Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46868 * 2 1 4 4 O 1.42898 * 109.47202 * 239.99986 * 2 1 3 5 5 C 1.53008 * 109.46963 * 119.99760 * 2 1 3 6 6 H 1.08995 * 109.99725 * 173.33762 * 5 2 1 7 7 C 1.54324 * 109.88136 * 294.43768 * 5 2 1 8 8 C 1.55156 * 102.93945 * 141.60949 * 7 5 2 9 9 C 1.55125 * 101.48906 * 324.33197 * 8 7 5 10 10 N 1.47025 * 109.87893 * 52.24839 * 5 2 1 11 11 C 1.34771 * 125.65254 * 61.60297 * 10 5 2 12 12 O 1.21277 * 120.00151 * 357.49732 * 11 10 5 13 13 C 1.50700 * 119.99774 * 177.76887 * 11 10 5 14 14 S 1.81005 * 109.46786 * 179.72545 * 13 11 10 15 15 C 1.76203 * 99.99924 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99954 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00142 * 179.97438 * 15 14 13 18 18 N 1.31636 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00084 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46796 * 90.00546 * 19 17 15 21 21 H 1.48499 * 109.47154 * 209.99853 * 19 17 15 22 22 H 1.48492 * 109.47481 * 330.00582 * 19 17 15 23 23 H 1.09000 * 109.47565 * 300.00117 * 1 2 3 24 24 H 1.09003 * 109.47255 * 59.99939 * 1 2 3 25 25 H 1.09002 * 109.46933 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47261 * 174.10291 * 3 2 1 27 27 H 1.08996 * 109.47717 * 294.10068 * 3 2 1 28 28 H 1.09002 * 109.47431 * 54.10501 * 3 2 1 29 29 H 0.96701 * 114.00000 * 322.69563 * 4 2 1 30 30 H 1.09002 * 110.71690 * 259.97082 * 7 5 2 31 31 H 1.08997 * 110.71720 * 23.06920 * 7 5 2 32 32 H 1.09007 * 111.00585 * 82.57155 * 8 7 5 33 33 H 1.08997 * 111.00514 * 206.41996 * 8 7 5 34 34 H 1.09003 * 110.49638 * 278.45367 * 9 8 7 35 35 H 1.08997 * 110.34778 * 156.05992 * 9 8 7 36 36 H 1.08992 * 109.47342 * 299.72655 * 13 11 10 37 37 H 1.09000 * 109.47185 * 59.73321 * 13 11 10 38 38 H 0.97002 * 120.00068 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 3.1234 -0.8303 1.2006 7 6 1.6489 0.0756 2.5118 8 6 1.2835 -1.0394 3.5270 9 6 0.6231 -2.0952 2.6020 10 7 1.4085 -2.0447 1.3553 11 6 1.5238 -3.0442 0.4586 12 8 2.1578 -2.8739 -0.5611 13 6 0.8597 -4.3714 0.7202 14 16 1.1898 -5.4937 -0.6610 15 6 0.3220 -6.9238 -0.1074 16 1 -0.1987 -6.9069 0.8386 17 6 0.3067 -8.0717 -0.8875 18 7 0.9410 -8.0921 -2.0408 19 14 -0.6126 -9.5880 -0.3002 20 1 -2.0142 -9.5370 -0.7883 21 1 0.0519 -10.8059 -0.8298 22 1 -0.6066 -9.6266 1.1842 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1248 1.4443 0.1056 27 1 1.7654 1.9250 -0.9380 28 1 1.5930 1.9859 0.8325 29 1 1.4750 -1.4398 -1.4230 30 1 2.4921 0.6645 2.8726 31 1 0.7898 0.7162 2.3126 32 1 2.1770 -1.4393 4.0065 33 1 0.5738 -0.6744 4.2694 34 1 -0.4168 -1.8339 2.4061 35 1 0.6879 -3.0861 3.0513 36 1 1.2561 -4.8010 1.6401 37 1 -0.2158 -4.2260 0.8209 38 1 0.9306 -8.8945 -2.5859 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408038261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -84.874322 kcal Electronic energy + Delta-G solvation = -19903.175912 eV Core-core repulsion = 16871.944052 eV Total energy + Delta-G solvation = -3031.231860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55547 -37.62567 -36.46267 -32.45462 -32.40000 -31.45863 -29.28147 -27.99864 -27.23549 -25.50568 -23.66181 -21.95223 -20.29561 -18.56875 -17.76943 -17.19321 -16.77037 -15.84890 -15.09555 -14.97191 -14.81586 -14.20833 -14.09846 -13.70158 -13.44605 -13.05117 -12.75046 -12.54304 -12.32725 -12.20520 -12.09936 -12.04323 -11.62886 -11.51201 -11.35058 -11.07507 -11.04302 -11.01640 -10.76971 -10.47304 -9.84154 -9.77313 -9.30117 -9.07803 -8.37812 -8.24940 -6.51636 -6.22894 -3.93726 2.89234 2.96395 3.21298 3.25181 3.29497 3.59268 4.18650 4.27603 4.37265 4.55741 4.70478 4.87721 4.98302 5.03146 5.10259 5.12414 5.21088 5.33191 5.46721 5.52516 5.57811 5.58352 5.63939 5.69203 5.76104 5.87255 5.92268 5.94299 6.07053 6.11692 6.17454 6.19899 6.49672 7.58101 7.66400 8.13761 8.33775 8.63295 9.22439 10.84472 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.004645 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.532803 B = 6026.918694 C = 6569.483965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 C -0.139 4.139 4 O -0.552 6.552 5 C 0.117 3.883 6 H 0.079 0.921 7 C -0.128 4.128 8 C -0.133 4.133 9 C 0.098 3.902 10 N -0.619 5.619 11 C 0.543 3.457 12 O -0.499 6.499 13 C -0.148 4.148 14 S -0.057 6.057 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.385 0.615 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 17.391 11.380 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.076 3.924 3 C -0.196 4.196 4 O -0.367 6.367 5 C 0.013 3.987 6 H 0.097 0.903 7 C -0.166 4.166 8 C -0.171 4.171 9 C -0.025 4.025 10 N -0.356 5.356 11 C 0.333 3.667 12 O -0.374 6.374 13 C -0.299 4.299 14 S 0.169 5.831 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.242 0.758 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.539 17.885 9.654 20.332 hybrid contribution -1.811 -1.687 1.672 2.987 sum -2.350 16.198 11.326 19.904 Atomic orbital electron populations 1.22545 0.96091 1.02720 1.02259 1.21389 0.92487 0.92406 0.86091 1.21799 1.01817 0.93838 1.02188 1.86511 1.58550 1.47963 1.43632 1.22263 0.98326 0.82852 0.95219 0.90272 1.22768 1.02317 0.97494 0.94037 1.22811 1.01333 0.95718 0.97197 1.22366 0.95212 1.00342 0.84561 1.48647 1.50796 1.13412 1.22781 1.20127 0.80043 0.84216 0.82363 1.90552 1.40458 1.80804 1.25630 1.23533 1.02788 0.96269 1.07282 1.85398 1.69794 1.06553 1.21319 1.22856 1.37994 0.98808 1.08802 0.90993 1.24983 0.95456 0.98473 0.94584 1.70018 1.40089 1.29075 1.11040 0.86176 0.79490 0.80971 0.78915 1.20263 1.20725 1.19707 0.91763 0.91987 0.92100 0.92013 0.91855 0.91558 0.75797 0.90095 0.90134 0.90487 0.89926 0.91427 0.90332 0.89374 0.89442 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.16 37.16 0.30 -1.76 16 2 C 0.12 1.55 0.94 -90.62 -0.08 1.46 16 3 C -0.14 -1.44 8.38 37.15 0.31 -1.13 16 4 O -0.55 -9.78 11.54 -59.41 -0.69 -10.47 16 5 C 0.12 1.47 2.59 -66.95 -0.17 1.30 16 6 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.13 -1.06 5.24 -24.90 -0.13 -1.19 16 8 C -0.13 -1.04 7.10 -24.47 -0.17 -1.21 16 9 C 0.10 1.03 6.72 -2.41 -0.02 1.01 16 10 N -0.62 -8.74 2.06 -162.87 -0.34 -9.08 16 11 C 0.54 10.13 7.23 -10.99 -0.08 10.06 16 12 O -0.50 -10.98 11.96 -18.62 -0.22 -11.20 16 13 C -0.15 -2.98 5.12 36.01 0.18 -2.80 16 14 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 15 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 16 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 19 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H 0.06 0.59 6.40 -51.93 -0.33 0.25 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.81 7.22 -51.93 -0.37 0.43 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 29 H 0.38 7.34 5.83 45.55 0.27 7.60 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.58 5.49 -51.93 -0.28 0.29 16 32 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 36 H 0.09 1.68 7.91 -51.92 -0.41 1.27 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 313.35 15.07 4.72 4.72 Total: -1.00 -33.27 313.35 -7.92 -41.19 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.23 Total: 4.76 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 0.34 Total: -7.13 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.40 Total: -34.42 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.91 Total: -21.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.27 -7.92 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408038261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.689 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds