Wall clock time and date at job start Mon Mar 30 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48496 * 109.47252 * 269.99832 * 3 2 1 5 5 H 1.48501 * 109.46990 * 30.00106 * 3 2 1 6 6 H 1.48500 * 109.47090 * 149.99728 * 3 2 1 7 7 C 1.37872 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00712 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47045 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46708 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00158 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99836 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00045 * 179.97438 * 13 11 10 15 15 H 1.08994 * 110.06701 * 324.92210 * 14 13 11 16 16 C 1.53486 * 110.08622 * 86.45100 * 14 13 11 17 17 C 1.50947 * 105.33669 * 119.21234 * 16 14 13 18 18 O 1.21253 * 125.94807 * 179.97438 * 17 16 14 19 19 C 1.47225 * 108.10136 * 359.97438 * 17 16 14 20 20 C 1.40384 * 130.01068 * 180.02562 * 19 17 16 21 21 C 1.37692 * 120.06413 * 179.97438 * 20 19 17 22 22 C 1.38422 * 120.16483 * 359.97438 * 21 20 19 23 23 C 1.38273 * 120.19459 * 0.06015 * 22 21 20 24 24 C 1.38217 * 120.33572 * 359.91800 * 23 22 21 25 25 H 0.97005 * 120.00363 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46829 * 59.99723 * 9 7 2 27 27 H 1.09003 * 109.47002 * 300.00076 * 9 7 2 28 28 H 1.08999 * 109.47579 * 60.00126 * 10 9 7 29 29 H 1.08995 * 109.47290 * 299.99521 * 10 9 7 30 30 H 0.97003 * 119.99803 * 359.97438 * 13 11 10 31 31 H 1.09005 * 110.26973 * 238.17741 * 16 14 13 32 32 H 1.09002 * 110.27474 * 0.24478 * 16 14 13 33 33 H 1.08004 * 119.96806 * 359.95703 * 20 19 17 34 34 H 1.07999 * 119.91423 * 180.02562 * 21 20 19 35 35 H 1.07993 * 119.89952 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.83224 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4918 -4.9671 0.0012 12 8 0.2791 -4.9671 0.0003 13 7 2.1658 -6.1343 0.0026 14 6 1.4334 -7.4031 0.0026 15 1 0.5201 -7.3077 0.5899 16 6 1.0941 -7.8158 -1.4363 17 6 1.7835 -9.1425 -1.6441 18 8 1.7603 -9.8055 -2.6590 19 6 2.4888 -9.4914 -0.3998 20 6 3.2699 -10.6160 -0.0899 21 6 3.8430 -10.7356 1.1564 22 6 3.6519 -9.7482 2.1075 23 6 2.8837 -8.6372 1.8119 24 6 2.3021 -8.5022 0.5653 25 1 -0.4851 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8713 -3.6039 0.8922 29 1 2.8726 -3.6046 -0.8877 30 1 3.1358 -6.1343 0.0037 31 1 0.0162 -7.9280 -1.5528 32 1 1.4761 -7.0773 -2.1411 33 1 3.4211 -11.3882 -0.8296 34 1 4.4437 -11.6016 1.3920 35 1 4.1037 -9.8463 3.0835 36 1 2.7381 -7.8705 2.5585 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416186597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:10 Heat of formation + Delta-G solvation = -56.033026 kcal Electronic energy + Delta-G solvation = -19739.655458 eV Core-core repulsion = 16574.230299 eV Total energy + Delta-G solvation = -3165.425159 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05548 -39.06688 -38.36098 -35.83682 -33.48492 -32.74644 -31.33473 -30.83965 -29.29966 -26.43009 -25.01717 -23.25921 -22.02978 -21.08750 -20.26466 -19.71884 -17.31614 -16.88071 -16.45757 -16.09593 -15.76586 -15.48380 -15.00026 -14.76443 -14.41890 -14.26852 -14.22008 -13.30840 -13.25379 -13.03107 -12.94253 -12.29411 -12.14146 -11.98851 -11.78799 -11.31612 -11.19497 -10.94787 -10.61735 -10.00190 -9.99581 -9.72811 -9.50189 -9.34879 -9.18365 -9.04771 -8.90035 -8.34243 -5.98215 -4.02803 0.27498 0.91088 2.11944 3.11547 3.19745 3.32187 3.38503 3.40787 3.58602 3.70673 4.09676 4.38605 4.45937 4.56452 4.69029 4.86538 4.95637 5.06380 5.16134 5.34044 5.36926 5.45114 5.55675 5.69786 5.77630 5.94734 6.01891 6.04583 6.17405 6.19151 6.45572 6.54779 6.84177 7.22723 7.71378 7.75264 7.82599 8.04164 8.35418 8.65845 9.05524 9.61037 11.12643 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031214 B = 0.003385 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.827182 B = 8270.824725 C = 8733.848753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.512 3.488 12 O -0.529 6.529 13 N -0.736 5.736 14 C 0.185 3.815 15 H 0.113 0.887 16 C -0.183 4.183 17 C 0.410 3.590 18 O -0.443 6.443 19 C -0.180 4.180 20 C -0.055 4.055 21 C -0.130 4.130 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.058 4.058 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.400 0.600 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 -21.408 3.362 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.403 6.403 13 N -0.390 5.390 14 C 0.080 3.920 15 H 0.131 0.869 16 C -0.222 4.222 17 C 0.287 3.713 18 O -0.318 6.318 19 C -0.182 4.182 20 C -0.073 4.073 21 C -0.148 4.148 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.059 4.059 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.235 0.765 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.452 -21.589 2.829 23.013 hybrid contribution 0.968 0.891 0.119 1.321 sum 8.420 -20.698 2.948 22.539 Atomic orbital electron populations 1.69991 1.06054 1.26623 1.50123 1.25019 0.94825 0.99238 0.95271 0.86593 0.79770 0.83507 0.78089 1.20662 1.21222 1.19882 1.21213 0.92933 0.90998 1.51492 0.92599 1.18909 0.93159 0.89348 0.98670 1.21887 1.00771 0.91632 1.02659 1.21680 0.88728 0.85504 0.73999 1.90681 1.14377 1.87413 1.47859 1.46339 1.10121 1.04427 1.78150 1.19887 0.95464 0.82068 0.94573 0.86946 1.22834 1.03755 0.96879 0.98721 1.22547 0.76858 0.86609 0.85277 1.90542 1.54426 1.55402 1.31429 1.21170 1.02632 0.97240 0.97114 1.21177 0.93631 0.95875 0.96621 1.21134 1.00632 0.99704 0.93355 1.21379 0.96352 0.93042 0.99491 1.20718 0.97406 0.98539 0.95615 1.20720 0.96171 0.95303 0.93741 0.92924 0.95774 0.95779 0.90081 0.90104 0.76529 0.86536 0.86543 0.85262 0.85113 0.84993 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.49 5.64 -27.88 -0.16 -2.64 16 11 C 0.51 9.05 7.82 -10.98 -0.09 8.96 16 12 O -0.53 -11.55 15.66 5.56 0.09 -11.47 16 13 N -0.74 -9.33 4.99 -54.55 -0.27 -9.61 16 14 C 0.19 2.15 3.25 -68.69 -0.22 1.93 16 15 H 0.11 1.43 7.61 -51.93 -0.40 1.03 16 16 C -0.18 -2.12 6.64 -27.51 -0.18 -2.30 16 17 C 0.41 4.95 7.77 -30.54 -0.24 4.71 16 18 O -0.44 -6.54 18.02 5.58 0.10 -6.44 16 19 C -0.18 -1.89 6.11 -104.99 -0.64 -2.53 16 20 C -0.05 -0.48 10.11 -38.97 -0.39 -0.88 16 21 C -0.13 -0.91 10.02 -39.71 -0.40 -1.31 16 22 C -0.08 -0.59 10.04 -39.50 -0.40 -0.98 16 23 C -0.10 -0.88 10.03 -39.58 -0.40 -1.28 16 24 C -0.06 -0.58 5.68 -104.04 -0.59 -1.17 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 31 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.12 1.41 7.92 -51.93 -0.41 1.00 16 33 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -34.26 317.81 -8.31 -42.57 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.50 Total: 0.22 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -4.24 Total: -10.10 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.46 Total: -35.96 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.19 Total: -17.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.26 -8.31 -42.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416186597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.463 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds