Wall clock time and date at job start Mon Mar 30 2020 00:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99604 * 2 1 4 4 H 1.48496 * 109.47427 * 270.00099 * 3 2 1 5 5 H 1.48503 * 109.47110 * 30.00130 * 3 2 1 6 6 H 1.48503 * 109.47020 * 149.99836 * 3 2 1 7 7 C 1.38795 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99514 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00249 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00082 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47102 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00098 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00166 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00156 * 179.97438 * 13 11 10 15 15 H 1.08991 * 109.47169 * 325.00089 * 14 13 11 16 16 C 1.52999 * 109.47084 * 84.99768 * 14 13 11 17 17 O 1.42903 * 109.47256 * 65.00345 * 16 14 13 18 18 C 1.53002 * 109.46869 * 204.99778 * 14 13 11 19 19 C 1.54266 * 110.03004 * 177.16648 * 18 14 13 20 20 C 1.54888 * 104.19728 * 217.10725 * 19 18 14 21 21 C 1.54884 * 102.74982 * 37.94092 * 20 19 18 22 22 C 1.53873 * 110.03298 * 60.00166 * 18 14 13 23 23 H 0.96999 * 120.00634 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46978 * 59.99767 * 10 9 7 25 25 H 1.09004 * 109.46685 * 299.99906 * 10 9 7 26 26 H 0.97004 * 119.99534 * 359.97438 * 13 11 10 27 27 H 1.08997 * 109.47286 * 304.99906 * 16 14 13 28 28 H 1.09008 * 109.47201 * 184.99686 * 16 14 13 29 29 H 0.96700 * 114.00311 * 180.02562 * 17 16 14 30 30 H 1.08997 * 110.02071 * 298.60530 * 18 14 13 31 31 H 1.09003 * 110.48778 * 335.78720 * 19 18 14 32 32 H 1.08997 * 110.48780 * 98.42703 * 19 18 14 33 33 H 1.09004 * 110.75760 * 279.62716 * 20 19 18 34 34 H 1.08999 * 110.91739 * 156.32869 * 20 19 18 35 35 H 1.08993 * 110.49189 * 203.38064 * 21 20 19 36 36 H 1.09008 * 110.59825 * 80.78981 * 21 20 19 37 37 H 1.08994 * 110.03503 * 238.56750 * 22 18 14 38 38 H 1.09004 * 110.03059 * 359.97438 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3441 -2.2960 -0.0014 13 7 6.0459 -4.4944 -0.0041 14 6 7.4909 -4.7354 -0.0048 15 1 7.9876 -3.9643 -0.5935 16 6 8.0151 -4.6967 1.4321 17 8 7.4515 -5.7802 2.1741 18 6 7.7787 -6.1083 -0.6159 19 6 9.3012 -6.3458 -0.6881 20 6 9.5038 -7.1092 -2.0205 21 6 8.4798 -6.4294 -2.9630 22 6 7.2564 -6.1614 -2.0623 23 1 -0.4851 0.8400 -0.0004 24 1 3.6434 -3.4308 -0.8926 25 1 3.6441 -3.4320 0.8874 26 1 5.4293 -5.2433 -0.0047 27 1 7.7322 -3.7522 1.8968 28 1 9.1013 -4.7874 1.4252 29 1 7.7403 -5.8177 3.0962 30 1 7.3062 -6.8887 -0.0194 31 1 9.8351 -5.3957 -0.7078 32 1 9.6329 -6.9534 0.1538 33 1 9.2730 -8.1675 -1.8984 34 1 10.5192 -6.9774 -2.3940 35 1 8.2120 -7.0978 -3.7812 36 1 8.8796 -5.4928 -3.3520 37 1 6.5311 -6.9680 -2.1680 38 1 6.7975 -5.2092 -2.3287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395060473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:55 Heat of formation + Delta-G solvation = -110.344969 kcal Electronic energy + Delta-G solvation = -19060.744027 eV Core-core repulsion = 16028.407677 eV Total energy + Delta-G solvation = -3032.336350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97856 -38.25111 -36.64223 -34.22998 -32.42605 -31.03868 -29.06841 -28.55267 -26.95260 -25.59425 -22.66079 -20.90850 -20.17085 -19.87447 -17.81945 -17.51466 -16.48094 -16.27055 -15.88101 -15.25113 -14.95475 -14.84261 -14.28111 -13.91786 -13.68804 -13.51952 -13.26083 -12.78881 -12.60751 -12.15267 -11.95315 -11.44149 -11.29259 -11.25651 -11.24234 -11.00379 -10.95038 -10.84597 -10.58428 -10.55646 -10.10692 -9.83981 -9.45382 -8.99936 -8.89570 -8.48384 -6.89992 -6.27608 -3.99090 2.79144 3.00114 3.32070 3.35465 3.51157 3.67980 4.16843 4.34029 4.36739 4.41152 4.50140 4.76840 4.91542 5.06768 5.11479 5.20702 5.24754 5.29138 5.35522 5.43536 5.47298 5.54044 5.63868 5.65958 5.72775 5.80498 5.83060 5.92414 6.04634 6.06123 6.12344 6.27215 6.63271 7.46877 7.70340 7.95559 8.43357 8.53671 9.18602 10.81719 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.003868 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.297521 B = 7236.829339 C = 7500.140065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.525 6.525 13 N -0.723 5.723 14 C 0.158 3.842 15 H 0.098 0.902 16 C 0.062 3.938 17 O -0.568 6.568 18 C -0.094 4.094 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.125 4.125 23 H 0.271 0.729 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.401 0.599 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.376 0.624 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.455 -15.446 -0.584 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.160 1.160 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.318 3.682 12 O -0.400 6.400 13 N -0.376 5.376 14 C 0.052 3.948 15 H 0.116 0.884 16 C -0.017 4.017 17 O -0.373 6.373 18 C -0.113 4.113 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.163 4.163 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.235 0.765 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.222 0.778 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.268 -13.887 -1.163 23.779 hybrid contribution -0.885 -0.508 0.571 1.170 sum 18.383 -14.394 -0.592 23.356 Atomic orbital electron populations 1.69939 1.05920 1.27744 1.48173 1.24713 0.94444 0.98952 0.93205 0.86731 0.81880 0.83283 0.79917 1.19215 1.19964 1.15950 1.22328 0.88324 0.97537 1.58659 0.89403 1.84747 1.09226 1.00226 1.97427 1.23276 0.94160 1.04198 1.05795 1.20289 0.90561 0.82390 0.74994 1.90682 1.58760 1.42275 1.48307 1.45932 1.07040 1.07923 1.76714 1.21107 0.82035 0.97540 0.94094 0.88409 1.22668 0.96332 0.89785 0.92914 1.86447 1.73148 1.50889 1.26780 1.21954 0.96543 0.96528 0.96262 1.22368 0.94863 1.00387 0.97651 1.22487 0.99008 0.99402 0.95300 1.22362 0.95708 1.00476 0.97740 1.22252 0.97795 1.02312 0.93894 0.91957 0.88557 0.88494 0.76455 0.92897 0.93069 0.77765 0.89556 0.91481 0.91466 0.91589 0.91697 0.91838 0.91631 0.91736 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.80 13.97 55.49 0.78 -26.02 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.93 27.74 -169.99 -4.71 17.22 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 11 C 0.53 9.54 7.81 -10.99 -0.09 9.45 16 12 O -0.53 -11.22 15.52 5.56 0.09 -11.14 16 13 N -0.72 -9.67 4.38 -53.81 -0.24 -9.91 16 14 C 0.16 1.84 1.61 -67.93 -0.11 1.73 16 15 H 0.10 1.29 7.55 -51.93 -0.39 0.90 16 16 C 0.06 0.67 6.56 37.16 0.24 0.92 16 17 O -0.57 -5.70 12.72 -35.23 -0.45 -6.15 16 18 C -0.09 -0.88 2.37 -89.50 -0.21 -1.09 16 19 C -0.11 -0.92 5.41 -25.07 -0.14 -1.05 16 20 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 21 C -0.13 -1.04 6.83 -25.07 -0.17 -1.21 16 22 C -0.12 -1.17 6.19 -25.61 -0.16 -1.33 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 25 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 26 H 0.40 4.62 8.60 -40.82 -0.35 4.27 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.45 7.44 -51.92 -0.39 0.07 16 29 H 0.38 2.32 9.12 45.56 0.42 2.74 16 30 H 0.09 0.85 7.54 -51.93 -0.39 0.46 16 31 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.78 7.37 -51.93 -0.38 0.39 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -33.85 324.20 -7.28 -41.13 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.27 Total: 3.66 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.36 Total: -8.03 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.54 Total: -35.93 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.36 Total: -17.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.85 -7.28 -41.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395060473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.212 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds