001 23 6 2.3885 -1.1739 -0.0002 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5137 27 1 1.9748 2.0976 0.0004 28 1 5.7828 -1.1549 0.0085 29 1 5.3968 -3.5761 -0.0019 30 1 3.6620 -5.3766 -0.4835 31 1 1.7509 -7.2323 -0.2448 32 1 2.7211 -7.2504 1.2475 33 1 0.6914 -6.7341 2.5743 34 1 -0.2794 -6.7159 1.0825 35 1 -2.2607 -8.7698 3.4107 36 1 1.1690 -2.9454 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360710613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -42.422703 kcal Electronic energy + Delta-G solvation = -19728.984041 eV Core-core repulsion = 16564.149070 eV Total energy + Delta-G solvation = -3164.834971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.39549 -41.31722 -38.71989 -35.62665 -35.50618 -34.84914 -33.08190 -31.17337 -30.18979 -28.13196 -27.65984 -24.92046 -23.80426 -22.82304 -21.38564 -21.03163 -19.05967 -18.82326 -18.08944 -17.37846 -17.24484 -17.07615 -16.51663 -16.47307 -15.47763 -15.18426 -14.86098 -14.52064 -14.25680 -14.15550 -14.09285 -13.84355 -13.52025 -13.39310 -13.27313 -12.90894 -12.77611 -12.52009 -12.07122 -11.92155 -11.65507 -11.34111 -11.22949 -10.89836 -10.69797 -10.55995 -9.18714 -8.95560 -8.18364 -6.32580 -0.07364 0.19704 1.36184 1.42483 1.46885 1.54535 1.59766 1.85258 2.08348 2.43731 2.68334 3.14870 3.46518 3.64822 3.93347 3.96102 4.15972 4.29299 4.35418 4.44496 4.49138 4.53704 4.70307 4.74406 4.82322 4.94627 5.05156 5.13860 5.24814 5.27849 5.29048 5.48911 5.52889 5.61086 5.73184 5.84402 6.15901 6.17394 6.46886 6.85619 7.20560 7.37838 8.94077 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032881 B = 0.003414 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.345786 B = 8199.647659 C = 8923.159471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.211 4.211 3 C 0.019 3.981 4 O -0.199 6.199 5 C 0.016 3.984 6 C -0.082 4.082 7 C -0.107 4.107 8 C 0.120 3.880 9 N -0.659 5.659 10 C 0.509 3.491 11 O -0.567 6.567 12 C -0.115 4.115 13 C 0.041 3.959 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.262 1.262 22 C -0.108 4.108 23 C -0.137 4.137 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.253 0.747 28 H 0.172 0.828 29 H 0.179 0.821 30 H 0.431 0.569 31 H 0.111 0.889 32 H 0.112 0.888 33 H -0.018 1.018 34 H -0.017 1.017 35 H 0.262 0.738 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.312 15.942 -9.685 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.213 4.213 3 C -0.045 4.045 4 O -0.100 6.100 5 C -0.031 4.031 6 C -0.100 4.100 7 C -0.126 4.126 8 C 0.025 3.975 9 N -0.307 5.307 10 C 0.300 3.700 11 O -0.444 6.444 12 C -0.154 4.154 13 C 0.003 3.997 14 C -0.582 4.582 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.215 1.215 21 H -0.186 1.186 22 C -0.129 4.129 23 C -0.139 4.139 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.068 0.932 27 H 0.268 0.732 28 H 0.189 0.811 29 H 0.196 0.804 30 H 0.271 0.729 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.000 1.000 34 H 0.001 0.999 35 H 0.071 0.929 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.812 16.543 -9.196 23.430 hybrid contribution -0.863 -1.134 0.250 1.447 sum 12.949 15.409 -8.945 22.025 Atomic orbital electron populations 1.20161 0.87819 1.03279 1.02429 1.21519 0.97836 0.91217 1.10678 1.24498 0.78632 1.00773 1.00567 1.83997 1.29050 1.20328 1.76637 1.19948 0.95487 0.81954 1.05705 1.20104 0.97620 0.90109 1.02211 1.21045 0.95125 0.94963 1.01515 1.17832 0.93915 0.83457 1.02257 1.43467 1.30193 1.05211 1.51788 1.21683 0.79774 0.92455 0.76132 1.90675 1.43450 1.63146 1.47161 1.21663 1.01603 0.88300 1.03883 1.18703 0.91979 0.95396 0.93598 1.21685 1.10279 0.92518 1.33685 0.90349 1.26147 0.95478 1.03912 0.94938 1.70176 1.14465 1.37469 1.35677 0.85368 0.77663 0.78454 0.78731 1.18639 1.21485 1.18637 1.20555 0.99323 0.91312 1.01725 1.20041 0.94330 0.93895 1.05606 0.91565 0.88250 0.93234 0.73152 0.81106 0.80371 0.72862 0.87047 0.86977 0.99955 0.99898 0.92889 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 10.43 71.23 0.74 -1.05 16 2 C -0.21 -5.44 6.35 -18.59 -0.12 -5.56 16 3 C 0.02 0.38 11.89 66.85 0.79 1.17 16 4 O -0.20 -4.65 10.59 -9.96 -0.11 -4.76 16 5 C 0.02 0.43 7.41 22.98 0.17 0.60 16 6 C -0.08 -1.67 10.05 22.32 0.22 -1.45 16 7 C -0.11 -2.20 9.93 22.41 0.22 -1.97 16 8 C 0.12 3.47 6.30 38.10 0.24 3.71 16 9 N -0.66 -18.20 5.34 -303.42 -1.62 -19.82 16 10 C 0.51 19.63 7.67 87.66 0.67 20.30 16 11 O -0.57 -27.95 13.42 -3.05 -0.04 -27.99 16 12 C -0.11 -4.45 5.64 29.85 0.17 -4.28 16 13 C 0.04 2.26 4.26 29.85 0.13 2.38 16 14 C -0.54 -30.61 9.11 25.60 0.23 -30.37 16 15 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 16 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 17 N -0.94 -59.54 13.29 21.45 0.28 -59.26 16 18 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 22 C -0.11 -3.79 8.74 22.57 0.20 -3.59 16 23 C -0.14 -4.28 6.38 -20.22 -0.13 -4.41 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.25 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.43 7.75 8.82 -92.71 -0.82 6.93 16 31 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 33 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 34 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 35 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.11 4.56 6.22 -2.91 -0.02 4.55 16 Total: -1.00 -82.30 315.29 4.84 -77.46 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.29 Total: 12.79 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 4.01 Total: -24.48 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.34 Total: -79.08 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.15 Total: -32.74 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -82.30 4.84 -77.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360710613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.042 kcal (2) G-P(sol) polarization free energy of solvation -82.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds