Wall clock time and date at job start Mon Mar 30 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46850 * 2 1 4 4 C 1.52994 * 109.67619 * 65.39153 * 3 2 1 5 5 C 1.53288 * 109.68345 * 304.83324 * 3 2 1 6 6 O 1.42966 * 109.22067 * 187.97725 * 5 3 2 7 7 C 1.42953 * 114.16947 * 62.58138 * 6 5 3 8 8 C 1.53718 * 109.14834 * 297.28532 * 7 6 5 9 9 N 1.47153 * 109.68093 * 185.90260 * 3 2 1 10 10 C 1.34779 * 120.98106 * 350.24056 * 9 3 2 11 11 O 1.21275 * 120.00352 * 354.46926 * 10 9 3 12 12 C 1.50708 * 120.00043 * 174.46809 * 10 9 3 13 13 S 1.80991 * 109.47275 * 180.02562 * 12 10 9 14 14 C 1.76195 * 100.00089 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00168 * 179.72626 * 14 13 12 17 17 N 1.31626 * 119.99845 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99831 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46965 * 90.00207 * 18 16 14 20 20 H 1.48498 * 109.47301 * 210.00132 * 18 16 14 21 21 H 1.48498 * 109.47102 * 330.00314 * 18 16 14 22 22 H 1.08994 * 109.47579 * 59.99792 * 1 2 3 23 23 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47020 * 299.99214 * 1 2 3 25 25 H 1.09003 * 109.47066 * 240.00276 * 2 1 3 26 26 H 1.09000 * 109.47577 * 120.00629 * 2 1 3 27 27 H 1.08998 * 109.47132 * 180.51553 * 4 3 2 28 28 H 1.09004 * 109.47394 * 300.51350 * 4 3 2 29 29 H 1.09006 * 109.47652 * 60.51607 * 4 3 2 30 30 H 1.08999 * 109.51294 * 307.89525 * 5 3 2 31 31 H 1.09000 * 109.51300 * 67.99907 * 5 3 2 32 32 H 1.08998 * 109.51819 * 57.34033 * 7 6 5 33 33 H 1.09007 * 109.51338 * 177.49516 * 7 6 5 34 34 H 1.08998 * 109.83872 * 292.86296 * 8 7 6 35 35 H 1.09002 * 109.74663 * 172.16310 * 8 7 6 36 36 H 1.08998 * 109.46938 * 59.99747 * 12 10 9 37 37 H 1.09002 * 109.47145 * 300.00081 * 12 10 9 38 38 H 0.97006 * 119.99961 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6460 2.1282 1.3098 5 6 1.4347 2.2041 -1.1847 6 8 2.0560 3.4878 -1.2858 7 6 3.4601 3.4393 -1.5498 8 6 4.1696 2.7418 -0.3781 9 7 3.5045 1.4505 -0.1425 10 6 4.2163 0.3094 -0.0543 11 8 3.6642 -0.7283 0.2444 12 6 5.6985 0.3228 -0.3268 13 16 6.3634 -1.3489 -0.1295 14 6 8.0606 -1.0483 -0.4951 15 1 8.3906 -0.0509 -0.7453 16 6 8.9744 -2.0924 -0.4565 17 7 10.2422 -1.8678 -0.7302 18 14 8.4050 -3.8161 -0.0163 19 1 8.0090 -4.5374 -1.2525 20 1 9.5117 -4.5479 0.6507 21 1 7.2415 -3.7334 0.9027 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0029 3.1581 1.3024 28 1 0.5608 2.1205 1.4119 29 1 2.0937 1.5946 2.1483 30 1 1.6059 1.6435 -2.1036 31 1 0.3632 2.3286 -1.0284 32 1 3.6387 2.8831 -2.4700 33 1 3.8458 4.4534 -1.6557 34 1 4.0996 3.3595 0.5173 35 1 5.2172 2.5749 -0.6287 36 1 6.1909 0.9954 0.3755 37 1 5.8775 0.6668 -1.3455 38 1 10.8809 -2.5974 -0.7028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408086229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:33 Heat of formation + Delta-G solvation = -70.279137 kcal Electronic energy + Delta-G solvation = -19936.415336 eV Core-core repulsion = 16905.816370 eV Total energy + Delta-G solvation = -3030.598965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84417 -38.22277 -35.65710 -34.44131 -32.46560 -30.12357 -29.64925 -28.32401 -26.48446 -25.65542 -24.56633 -22.40500 -21.05598 -18.68070 -17.64846 -16.75191 -16.63488 -15.86217 -15.69162 -15.22285 -15.07115 -15.00305 -14.26269 -13.92237 -13.51997 -13.42114 -13.14204 -12.86567 -12.78127 -12.32860 -12.11661 -11.96198 -11.74686 -11.45713 -11.36651 -11.25714 -11.03440 -10.71634 -10.62547 -10.60129 -10.23369 -9.87415 -9.02850 -8.86879 -8.52605 -8.47949 -6.94866 -6.31544 -4.03455 2.61205 2.88229 3.09765 3.30780 3.48004 3.54535 3.60945 4.30295 4.45127 4.53877 4.70747 4.79928 4.84547 4.96796 5.06789 5.07907 5.17085 5.21512 5.36396 5.37261 5.47077 5.51088 5.53771 5.65438 5.67220 5.71235 5.83916 5.94359 5.98760 6.08431 6.30871 6.38632 6.70974 6.90014 7.43670 7.91428 8.38629 8.41833 9.14657 10.77716 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029294 B = 0.005020 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.611265 B = 5576.570228 C = 6251.629988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.111 4.111 3 C 0.141 3.859 4 C -0.152 4.152 5 C 0.057 3.943 6 O -0.379 6.379 7 C 0.046 3.954 8 C 0.072 3.928 9 N -0.615 5.615 10 C 0.536 3.464 11 O -0.509 6.509 12 C -0.124 4.124 13 S -0.141 6.141 14 C -0.522 4.522 15 H 0.088 0.912 16 C 0.097 3.903 17 N -0.880 5.880 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 10.592 0.209 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.148 4.148 3 C 0.056 3.944 4 C -0.210 4.210 5 C -0.020 4.020 6 O -0.297 6.297 7 C -0.031 4.031 8 C -0.052 4.052 9 N -0.352 5.352 10 C 0.324 3.676 11 O -0.384 6.384 12 C -0.274 4.274 13 S 0.086 5.914 14 C -0.670 4.670 15 H 0.106 0.894 16 C -0.112 4.112 17 N -0.517 5.517 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.139 9.144 0.649 20.324 hybrid contribution 1.038 0.327 -0.302 1.129 sum -17.101 9.471 0.348 19.551 Atomic orbital electron populations 1.22048 0.96692 1.01920 1.01234 1.22013 0.93855 0.93198 1.05748 1.21315 0.79741 0.97585 0.95731 1.22095 1.01628 1.00863 0.96401 1.23123 0.97701 0.84370 0.96840 1.87932 1.21238 1.28109 1.92434 1.23076 0.81602 1.01821 0.96629 1.22527 0.98301 0.85041 0.99289 1.48247 1.06284 1.07025 1.73660 1.20275 0.88588 0.82721 0.76022 1.90702 1.70489 1.31375 1.45785 1.23355 0.93909 1.05071 1.05077 1.84764 1.08364 1.06395 1.91914 1.22307 0.90405 0.99761 1.54478 0.89433 1.24704 0.94018 0.99077 0.93425 1.69936 1.01788 1.33209 1.46724 0.86740 0.80329 0.84154 0.80664 1.19216 1.19916 1.15926 0.93143 0.92369 0.92642 0.91069 0.88451 0.92001 0.91380 0.92148 0.92639 0.87747 0.92398 0.87664 0.90496 0.88259 0.88642 0.88706 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.21 37.16 0.34 -1.25 16 2 C -0.11 -1.46 3.43 -26.73 -0.09 -1.55 16 3 C 0.14 1.71 0.80 -131.32 -0.11 1.60 16 4 C -0.15 -1.64 8.30 37.15 0.31 -1.33 16 5 C 0.06 0.61 4.89 37.31 0.18 0.79 16 6 O -0.38 -4.21 10.37 -35.23 -0.37 -4.57 16 7 C 0.05 0.45 7.00 37.53 0.26 0.71 16 8 C 0.07 0.78 6.18 -3.31 -0.02 0.76 16 9 N -0.62 -8.47 2.71 -157.26 -0.43 -8.90 16 10 C 0.54 9.47 7.51 -10.98 -0.08 9.39 16 11 O -0.51 -10.36 11.63 5.56 0.06 -10.29 16 12 C -0.12 -2.37 4.53 36.01 0.16 -2.21 16 13 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 14 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 15 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 16 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 17 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 18 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 22 H 0.05 0.43 6.55 -51.93 -0.34 0.09 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.49 6.58 -51.93 -0.34 0.15 16 25 H 0.07 1.09 7.19 -51.93 -0.37 0.72 16 26 H 0.10 1.54 6.40 -51.93 -0.33 1.21 16 27 H 0.06 0.65 7.21 -51.93 -0.37 0.28 16 28 H 0.07 0.62 6.57 -51.93 -0.34 0.27 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.92 6.86 -51.93 -0.36 0.56 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.08 0.76 7.65 -51.93 -0.40 0.37 16 35 H 0.10 1.05 6.04 -51.93 -0.31 0.73 16 36 H 0.10 1.72 7.79 -51.92 -0.40 1.32 16 37 H 0.09 1.71 7.89 -51.91 -0.41 1.30 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -32.36 307.11 -6.53 -38.90 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.68 Total: -0.58 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 1.17 Total: -4.97 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.35 Total: -34.52 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.30 Total: -14.87 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.36 -6.53 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408086229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.382 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds