Wall clock time and date at job start Mon Mar 30 2020 01:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47451 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47165 * 299.99877 * 3 2 1 6 6 H 1.48501 * 109.46985 * 60.00087 * 3 2 1 7 7 C 1.38802 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53004 * 109.41904 * 178.67276 * 16 15 14 18 18 C 1.52999 * 109.47001 * 295.13027 * 17 16 15 19 19 O 1.42901 * 109.46824 * 179.97438 * 18 17 16 20 20 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 21 21 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 22 22 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46598 * 59.99628 * 10 9 7 24 24 H 1.09001 * 109.47042 * 299.99889 * 10 9 7 25 25 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 26 26 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 27 27 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 28 28 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 29 29 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 30 30 H 1.09001 * 109.46592 * 55.13132 * 17 16 15 31 31 H 1.08997 * 109.47133 * 175.12697 * 17 16 15 32 32 H 1.08991 * 109.47450 * 299.99495 * 18 17 16 33 33 H 1.08999 * 109.47142 * 60.00302 * 18 17 16 34 34 H 0.96698 * 114.00120 * 179.97438 * 19 18 17 35 35 H 1.08994 * 109.50232 * 301.42239 * 20 16 15 36 36 H 1.09007 * 109.52628 * 181.33900 * 20 16 15 37 37 H 1.08994 * 109.58580 * 353.38021 * 21 13 11 38 38 H 1.09006 * 109.57831 * 113.65514 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3439 -7.7247 0.0019 15 6 2.9815 -8.4840 -1.1659 16 6 4.5073 -8.3646 -1.0703 17 6 5.1516 -9.1487 -2.2154 18 6 4.8475 -10.6388 -2.0476 19 8 5.4487 -11.3710 -3.1174 20 6 4.9144 -6.8927 -1.1679 21 6 4.2958 -6.1174 0.0003 22 1 -0.4849 0.8400 -0.0004 23 1 3.1244 -3.7314 0.8905 24 1 3.1244 -3.7315 -0.8895 25 1 2.6101 -8.2089 0.9415 26 1 1.2600 -7.7211 -0.1129 27 1 2.6917 -9.5337 -1.1189 28 1 2.6417 -8.0542 -2.1081 29 1 4.8437 -8.7720 -0.1169 30 1 4.7484 -8.8003 -3.1662 31 1 6.2304 -8.9940 -2.1997 32 1 5.2507 -10.9871 -1.0968 33 1 3.7686 -10.7934 -2.0633 34 1 5.2969 -12.3250 -3.0751 35 1 4.5566 -6.4779 -2.1102 36 1 6.0005 -6.8114 -1.1237 37 1 4.5001 -5.0533 -0.1181 38 1 4.7204 -6.4686 0.9408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401103378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:08 Heat of formation + Delta-G solvation = -104.001722 kcal Electronic energy + Delta-G solvation = -18806.835410 eV Core-core repulsion = 15774.774124 eV Total energy + Delta-G solvation = -3032.061286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00821 -38.05314 -36.80297 -34.07198 -32.42583 -31.55828 -30.12209 -28.51908 -25.51757 -25.08300 -23.29008 -22.11684 -20.59871 -19.06405 -17.83767 -17.54545 -16.61484 -15.82231 -15.57238 -15.21274 -14.80493 -14.76834 -14.37071 -13.97337 -13.75580 -13.59339 -13.23172 -12.95812 -12.66902 -12.28835 -12.06434 -11.78604 -11.65950 -11.38259 -11.10279 -11.06620 -11.00933 -10.75540 -10.66964 -10.58043 -10.22186 -9.78653 -9.32362 -9.07147 -8.49720 -8.21306 -6.49634 -6.21417 -3.91843 2.95808 3.07298 3.21759 3.26775 3.31541 3.61333 3.81382 4.20450 4.44954 4.49220 4.69347 4.82609 4.90158 4.99644 5.01749 5.13788 5.14184 5.19984 5.28552 5.37075 5.51097 5.57643 5.63074 5.66878 5.71913 5.80637 5.86255 5.89102 5.94086 5.99746 6.12497 6.21312 6.68014 7.25697 7.58389 7.60615 8.35730 8.58461 9.23990 10.86114 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038606 B = 0.003374 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.103813 B = 8296.776328 C = 8737.254262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.063 6.063 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.518 6.518 13 N -0.620 5.620 14 C 0.112 3.888 15 C -0.132 4.132 16 C -0.084 4.084 17 C -0.115 4.115 18 C 0.073 3.927 19 O -0.577 6.577 20 C -0.129 4.129 21 C 0.108 3.892 22 H 0.268 0.732 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.378 0.622 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.080 -19.955 -1.633 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.164 5.836 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.393 6.393 13 N -0.356 5.356 14 C -0.010 4.010 15 C -0.170 4.170 16 C -0.102 4.102 17 C -0.152 4.152 18 C -0.005 4.005 19 O -0.383 6.383 20 C -0.168 4.168 21 C -0.015 4.015 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.225 0.775 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.318 -19.526 -1.799 22.157 hybrid contribution 1.870 0.685 0.198 2.001 sum 12.187 -18.841 -1.602 22.496 Atomic orbital electron populations 1.70031 1.05957 1.27328 1.46974 1.25000 0.95034 0.99048 0.94565 0.86112 0.79579 0.81874 0.77893 1.19610 1.20572 1.20575 1.22897 0.94904 0.91607 1.58786 0.90904 1.85409 1.05098 0.96395 1.96687 1.23552 1.06414 0.95450 1.04667 1.20333 0.86214 0.86233 0.74946 1.90684 1.15219 1.85254 1.48122 1.48103 1.06341 1.05769 1.75427 1.21491 1.00707 0.81340 0.97502 1.22119 0.94840 1.00356 0.99699 1.21136 0.95297 0.95367 0.98441 1.21560 1.01493 0.92749 0.99447 1.22291 0.96558 0.92543 0.89062 1.86479 1.78460 1.23214 1.50124 1.21970 1.00670 0.94613 0.99514 1.21719 0.80088 1.01555 0.98168 0.92247 0.89300 0.89279 0.92012 0.88909 0.90872 0.91184 0.90844 0.91089 0.91178 0.93770 0.93319 0.77501 0.91067 0.90603 0.89144 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.15 -3.09 4.50 36.00 0.16 -2.92 16 11 C 0.53 10.32 7.72 -10.99 -0.08 10.24 16 12 O -0.52 -12.01 15.27 5.56 0.08 -11.92 16 13 N -0.62 -8.85 2.97 -172.74 -0.51 -9.36 16 14 C 0.11 1.35 6.42 -3.71 -0.02 1.32 16 15 C -0.13 -1.24 5.16 -26.45 -0.14 -1.37 16 16 C -0.08 -0.68 2.15 -90.42 -0.19 -0.88 16 17 C -0.11 -0.93 5.05 -26.73 -0.14 -1.07 16 18 C 0.07 0.53 6.80 37.16 0.25 0.78 16 19 O -0.58 -4.76 13.66 -35.23 -0.48 -5.24 16 20 C -0.13 -1.17 5.37 -26.59 -0.14 -1.31 16 21 C 0.11 1.18 6.34 -3.68 -0.02 1.15 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 24 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 27 H 0.07 0.55 6.52 -51.93 -0.34 0.21 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.32 6.53 -51.93 -0.34 -0.02 16 34 H 0.38 1.38 9.12 45.56 0.42 1.79 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -35.25 321.23 -7.79 -43.05 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -5.09 Total: -1.30 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.13 Total: -7.02 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.22 Total: -34.90 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.40 Total: -17.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.25 -7.79 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401103378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.955 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds