Wall clock time and date at job start Mon Mar 30 2020 01:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54033 * 291.62070 * 11 10 9 13 13 O 1.42093 * 110.54359 * 68.37403 * 11 10 9 14 14 N 1.65606 * 104.44724 * 180.02562 * 11 10 9 15 15 C 1.46492 * 120.00135 * 64.99830 * 14 11 10 16 16 H 1.09000 * 109.26798 * 334.50382 * 15 14 11 17 17 C 1.52877 * 109.27032 * 93.97540 * 15 14 11 18 18 C 1.53294 * 108.58847 * 65.37163 * 17 15 14 19 19 C 1.52882 * 108.58321 * 74.45020 * 18 17 15 20 20 C 1.52712 * 110.14823 * 305.47736 * 19 18 17 21 21 H 1.09001 * 115.38670 * 231.21546 * 20 19 18 22 22 C 1.53644 * 116.03315 * 90.20171 * 20 19 18 23 23 C 1.52069 * 120.52439 * 21.46783 * 20 19 18 24 24 H 1.08999 * 115.93131 * 209.99308 * 23 20 19 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 0.97001 * 119.99859 * 245.00017 * 14 11 10 31 31 H 1.08994 * 109.61909 * 185.10658 * 17 15 14 32 32 H 1.09004 * 109.61346 * 305.64441 * 17 15 14 33 33 H 1.08994 * 109.62093 * 314.71730 * 18 17 15 34 34 H 1.09003 * 109.61641 * 194.17448 * 18 17 15 35 35 H 1.08997 * 109.35850 * 185.27226 * 19 18 17 36 36 H 1.09003 * 109.24481 * 65.60880 * 19 18 17 37 37 H 1.08999 * 117.53887 * 140.93417 * 22 20 19 38 38 H 1.09003 * 117.53888 * 355.68847 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6639 -5.4201 1.2355 13 8 0.6646 -5.4193 -1.2385 14 7 2.5204 -6.3928 -0.0005 15 6 3.4179 -6.5230 1.1499 16 1 3.4825 -5.5651 1.6660 17 6 2.8600 -7.5751 2.1085 18 6 2.8896 -8.9386 1.4086 19 6 4.3354 -9.4337 1.3671 20 6 5.2329 -8.3827 0.7177 21 1 5.8681 -8.7454 -0.0904 22 6 5.8631 -7.3535 1.6687 23 6 4.8016 -6.9254 0.6638 24 1 5.1697 -6.3505 -0.1859 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 2.6185 -6.9858 -0.7618 31 1 3.4737 -7.6123 3.0085 32 1 1.8333 -7.3216 2.3727 33 1 2.5083 -8.8368 0.3926 34 1 2.2756 -9.6481 1.9633 35 1 4.3847 -10.3572 0.7902 36 1 4.6793 -9.6240 2.3839 37 1 6.8922 -7.0514 1.4741 38 1 5.5750 -7.3952 2.7191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416554961.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:24 Heat of formation + Delta-G solvation = -95.339667 kcal Electronic energy + Delta-G solvation = -19612.348711 eV Core-core repulsion = 16580.663040 eV Total energy + Delta-G solvation = -3031.685671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71792 -38.12253 -36.99310 -35.89405 -35.61388 -33.52575 -33.11634 -29.92414 -27.59430 -25.26552 -23.69096 -23.48164 -22.03267 -20.30217 -19.57789 -19.09721 -18.31569 -17.33140 -17.00350 -16.81995 -16.52188 -15.91477 -15.42575 -15.03894 -14.93219 -14.46240 -14.24965 -13.90675 -13.73263 -13.31323 -13.18153 -13.08006 -12.93538 -12.86961 -12.78295 -12.48669 -12.24744 -12.12693 -11.95655 -11.79066 -11.72746 -11.48877 -11.07413 -10.83091 -10.64582 -10.54938 -10.26215 -8.25943 -6.40023 -0.65876 1.41054 1.42958 1.54058 1.84291 2.38228 2.81516 2.89109 3.07575 3.29680 3.68850 3.77217 3.91229 4.03988 4.07244 4.10560 4.21308 4.30619 4.34903 4.62181 4.70183 4.71436 4.76846 4.86837 5.00745 5.12914 5.15620 5.26654 5.27461 5.28987 5.38001 5.41912 5.44663 5.53986 5.68466 6.06317 6.16863 6.73692 7.30239 8.86421 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.004615 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.072361 B = 6066.142827 C = 6678.007080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.258 1.258 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.589 4.589 11 S 2.620 3.380 12 O -0.993 6.993 13 O -1.002 7.002 14 N -1.099 6.099 15 C 0.178 3.822 16 H 0.087 0.913 17 C -0.145 4.145 18 C -0.120 4.120 19 C -0.087 4.087 20 C -0.141 4.141 21 H 0.113 0.887 22 C -0.169 4.169 23 C -0.160 4.160 24 H 0.111 0.889 25 H 0.267 0.733 26 H 0.007 0.993 27 H 0.005 0.995 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.423 0.577 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.810 -17.749 2.901 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.182 1.182 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.094 0.906 9 C -0.019 4.019 10 C -0.721 4.721 11 S 2.716 3.284 12 O -0.983 6.983 13 O -0.992 6.992 14 N -0.859 5.859 15 C 0.072 3.928 16 H 0.105 0.895 17 C -0.184 4.184 18 C -0.158 4.158 19 C -0.124 4.124 20 C -0.159 4.159 21 H 0.131 0.869 22 C -0.206 4.206 23 C -0.179 4.179 24 H 0.129 0.871 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.260 0.740 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.692 -17.726 3.051 22.014 hybrid contribution 0.361 1.189 -0.410 1.309 sum 13.052 -16.537 2.641 21.233 Atomic orbital electron populations 1.70106 1.08101 1.28322 1.50896 1.26124 0.95845 1.03896 0.94359 0.85306 0.78624 0.77623 0.78659 1.19530 1.18161 1.20874 1.21520 0.93976 0.90793 1.51513 0.90613 1.18820 0.93615 0.93132 0.96324 1.30353 1.12817 1.16710 1.12237 1.04470 0.74721 0.76405 0.72759 1.93504 1.72672 1.85307 1.46775 1.93497 1.73195 1.85842 1.46658 1.55388 1.51956 1.50165 1.28402 1.20128 0.87770 0.99681 0.85236 0.89549 1.22178 1.01780 0.95815 0.98659 1.21545 0.97445 0.95921 1.00856 1.21068 0.93147 0.97142 1.01024 1.22326 1.01893 0.89822 1.01886 0.86926 1.23241 0.97569 1.03321 0.96508 1.21987 0.94099 0.98617 1.03226 0.87051 0.92398 0.97471 0.97653 0.84021 0.84099 0.74029 0.89425 0.92230 0.92156 0.91410 0.90577 0.90828 0.87575 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.05 4.98 29.85 0.15 1.20 16 10 C -0.59 -22.19 5.89 71.98 0.42 -21.77 16 11 S 2.62 93.27 5.38 -56.49 -0.30 92.97 16 12 O -0.99 -41.17 16.91 -127.65 -2.16 -43.33 16 13 O -1.00 -42.28 18.08 -127.65 -2.31 -44.59 16 14 N -1.10 -27.07 4.76 -170.85 -0.81 -27.89 16 15 C 0.18 3.83 2.79 44.65 0.12 3.95 16 16 H 0.09 1.86 7.13 -2.39 -0.02 1.85 16 17 C -0.15 -3.07 5.35 30.65 0.16 -2.90 16 18 C -0.12 -2.13 5.90 30.65 0.18 -1.95 16 19 C -0.09 -1.16 5.83 30.46 0.18 -0.98 16 20 C -0.14 -1.92 6.19 -10.98 -0.07 -1.99 16 21 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 22 C -0.17 -2.25 9.66 30.58 0.30 -1.95 16 23 C -0.16 -2.63 5.51 -11.64 -0.06 -2.70 16 24 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 29 H 0.14 4.59 7.43 -2.39 -0.02 4.57 16 30 H 0.42 8.79 8.28 -96.74 -0.80 7.99 16 31 H 0.09 1.53 7.11 -2.39 -0.02 1.52 16 32 H 0.06 1.59 7.24 -2.39 -0.02 1.57 16 33 H 0.06 1.15 7.02 -2.39 -0.02 1.13 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.29 7.26 -2.39 -0.02 1.28 16 Total: -1.00 -73.94 316.64 -0.94 -74.88 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.25 Total: 18.04 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 2.08 Total: -58.54 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -0.53 Total: -84.72 kcal Atomic # 8 Polarization: -83.45 SS G_CDS: -4.47 Total: -87.92 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 93.27 SS G_CDS: -0.30 Total: 92.97 kcal Total: -73.94 -0.94 -74.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416554961.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.459 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds