Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47284 * 2 1 4 4 C 1.53003 * 109.68109 * 293.76293 * 3 2 1 5 5 C 1.53297 * 109.68340 * 54.27778 * 3 2 1 6 6 O 1.42964 * 109.22256 * 172.02378 * 5 3 2 7 7 C 1.42960 * 114.16598 * 297.41861 * 6 5 3 8 8 C 1.53298 * 109.26264 * 62.56200 * 7 6 5 9 9 N 1.47149 * 109.68150 * 173.20882 * 3 2 1 10 10 C 1.34777 * 120.98179 * 9.74880 * 9 3 2 11 11 O 1.21281 * 120.00062 * 5.59758 * 10 9 3 12 12 C 1.50704 * 120.00036 * 185.59036 * 10 9 3 13 13 S 1.80996 * 109.47218 * 180.02562 * 12 10 9 14 14 C 1.76200 * 100.00304 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99700 * 359.97438 * 14 13 12 16 16 C 1.38793 * 120.00165 * 180.02562 * 14 13 12 17 17 N 1.31634 * 119.99884 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00183 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46903 * 90.00180 * 18 16 14 20 20 H 1.48496 * 109.47605 * 210.00440 * 18 16 14 21 21 H 1.48503 * 109.47184 * 330.00487 * 18 16 14 22 22 H 1.09004 * 109.46950 * 299.99865 * 1 2 3 23 23 H 1.09004 * 109.47233 * 59.99235 * 1 2 3 24 24 H 1.08993 * 109.47435 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46566 * 240.00131 * 2 1 3 26 26 H 1.08990 * 109.46932 * 120.00250 * 2 1 3 27 27 H 1.09001 * 109.47276 * 180.51825 * 4 3 2 28 28 H 1.09003 * 109.46795 * 300.51570 * 4 3 2 29 29 H 1.08998 * 109.47046 * 60.51695 * 4 3 2 30 30 H 1.09005 * 109.51145 * 52.10329 * 5 3 2 31 31 H 1.08997 * 109.55454 * 291.97459 * 5 3 2 32 32 H 1.09002 * 109.51159 * 182.50715 * 7 6 5 33 33 H 1.08999 * 109.51535 * 302.61010 * 7 6 5 34 34 H 1.08991 * 109.68290 * 67.44390 * 8 7 6 35 35 H 1.09003 * 109.67944 * 188.00263 * 8 7 6 36 36 H 1.08999 * 109.47225 * 300.00821 * 12 10 9 37 37 H 1.09007 * 109.46787 * 60.00362 * 12 10 9 38 38 H 0.97000 * 119.99922 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6645 2.1218 -1.3185 5 6 1.4176 2.2102 1.1718 6 8 2.0374 3.4943 1.2754 7 6 3.4375 3.4471 1.5602 8 6 4.1643 2.7425 0.4089 9 7 3.5023 1.4510 0.1638 10 6 4.2152 0.3095 0.0922 11 8 3.6675 -0.7295 -0.2102 12 6 5.6930 0.3241 0.3875 13 16 6.3609 -1.3484 0.2072 14 6 8.0520 -1.0466 0.5993 15 1 8.3781 -0.0481 0.8504 16 6 8.9651 -2.0917 0.5844 17 7 10.2283 -1.8663 0.8778 18 14 8.4011 -3.8186 0.1493 19 1 8.5192 -4.0232 -1.3168 20 1 9.2502 -4.8099 0.8575 21 1 6.9854 -3.9955 0.5613 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0374 3.1460 -1.3186 28 1 2.1087 1.5733 -2.1492 29 1 0.5800 2.1299 -1.4270 30 1 1.5753 1.6542 2.0961 31 1 0.3486 2.3347 0.9997 32 1 3.8218 4.4616 1.6665 33 1 3.6024 2.8964 2.4862 34 1 4.1119 3.3574 -0.4894 35 1 5.2068 2.5759 0.6802 36 1 6.1964 0.9933 -0.3102 37 1 5.8562 0.6729 1.4073 38 1 10.8666 -2.5966 0.8671 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408086230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = -70.541984 kcal Electronic energy + Delta-G solvation = -19937.199320 eV Core-core repulsion = 16906.588957 eV Total energy + Delta-G solvation = -3030.610363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84894 -38.22544 -35.65918 -34.44734 -32.46505 -30.13795 -29.66015 -28.33258 -26.48584 -25.65594 -24.55989 -22.39968 -21.06049 -18.67765 -17.65018 -16.75904 -16.63740 -15.86428 -15.69667 -15.21802 -15.07182 -15.00271 -14.25703 -13.92941 -13.51379 -13.42368 -13.14075 -12.86676 -12.77956 -12.33127 -12.12928 -11.96615 -11.74836 -11.45610 -11.36463 -11.25681 -11.03553 -10.70903 -10.62558 -10.60363 -10.23426 -9.87340 -9.02956 -8.87661 -8.52629 -8.48203 -6.94891 -6.31517 -4.03502 2.61050 2.88253 3.09631 3.30893 3.47900 3.54485 3.60859 4.30257 4.44889 4.54392 4.70803 4.79839 4.84965 4.96306 5.06837 5.07844 5.17024 5.21512 5.36412 5.37227 5.47101 5.50705 5.53703 5.65302 5.67182 5.71180 5.83685 5.94310 5.98862 6.08427 6.30733 6.38648 6.70546 6.89866 7.43483 7.91475 8.38602 8.41709 9.14685 10.77739 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.005020 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.439281 B = 5576.658950 C = 6250.331757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C 0.141 3.859 4 C -0.151 4.151 5 C 0.057 3.943 6 O -0.379 6.379 7 C 0.046 3.954 8 C 0.072 3.928 9 N -0.615 5.615 10 C 0.536 3.464 11 O -0.509 6.509 12 C -0.124 4.124 13 S -0.141 6.141 14 C -0.522 4.522 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.455 10.563 -0.342 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.147 4.147 3 C 0.056 3.944 4 C -0.209 4.209 5 C -0.020 4.020 6 O -0.297 6.297 7 C -0.031 4.031 8 C -0.052 4.052 9 N -0.352 5.352 10 C 0.324 3.676 11 O -0.383 6.383 12 C -0.274 4.274 13 S 0.086 5.914 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.112 4.112 17 N -0.517 5.517 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.161 9.112 -0.784 20.334 hybrid contribution 1.045 0.339 0.257 1.129 sum -17.115 9.452 -0.527 19.559 Atomic orbital electron populations 1.22049 0.96694 1.01928 1.01235 1.21994 0.93842 0.93182 1.05706 1.21313 0.79782 0.97577 0.95697 1.22091 1.01657 1.00888 0.96311 1.23132 0.97639 0.84334 0.96944 1.87937 1.21623 1.28095 1.92052 1.22997 0.81681 1.01805 0.96659 1.22442 0.98279 0.85044 0.99400 1.48244 1.06504 1.06968 1.73478 1.20274 0.88498 0.82727 0.76120 1.90708 1.70537 1.31269 1.45835 1.23355 0.93963 1.05065 1.05027 1.84767 1.08945 1.05987 1.91741 1.22306 0.90747 0.99604 1.54282 0.89432 1.24703 0.94017 0.99091 0.93414 1.69938 1.01990 1.33182 1.46555 0.86739 0.81392 0.83913 0.79827 1.19204 1.19923 1.15945 0.93126 0.92659 0.92362 0.88599 0.90992 0.92009 0.92149 0.91402 0.92638 0.87737 0.87637 0.92439 0.90526 0.88242 0.88679 0.88666 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.20 37.16 0.34 -1.25 16 2 C -0.11 -1.45 3.43 -26.73 -0.09 -1.54 16 3 C 0.14 1.71 0.80 -131.31 -0.11 1.60 16 4 C -0.15 -1.63 8.31 37.16 0.31 -1.32 16 5 C 0.06 0.61 4.85 37.31 0.18 0.79 16 6 O -0.38 -4.21 10.39 -35.23 -0.37 -4.57 16 7 C 0.05 0.45 6.98 37.31 0.26 0.71 16 8 C 0.07 0.78 6.16 -3.52 -0.02 0.76 16 9 N -0.62 -8.47 2.71 -157.50 -0.43 -8.90 16 10 C 0.54 9.47 7.50 -10.98 -0.08 9.39 16 11 O -0.51 -10.36 11.63 5.56 0.06 -10.30 16 12 C -0.12 -2.37 4.52 36.01 0.16 -2.21 16 13 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 14 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 15 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 16 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 17 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 18 Si 0.86 21.66 27.74 -169.99 -4.71 16.94 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 22 H 0.05 0.43 6.54 -51.93 -0.34 0.09 16 23 H 0.05 0.49 6.64 -51.93 -0.34 0.14 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.10 1.51 6.46 -51.93 -0.34 1.18 16 26 H 0.07 1.11 7.13 -51.93 -0.37 0.74 16 27 H 0.06 0.65 7.21 -51.93 -0.37 0.28 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.61 6.65 -51.93 -0.35 0.27 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.92 6.86 -51.93 -0.36 0.56 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.76 7.65 -51.93 -0.40 0.36 16 35 H 0.10 1.05 6.04 -51.93 -0.31 0.74 16 36 H 0.09 1.71 7.80 -51.92 -0.40 1.31 16 37 H 0.10 1.71 7.88 -51.91 -0.41 1.30 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 307.16 15.07 4.63 4.63 Total: -1.00 -32.37 307.16 -6.55 -38.92 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.68 Total: -0.61 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 1.17 Total: -4.96 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.35 Total: -34.53 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.30 Total: -14.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.37 -6.55 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408086230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.624 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds