Wall clock time and date at job start Mon Mar 30 2020 00:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99604 * 2 1 4 4 H 1.48496 * 109.47427 * 270.00099 * 3 2 1 5 5 H 1.48503 * 109.47110 * 30.00130 * 3 2 1 6 6 H 1.48503 * 109.47020 * 149.99836 * 3 2 1 7 7 C 1.38795 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99514 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00249 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00082 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47102 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00098 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00166 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00156 * 179.97438 * 13 11 10 15 15 H 1.08991 * 109.47169 * 325.00089 * 14 13 11 16 16 C 1.52999 * 109.47084 * 84.99768 * 14 13 11 17 17 O 1.42903 * 109.47256 * 65.00345 * 16 14 13 18 18 C 1.53002 * 109.46869 * 204.99778 * 14 13 11 19 19 C 1.54266 * 110.03004 * 177.16648 * 18 14 13 20 20 C 1.54888 * 104.19728 * 217.10725 * 19 18 14 21 21 C 1.54884 * 102.74982 * 37.94092 * 20 19 18 22 22 C 1.53873 * 110.03298 * 60.00166 * 18 14 13 23 23 H 0.96999 * 120.00634 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46978 * 59.99767 * 10 9 7 25 25 H 1.09004 * 109.46685 * 299.99906 * 10 9 7 26 26 H 0.97004 * 119.99534 * 359.97438 * 13 11 10 27 27 H 1.08997 * 109.47286 * 304.99906 * 16 14 13 28 28 H 1.09008 * 109.47201 * 184.99686 * 16 14 13 29 29 H 0.96700 * 114.00311 * 180.02562 * 17 16 14 30 30 H 1.08997 * 110.02071 * 298.60530 * 18 14 13 31 31 H 1.09003 * 110.48778 * 335.78720 * 19 18 14 32 32 H 1.08997 * 110.48780 * 98.42703 * 19 18 14 33 33 H 1.09004 * 110.75760 * 279.62716 * 20 19 18 34 34 H 1.08999 * 110.91739 * 156.32869 * 20 19 18 35 35 H 1.08993 * 110.49189 * 203.38064 * 21 20 19 36 36 H 1.09008 * 110.59825 * 80.78981 * 21 20 19 37 37 H 1.08994 * 110.03503 * 238.56750 * 22 18 14 38 38 H 1.09004 * 110.03059 * 359.97438 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2019 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3441 -2.2960 -0.0014 13 7 6.0459 -4.4944 -0.0041 14 6 7.4909 -4.7354 -0.0048 15 1 7.9876 -3.9643 -0.5935 16 6 8.0151 -4.6967 1.4321 17 8 7.4515 -5.7802 2.1741 18 6 7.7787 -6.1083 -0.6159 19 6 9.3012 -6.3458 -0.6881 20 6 9.5038 -7.1092 -2.0205 21 6 8.4798 -6.4294 -2.9630 22 6 7.2564 -6.1614 -2.0623 23 1 -0.4851 0.8400 -0.0004 24 1 3.6434 -3.4308 -0.8926 25 1 3.6441 -3.4320 0.8874 26 1 5.4293 -5.2433 -0.0047 27 1 7.7322 -3.7522 1.8968 28 1 9.1013 -4.7874 1.4252 29 1 7.7403 -5.8177 3.0962 30 1 7.3062 -6.8887 -0.0194 31 1 9.8351 -5.3957 -0.7078 32 1 9.6329 -6.9534 0.1538 33 1 9.2730 -8.1675 -1.8984 34 1 10.5192 -6.9774 -2.3940 35 1 8.2120 -7.0978 -3.7812 36 1 8.8796 -5.4928 -3.3520 37 1 6.5311 -6.9680 -2.1680 38 1 6.7975 -5.2092 -2.3287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395060473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:55 Heat of formation + Delta-G solvation = -135.482583 kcal Electronic energy + Delta-G solvation = -19061.834076 eV Core-core repulsion = 16028.407677 eV Total energy + Delta-G solvation = -3033.426399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12626 -39.31607 -37.42876 -35.37583 -34.68243 -32.22327 -30.13321 -29.46491 -27.91618 -27.72402 -23.64302 -21.76807 -21.24562 -20.79053 -19.79487 -18.39231 -17.81890 -17.43208 -17.10249 -16.72119 -16.44944 -15.86974 -15.76047 -15.12310 -14.93109 -14.78165 -14.47783 -14.18139 -13.79530 -13.36446 -13.26152 -13.01187 -12.96022 -12.68495 -12.14178 -11.95210 -11.87550 -11.85699 -11.77601 -11.45723 -11.35394 -11.18022 -11.05394 -10.80407 -10.55508 -10.09452 -9.00718 -8.52473 -6.23554 0.97791 1.30881 1.45898 1.55047 1.55611 2.21316 2.25870 2.70529 2.85681 3.38263 3.56499 3.71497 3.79782 3.89641 4.14269 4.22182 4.27851 4.40896 4.44924 4.57499 4.59146 4.65589 4.75020 4.81956 4.88015 4.93289 5.06865 5.10699 5.28154 5.30179 5.45976 5.51226 5.56925 5.69718 6.10296 6.47444 6.86607 6.92467 7.18266 8.60158 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.003868 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.297521 B = 7236.829339 C = 7500.140065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.046 3.954 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.531 4.531 8 H 0.060 0.940 9 S -0.171 6.171 10 C -0.112 4.112 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.701 5.701 14 C 0.153 3.847 15 H 0.082 0.918 16 C 0.069 3.931 17 O -0.575 6.575 18 C -0.084 4.084 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.126 4.126 23 H 0.277 0.723 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.413 0.587 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.394 0.606 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.263 -16.674 -0.466 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.679 4.679 8 H 0.079 0.921 9 S 0.055 5.945 10 C -0.263 4.263 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.353 5.353 14 C 0.048 3.952 15 H 0.100 0.900 16 C -0.010 4.010 17 O -0.383 6.383 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.164 4.164 22 C -0.164 4.164 23 H 0.087 0.913 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.249 0.751 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.243 0.757 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 21.079 -15.171 -1.030 25.991 hybrid contribution -1.431 -0.309 0.540 1.560 sum 19.648 -15.480 -0.490 25.018 Atomic orbital electron populations 1.70016 1.07346 1.29077 1.49123 1.25577 0.95281 1.02302 0.92815 0.85852 0.80657 0.79485 0.80275 1.18607 1.18236 1.16056 1.22472 0.90342 0.96687 1.58355 0.92132 1.84637 1.06319 1.05953 1.97575 1.23269 0.96119 0.99721 1.07176 1.19920 0.89311 0.83413 0.75126 1.90672 1.59173 1.43691 1.50606 1.45765 1.08424 1.06592 1.74545 1.21302 0.80254 0.98544 0.95065 0.89966 1.22505 0.97686 0.88886 0.91935 1.86397 1.73472 1.50158 1.28281 1.21892 0.97808 0.94700 0.95874 1.22378 0.93452 1.00717 0.98532 1.22479 0.99218 0.99573 0.94467 1.22374 0.95491 1.00519 0.98032 1.22260 0.98462 1.01468 0.94229 0.91322 0.87078 0.87244 0.75074 0.95552 0.90577 0.75652 0.89391 0.91557 0.90360 0.90802 0.90706 0.91089 0.92312 0.91001 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.40 13.97 21.65 0.30 -56.09 16 2 C 0.05 2.70 5.50 84.86 0.47 3.17 16 3 Si 0.92 45.31 27.74 68.60 1.90 47.21 16 4 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 7 C -0.53 -31.37 10.04 67.95 0.68 -30.68 16 8 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 9 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 10 C -0.11 -4.36 6.16 71.23 0.44 -3.92 16 11 C 0.54 18.93 7.81 87.65 0.68 19.62 16 12 O -0.56 -24.04 15.52 -3.02 -0.05 -24.09 16 13 N -0.70 -17.91 4.38 -442.55 -1.94 -19.84 16 14 C 0.15 3.36 1.61 44.99 0.07 3.43 16 15 H 0.08 2.12 7.55 -2.39 -0.02 2.10 16 16 C 0.07 1.37 6.56 71.98 0.47 1.85 16 17 O -0.58 -10.14 12.72 -148.98 -1.89 -12.03 16 18 C -0.08 -1.39 2.37 -10.07 -0.02 -1.41 16 19 C -0.11 -1.50 5.41 31.67 0.17 -1.33 16 20 C -0.12 -1.45 6.91 31.88 0.22 -1.23 16 21 C -0.13 -1.87 6.83 31.67 0.22 -1.65 16 22 C -0.13 -2.17 6.19 31.32 0.19 -1.98 16 23 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 25 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 26 H 0.41 8.75 8.60 -92.71 -0.80 7.95 16 27 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 1.15 7.44 -2.38 -0.02 1.14 16 29 H 0.39 3.85 9.12 -74.06 -0.68 3.17 16 30 H 0.09 1.48 7.54 -2.39 -0.02 1.47 16 31 H 0.07 0.91 7.75 -2.39 -0.02 0.89 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.06 7.37 -2.38 -0.02 1.04 16 Total: -1.00 -72.94 324.20 0.42 -72.51 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -0.45 Total: 16.30 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 3.59 Total: -14.14 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.64 Total: -75.94 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.94 Total: -36.12 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -72.94 0.42 -72.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395060473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.971 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds