Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42899 * 109.46055 * 64.99725 * 3 2 1 5 5 C 1.53038 * 109.45681 * 305.02293 * 3 2 1 6 6 C 1.53198 * 109.31056 * 178.59932 * 5 3 2 7 7 N 1.46922 * 108.76149 * 54.66121 * 6 5 3 8 8 C 1.34775 * 120.63129 * 126.36179 * 7 6 5 9 9 O 1.21290 * 120.00087 * 180.02562 * 8 7 6 10 10 C 1.50701 * 120.00081 * 0.02562 * 8 7 6 11 11 S 1.81001 * 109.47129 * 179.97438 * 10 8 7 12 12 C 1.76197 * 99.99979 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99939 * 0.02562 * 12 11 10 14 14 C 1.38800 * 120.00273 * 179.97438 * 12 11 10 15 15 N 1.31629 * 119.99852 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00028 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47232 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47003 * 120.00652 * 16 14 12 19 19 H 1.48501 * 109.47022 * 239.99976 * 16 14 12 20 20 C 1.46928 * 118.73969 * 306.37821 * 7 6 5 21 21 C 1.53038 * 109.45796 * 184.97135 * 3 2 1 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96695 * 113.99674 * 300.00090 * 4 3 2 28 28 H 1.09003 * 109.50293 * 298.56494 * 5 3 2 29 29 H 1.09005 * 109.49758 * 58.66881 * 5 3 2 30 30 H 1.08992 * 109.60018 * 294.87000 * 6 5 3 31 31 H 1.09002 * 109.58066 * 174.43834 * 6 5 3 32 32 H 1.08999 * 109.47030 * 300.00067 * 10 8 7 33 33 H 1.09000 * 109.46873 * 60.00367 * 10 8 7 34 34 H 0.96999 * 119.99863 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.58710 * 293.82617 * 20 7 6 36 36 H 1.09000 * 109.70372 * 173.46529 * 20 7 6 37 37 H 1.08994 * 109.50197 * 301.33300 * 21 3 2 38 38 H 1.09003 * 109.50095 * 61.43307 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6618 2.0812 1.2211 5 6 1.4291 2.1992 -1.1817 6 6 1.9144 3.6521 -1.1583 7 7 3.3834 3.6593 -1.1320 8 6 4.0832 4.3596 -2.0465 9 8 5.2957 4.3572 -2.0143 10 6 3.3592 5.1458 -3.1090 11 16 4.5658 5.9711 -4.1763 12 6 3.4766 6.7915 -5.2921 13 1 2.4077 6.6871 -5.1782 14 6 3.9922 7.5730 -6.3168 15 7 5.2950 7.7007 -6.4553 16 14 2.8374 8.4422 -7.5001 17 1 1.4311 8.1391 -7.1318 18 1 3.0633 9.9080 -7.4251 19 1 3.0999 7.9711 -8.8837 20 6 4.0751 2.8882 -0.0900 21 6 3.5653 1.4440 -0.1250 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 0.7066 2.1162 1.3671 28 1 1.7377 1.7274 -2.1146 29 1 0.3420 2.1778 -1.1046 30 1 1.5305 4.1516 -0.2689 31 1 1.5624 4.1692 -2.0510 32 1 2.7468 4.4706 -3.7066 33 1 2.7214 5.8930 -2.6368 34 1 5.6553 8.2465 -7.1716 35 1 3.8673 3.3254 0.8867 36 1 5.1492 2.9012 -0.2752 37 1 3.9989 0.8850 0.7041 38 1 3.8535 0.9793 -1.0680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408230400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -97.108798 kcal Electronic energy + Delta-G solvation = -19360.394712 eV Core-core repulsion = 16328.632326 eV Total energy + Delta-G solvation = -3031.762387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33232 -38.50612 -35.42767 -33.31884 -32.42020 -31.90662 -30.42489 -28.90770 -25.64569 -25.27952 -23.56317 -22.15284 -20.55369 -19.08449 -17.70934 -16.78065 -16.71459 -15.56956 -15.42739 -15.10620 -14.79813 -14.73608 -14.49738 -13.93266 -13.77469 -13.19912 -12.92427 -12.78487 -12.57370 -12.31581 -12.12401 -11.95885 -11.75116 -11.35508 -11.34709 -11.25699 -11.06642 -11.00152 -10.74729 -10.43059 -10.04298 -9.77653 -9.28884 -9.06598 -8.42454 -8.20036 -6.48615 -6.20768 -3.91081 2.99248 3.10683 3.21881 3.27288 3.31835 3.63317 3.96999 4.21037 4.37416 4.46160 4.53471 4.79569 4.88745 5.00008 5.13872 5.14387 5.17905 5.23310 5.34404 5.44259 5.53898 5.59683 5.63095 5.67733 5.72233 5.75117 5.87740 5.89253 5.91451 6.01307 6.13426 6.18969 6.72709 7.41767 7.60356 7.65087 8.36189 8.62345 9.24541 10.86739 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032296 B = 0.003969 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.769763 B = 7053.453519 C = 7626.519263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 C 0.135 3.865 4 O -0.554 6.554 5 C -0.164 4.164 6 C 0.114 3.886 7 N -0.618 5.618 8 C 0.534 3.466 9 O -0.519 6.519 10 C -0.150 4.150 11 S -0.062 6.062 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.118 3.882 21 C -0.119 4.119 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.372 0.628 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.268 0.732 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.520 -14.423 13.621 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.188 4.188 3 C 0.094 3.906 4 O -0.360 6.360 5 C -0.202 4.202 6 C -0.010 4.010 7 N -0.354 5.354 8 C 0.322 3.678 9 O -0.394 6.394 10 C -0.300 4.300 11 S 0.165 5.835 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.005 4.005 21 C -0.157 4.157 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.219 0.781 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.910 -14.276 13.619 21.649 hybrid contribution -2.897 0.392 -0.901 3.059 sum -11.807 -13.884 12.717 22.224 Atomic orbital electron populations 1.21876 0.95653 1.02194 1.01932 1.22205 0.96444 0.97087 1.03035 1.21165 0.94974 0.90531 0.83922 1.86570 1.28059 1.81180 1.40212 1.22693 1.01001 0.96862 0.99669 1.21602 0.80178 0.96190 1.03027 1.48073 1.06423 1.50070 1.30828 1.20328 0.87690 0.78604 0.81218 1.90686 1.13703 1.62122 1.72849 1.23547 1.04803 1.01956 0.99723 1.85411 1.07758 1.59309 1.31050 1.22903 0.94433 1.34706 1.16222 0.90930 1.24992 0.95568 0.95941 0.97096 1.70033 1.10910 1.37804 1.31514 0.86119 0.80227 0.79089 0.80057 1.19635 1.20566 1.20575 1.21405 0.98262 0.89864 0.90943 1.21917 0.92894 0.97994 1.02912 0.92413 0.91994 0.92674 0.91111 0.90976 0.78087 0.90376 0.90180 0.91124 0.89389 0.89392 0.89342 0.92254 0.91149 0.89071 0.90294 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.21 37.16 0.34 -0.56 16 2 C -0.15 -1.06 5.23 -26.73 -0.14 -1.20 16 3 C 0.13 1.18 0.73 -90.58 -0.07 1.11 16 4 O -0.55 -4.93 11.70 -35.23 -0.41 -5.35 16 5 C -0.16 -1.47 4.64 -26.61 -0.12 -1.60 16 6 C 0.11 1.31 6.10 -3.71 -0.02 1.29 16 7 N -0.62 -9.28 2.97 -172.76 -0.51 -9.80 16 8 C 0.53 10.55 7.72 -10.99 -0.08 10.46 16 9 O -0.52 -12.25 15.28 5.55 0.08 -12.16 16 10 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 11 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 12 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 13 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 16 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.12 1.58 6.19 -3.71 -0.02 1.56 16 21 C -0.12 -1.25 5.11 -26.61 -0.14 -1.38 16 22 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.35 6.31 -51.93 -0.33 0.02 16 24 H 0.05 0.26 6.89 -51.93 -0.36 -0.10 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.37 2.11 7.52 45.56 0.34 2.45 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.55 6.27 -51.93 -0.33 0.22 16 30 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 31 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 32 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 33 H 0.09 1.71 7.94 -51.92 -0.41 1.30 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 0.92 7.81 -51.93 -0.41 0.52 16 36 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -34.48 315.19 -7.53 -42.01 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.04 Total: -0.10 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.22 Total: -35.36 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.33 Total: -17.51 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.48 -7.53 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408230400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.102 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds