Wall clock time and date at job start Mon Mar 30 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00194 * 2 1 4 4 H 1.48498 * 109.47641 * 270.00199 * 3 2 1 5 5 H 1.48499 * 109.47118 * 30.00579 * 3 2 1 6 6 H 1.48498 * 109.47306 * 150.00235 * 3 2 1 7 7 C 1.37877 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00389 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.52111 * 59.90991 * 9 7 2 11 11 C 1.53040 * 109.49486 * 299.83809 * 9 7 2 12 12 C 1.53034 * 109.53977 * 178.68171 * 11 9 7 13 13 C 1.52764 * 109.38604 * 61.23673 * 12 11 9 14 14 N 1.46931 * 109.00467 * 305.59245 * 13 12 11 15 15 S 1.65600 * 120.62621 * 233.57868 * 14 13 12 16 16 O 1.42103 * 104.27604 * 153.65070 * 15 14 13 17 17 O 1.42099 * 104.27972 * 25.79368 * 15 14 13 18 18 C 1.81394 * 104.45250 * 269.72254 * 15 14 13 19 19 C 1.53002 * 109.47345 * 180.02562 * 18 15 14 20 20 C 1.53002 * 117.49773 * 185.00120 * 19 18 15 21 21 C 1.53000 * 60.02940 * 252.51785 * 20 19 18 22 22 C 1.46917 * 118.74011 * 53.30593 * 14 13 12 23 23 H 0.96996 * 119.99374 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46137 * 298.70128 * 11 9 7 25 25 H 1.09001 * 109.46405 * 58.67223 * 11 9 7 26 26 H 1.08998 * 109.50442 * 181.31780 * 12 11 9 27 27 H 1.09001 * 109.49987 * 301.38004 * 12 11 9 28 28 H 1.08993 * 109.51057 * 185.71178 * 13 12 11 29 29 H 1.08999 * 109.43006 * 65.42277 * 13 12 11 30 30 H 1.09003 * 109.47284 * 60.00016 * 18 15 14 31 31 H 1.09003 * 109.47171 * 300.00352 * 18 15 14 32 32 H 1.09000 * 115.55766 * 330.68436 * 19 18 15 33 33 H 1.09002 * 117.49918 * 145.01819 * 20 19 18 34 34 H 1.09002 * 117.49754 * 0.02562 * 20 19 18 35 35 H 1.09008 * 117.49673 * 107.47884 * 21 20 19 36 36 H 1.08999 * 117.49942 * 252.47315 * 21 20 19 37 37 H 1.09005 * 109.59071 * 66.43177 * 22 14 13 38 38 H 1.09003 * 109.58761 * 186.71125 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 1 3.8762 -0.6793 0.8878 11 6 4.0219 -0.4762 -1.2526 12 6 5.5518 -0.4469 -1.2378 13 6 6.0865 -1.8778 -1.2491 14 7 5.4860 -2.6218 -0.1334 15 16 6.4406 -3.4210 0.9586 16 8 5.6584 -3.4613 2.1443 17 8 7.6774 -2.7223 0.9203 18 6 6.6282 -5.0856 0.2629 19 6 7.5007 -5.9316 1.1924 20 6 7.8758 -7.3386 0.7227 21 6 6.8554 -7.1551 1.8478 22 6 4.0228 -2.6382 -0.0016 23 1 -0.4849 0.8401 0.0004 24 1 3.6774 -1.0056 -2.1409 25 1 3.6395 0.5444 -1.2671 26 1 5.9142 0.0851 -2.1175 27 1 5.8974 0.0613 -0.3375 28 1 7.1705 -1.8623 -1.1364 29 1 5.8218 -2.3564 -2.1919 30 1 7.0999 -5.0187 -0.7175 31 1 5.6473 -5.5504 0.1631 32 1 8.2407 -5.3809 1.7731 33 1 8.8626 -7.7135 0.9944 34 1 7.5014 -7.6613 -0.2488 35 1 5.8094 -7.3570 1.6165 36 1 7.1707 -7.4098 2.8597 37 1 3.5863 -3.1801 -0.8406 38 1 3.7455 -3.1265 0.9327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397578429.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:37 Heat of formation + Delta-G solvation = -72.552824 kcal Electronic energy + Delta-G solvation = -19997.726703 eV Core-core repulsion = 16967.029143 eV Total energy + Delta-G solvation = -3030.697560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.49573 -38.46351 -38.23427 -37.00062 -35.17520 -33.20898 -32.17940 -30.25356 -27.03258 -25.53701 -23.29452 -23.16915 -22.05110 -21.20483 -19.76779 -18.98370 -18.45459 -17.83120 -17.11039 -16.71624 -15.98678 -15.60750 -15.49694 -15.25647 -14.88823 -14.62528 -14.37681 -14.25401 -14.20413 -13.30062 -13.23022 -13.18716 -12.86743 -12.81440 -12.66455 -12.38941 -12.35418 -12.31628 -12.01210 -11.80855 -11.50823 -11.22939 -11.15194 -10.99475 -10.90132 -10.65640 -9.76958 -8.30070 -6.32752 -0.76190 1.27136 1.35610 1.44914 1.66459 2.31974 2.71108 2.88579 3.05791 3.17867 3.43657 3.78799 3.83304 3.98516 4.07476 4.10704 4.20591 4.34047 4.41315 4.45685 4.51938 4.66930 4.76592 4.78201 4.90276 4.99896 5.00613 5.08124 5.10214 5.19446 5.23728 5.27148 5.45516 5.59313 5.70704 5.81882 6.29336 6.74018 7.32895 8.86135 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031960 B = 0.005365 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.889340 B = 5217.739536 C = 5605.208704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.259 1.259 5 H -0.302 1.302 6 H -0.261 1.261 7 C -0.514 4.514 8 H 0.046 0.954 9 C -0.001 4.001 10 H 0.007 0.993 11 C -0.119 4.119 12 C -0.136 4.136 13 C 0.118 3.882 14 N -1.003 6.003 15 S 2.603 3.397 16 O -0.996 6.996 17 O -0.987 6.987 18 C -0.568 4.568 19 C -0.186 4.186 20 C -0.144 4.144 21 C -0.183 4.183 22 C 0.143 3.857 23 H 0.265 0.735 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.165 0.835 31 H 0.150 0.850 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.868 -12.551 -4.220 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.185 1.185 5 H -0.230 1.230 6 H -0.186 1.186 7 C -0.553 4.553 8 H 0.064 0.936 9 C -0.022 4.022 10 H 0.025 0.975 11 C -0.156 4.156 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.841 5.841 15 S 2.703 3.297 16 O -0.987 6.987 17 O -0.978 6.978 18 C -0.701 4.701 19 C -0.206 4.206 20 C -0.182 4.182 21 C -0.219 4.219 22 C 0.018 3.982 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.183 0.817 31 H 0.168 0.832 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.068 -12.054 -3.425 21.988 hybrid contribution -0.613 0.807 -0.047 1.015 sum 17.455 -11.246 -3.473 21.053 Atomic orbital electron populations 1.70027 1.07922 1.27886 1.52824 1.25744 0.95315 1.02572 0.94393 0.85915 0.78685 0.79396 0.78799 1.18459 1.22980 1.18597 1.21268 0.90885 0.93424 1.49738 0.93570 1.19411 0.93850 0.94540 0.94381 0.97506 1.21825 0.95115 0.98995 0.99688 1.21887 0.95397 0.97796 1.02403 1.21549 0.98210 0.91326 0.89565 1.57604 1.16328 1.65384 1.44777 1.04982 0.72686 0.78072 0.73995 1.93542 1.70320 1.88005 1.46808 1.93510 1.45559 1.71847 1.86885 1.30021 1.09828 1.18758 1.11464 1.21848 1.03179 0.92002 1.03597 1.23138 1.00832 0.94476 0.99723 1.23321 0.99782 0.99589 0.99247 1.21276 0.77199 0.97705 1.01986 0.92580 0.90927 0.95088 0.88412 0.93806 0.87916 0.88326 0.81741 0.83227 0.87264 0.86725 0.86905 0.87752 0.87396 0.90017 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 2 C 0.02 1.00 5.45 84.65 0.46 1.46 16 3 Si 0.94 46.19 24.39 68.60 1.67 47.87 16 4 H -0.26 -11.74 6.86 99.48 0.68 -11.05 16 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.26 -12.48 6.53 99.48 0.65 -11.83 16 7 C -0.51 -28.97 9.14 25.60 0.23 -28.74 16 8 H 0.05 2.80 7.99 -2.91 -0.02 2.77 16 9 C 0.00 -0.06 1.84 -11.46 -0.02 -0.08 16 10 H 0.01 0.35 7.20 -2.38 -0.02 0.33 16 11 C -0.12 -4.74 4.66 30.62 0.14 -4.59 16 12 C -0.14 -4.24 6.06 30.53 0.19 -4.06 16 13 C 0.12 3.03 6.40 86.22 0.55 3.58 16 14 N -1.00 -30.72 3.23 -513.86 -1.66 -32.38 16 15 S 2.60 75.69 5.40 -56.49 -0.31 75.39 16 16 O -1.00 -38.11 16.59 -127.65 -2.12 -40.23 16 17 O -0.99 -32.52 16.58 -127.65 -2.12 -34.63 16 18 C -0.57 -10.03 6.46 71.98 0.46 -9.57 16 19 C -0.19 -3.28 5.75 -10.77 -0.06 -3.35 16 20 C -0.14 -1.76 10.25 30.60 0.31 -1.45 16 21 C -0.18 -2.83 10.18 30.62 0.31 -2.52 16 22 C 0.14 5.39 5.66 86.36 0.49 5.88 16 23 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.03 1.33 3.27 -2.39 -0.01 1.33 16 26 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 2.30 6.85 -2.39 -0.02 2.28 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.15 2.26 7.87 -2.39 -0.02 2.24 16 32 H 0.11 1.99 8.06 -2.39 -0.02 1.97 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.55 8.03 -2.38 -0.02 1.53 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 38 H 0.07 2.93 6.86 -2.39 -0.02 2.92 16 Total: -1.00 -76.13 310.22 -0.20 -76.33 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.96 Total: 9.84 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 3.07 Total: -43.43 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -1.36 Total: -91.14 kcal Atomic # 8 Polarization: -70.63 SS G_CDS: -4.23 Total: -74.86 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.87 kcal Atomic # 16 Polarization: 75.69 SS G_CDS: -0.31 Total: 75.39 kcal Total: -76.13 -0.20 -76.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397578429.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.779 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds