Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48502 * 109.47097 * 272.54999 * 3 2 1 5 5 H 1.48492 * 109.47059 * 32.55371 * 3 2 1 6 6 H 1.48503 * 109.46919 * 152.55470 * 3 2 1 7 7 C 1.37880 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00243 * 354.70099 * 7 2 1 9 9 C 1.50698 * 120.00181 * 174.70505 * 7 2 1 10 10 C 1.53000 * 115.55117 * 88.54797 * 9 7 2 11 11 S 1.81399 * 109.47055 * 65.27064 * 10 9 7 12 12 O 1.42093 * 110.54593 * 62.05759 * 11 10 9 13 13 O 1.42102 * 110.54044 * 285.30465 * 11 10 9 14 14 N 1.65603 * 104.44865 * 173.68404 * 11 10 9 15 15 C 1.46501 * 120.00231 * 64.99490 * 14 11 10 16 16 C 1.55232 * 110.47078 * 259.80927 * 15 14 11 17 17 C 1.54891 * 102.58854 * 203.39212 * 16 15 14 18 18 C 1.54274 * 104.31018 * 37.93441 * 17 16 15 19 19 C 1.53875 * 106.59798 * 336.32057 * 18 17 16 20 20 C 1.52997 * 117.50019 * 234.21837 * 9 7 2 21 21 C 1.53003 * 117.49852 * 302.87759 * 9 7 2 22 22 H 0.96995 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47113 * 305.26783 * 10 9 7 24 24 H 1.09002 * 109.47236 * 185.27044 * 10 9 7 25 25 H 0.97002 * 119.99783 * 244.99806 * 14 11 10 26 26 H 1.09001 * 110.43418 * 22.46191 * 15 14 11 27 27 H 1.09003 * 110.89891 * 85.10489 * 16 15 14 28 28 H 1.09002 * 110.76666 * 321.62498 * 16 15 14 29 29 H 1.08999 * 110.48952 * 279.19072 * 17 16 15 30 30 H 1.09003 * 110.48683 * 156.67145 * 17 16 15 31 31 H 1.09004 * 110.02978 * 95.60522 * 18 17 16 32 32 H 1.09000 * 110.03246 * 216.98714 * 18 17 16 33 33 H 1.09000 * 110.02966 * 119.28634 * 19 18 17 34 34 H 1.08999 * 110.03051 * 240.66677 * 19 18 17 35 35 H 1.08995 * 117.50370 * 214.99744 * 20 9 7 36 36 H 1.09001 * 117.49833 * 0.02562 * 20 9 7 37 37 H 1.09002 * 117.49657 * 359.97438 * 21 9 7 38 38 H 1.09006 * 117.49808 * 144.96943 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4426 2.0776 -1.3987 5 1 1.4746 2.6364 0.7533 6 1 3.5726 1.4252 0.6453 7 6 2.0045 -1.1941 -0.0005 8 1 1.4680 -2.1274 0.0854 9 6 3.5067 -1.1968 -0.1210 10 6 4.2747 -1.1000 1.1988 11 16 3.9654 -2.5882 2.1889 12 8 4.4361 -3.7449 1.5110 13 8 2.6619 -2.5494 2.7534 14 7 4.9785 -2.4367 3.4900 15 6 4.7810 -1.3472 4.4493 16 6 5.7764 -0.1895 4.1686 17 6 5.8601 0.5240 5.5408 18 6 5.8208 -0.6241 6.5706 19 6 5.1347 -1.8138 5.8766 20 6 4.1243 -2.0411 -1.2374 21 6 4.1184 -0.5142 -1.3460 22 1 -0.4850 0.8400 -0.0004 23 1 3.9406 -0.2209 1.7499 24 1 5.3418 -1.0159 0.9928 25 1 5.7028 -3.0693 3.6170 26 1 3.7531 -0.9868 4.4096 27 1 5.3846 0.4840 3.4063 28 1 6.7511 -0.5803 3.8763 29 1 5.0072 1.1887 5.6779 30 1 6.7937 1.0803 5.6253 31 1 6.8345 -0.8971 6.8643 32 1 5.2475 -0.3205 7.4465 33 1 5.8153 -2.6641 5.8335 34 1 4.2281 -2.0884 6.4159 35 1 5.0778 -2.5275 -1.0319 36 1 3.4442 -2.5942 -1.8851 37 1 3.4343 -0.0635 -2.0651 38 1 5.0678 0.0042 -1.2117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408193693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = -61.284309 kcal Electronic energy + Delta-G solvation = -20259.153796 eV Core-core repulsion = 17228.944876 eV Total energy + Delta-G solvation = -3030.208920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.43868 -37.13056 -36.30089 -35.15003 -33.33728 -32.16673 -28.96437 -28.35607 -26.98748 -25.52542 -21.72077 -20.82327 -20.47597 -19.64043 -18.72849 -17.18970 -16.68308 -16.23914 -15.45903 -15.24476 -15.10320 -14.51542 -13.90616 -13.76312 -13.50244 -12.99238 -12.77631 -12.60117 -12.34861 -12.05952 -11.42781 -11.38343 -11.27147 -11.21444 -11.18718 -10.98442 -10.93674 -10.79083 -10.64739 -10.58662 -10.36733 -10.10012 -9.74540 -9.23526 -9.15976 -8.66735 -8.45854 -6.17167 -4.24536 0.96310 3.21342 3.31013 3.32092 3.37769 4.34165 4.40968 4.46457 4.52746 4.74477 4.82003 4.91606 5.07673 5.22682 5.33544 5.36216 5.39796 5.47477 5.54623 5.68032 5.77285 5.79134 5.80892 5.94477 5.96527 6.03711 6.09944 6.20277 6.22528 6.40283 6.42673 6.65716 6.88144 7.06243 7.23373 7.59555 8.36831 8.88439 9.43953 10.94373 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.007496 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.275360 B = 3734.205740 C = 4268.712384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.089 3.911 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.509 4.509 8 H 0.087 0.913 9 C 0.001 3.999 10 C -0.575 4.575 11 S 2.613 3.387 12 O -0.970 6.970 13 O -0.941 6.941 14 N -1.125 6.125 15 C 0.141 3.859 16 C -0.149 4.149 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.177 4.177 21 C -0.185 4.185 22 H 0.267 0.733 23 H 0.125 0.875 24 H 0.107 0.893 25 H 0.409 0.591 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.966 1.117 9.894 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.116 4.116 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.546 4.546 8 H 0.105 0.895 9 C -0.001 4.001 10 C -0.707 4.707 11 S 2.708 3.292 12 O -0.961 6.961 13 O -0.930 6.930 14 N -0.880 5.880 15 C 0.033 3.967 16 C -0.189 4.189 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.166 4.166 20 C -0.214 4.214 21 C -0.224 4.224 22 H 0.077 0.923 23 H 0.143 0.857 24 H 0.125 0.875 25 H 0.242 0.758 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.010 0.608 9.751 16.270 hybrid contribution 1.110 1.419 -0.071 1.803 sum 14.119 2.027 9.680 17.238 Atomic orbital electron populations 1.69891 1.06408 1.27312 1.48161 1.24948 0.94522 0.98953 0.93196 0.86928 0.80743 0.83496 0.78733 1.20162 1.21704 1.18051 1.20346 0.85983 0.95512 1.52761 0.89541 1.18859 0.94880 1.02572 0.83825 1.30334 1.07147 1.20667 1.12547 1.04965 0.73870 0.76630 0.73688 1.93513 1.81593 1.46217 1.74748 1.93582 1.36880 1.86841 1.75744 1.56046 1.50074 1.39980 1.41891 1.21767 1.00047 0.86170 0.88754 1.23181 1.00319 0.97571 0.97794 1.22314 1.02062 0.97527 0.94375 1.22108 1.00559 0.95132 0.98287 1.22391 1.01122 0.98283 0.94819 1.23020 1.01481 0.92833 1.04080 1.22986 1.01106 0.95250 1.03066 0.92293 0.85658 0.87480 0.75777 0.88025 0.90786 0.90624 0.91194 0.91532 0.91824 0.91635 0.91121 0.90906 0.90021 0.88647 0.88944 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.09 2.51 5.47 -17.82 -0.10 2.42 16 3 Si 0.87 20.86 24.96 -169.99 -4.24 16.61 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.26 -5.56 5.68 56.52 0.32 -5.23 16 7 C -0.51 -14.22 8.78 -34.44 -0.30 -14.52 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.00 0.03 0.79 -155.66 -0.12 -0.09 16 10 C -0.58 -11.10 5.55 37.16 0.21 -10.89 16 11 S 2.61 50.95 5.17 -107.50 -0.56 50.39 16 12 O -0.97 -20.69 18.08 -57.54 -1.04 -21.73 16 13 O -0.94 -22.38 17.11 -57.54 -0.98 -23.37 16 14 N -1.12 -15.81 5.46 -3.32 -0.02 -15.83 16 15 C 0.14 1.80 3.43 -66.08 -0.23 1.57 16 16 C -0.15 -1.64 6.61 -24.55 -0.16 -1.80 16 17 C -0.12 -1.16 6.82 -25.07 -0.17 -1.33 16 18 C -0.12 -1.07 6.80 -25.61 -0.17 -1.24 16 19 C -0.13 -1.31 6.54 -25.61 -0.17 -1.48 16 20 C -0.18 -3.66 9.96 -26.70 -0.27 -3.92 16 21 C -0.19 -3.83 7.67 -26.69 -0.20 -4.04 16 22 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.13 2.37 6.19 -51.92 -0.32 2.05 16 24 H 0.11 1.66 8.09 -51.92 -0.42 1.24 16 25 H 0.41 4.72 8.61 -34.47 -0.30 4.42 16 26 H 0.10 1.46 7.55 -51.93 -0.39 1.07 16 27 H 0.07 0.86 7.79 -51.93 -0.40 0.45 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 37 H 0.09 1.99 7.34 -51.93 -0.38 1.61 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 316.09 15.07 4.76 4.76 Total: -1.00 -33.92 316.09 -9.06 -42.98 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.07 Total: 7.43 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: -1.69 Total: -35.32 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.76 Total: -41.76 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -2.02 Total: -45.10 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.24 Total: 16.61 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.56 Total: 50.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.92 -9.06 -42.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408193693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.308 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds