Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.63980 * 2 1 4 4 S 1.65597 * 119.99930 * 37.38455 * 3 2 1 5 5 O 1.42105 * 104.27699 * 176.49626 * 4 3 2 6 6 O 1.42097 * 104.28112 * 304.35733 * 4 3 2 7 7 C 1.81398 * 104.44777 * 60.42987 * 4 3 2 8 8 C 1.53006 * 109.47364 * 172.28776 * 7 4 3 9 9 C 1.50694 * 109.47359 * 179.97438 * 8 7 4 10 10 H 1.07994 * 120.00223 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00142 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99831 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00362 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46747 * 359.97438 * 13 11 9 15 15 H 1.48490 * 109.47401 * 120.00087 * 13 11 9 16 16 H 1.48505 * 109.47113 * 240.00437 * 13 11 9 17 17 C 1.53020 * 109.64213 * 120.63632 * 2 1 3 18 18 C 1.50069 * 110.14300 * 169.12114 * 17 2 1 19 19 C 1.29253 * 124.01953 * 342.73046 * 18 17 2 20 20 C 1.50066 * 124.21744 * 0.74119 * 19 18 17 21 21 C 1.53016 * 110.03693 * 342.64053 * 20 19 18 22 22 H 1.09002 * 109.47490 * 180.42067 * 1 2 3 23 23 H 1.09006 * 109.46929 * 300.41804 * 1 2 3 24 24 H 1.09000 * 109.47379 * 60.41737 * 1 2 3 25 25 H 0.97003 * 120.00178 * 217.38927 * 3 2 1 26 26 H 1.09000 * 109.47316 * 292.28123 * 7 4 3 27 27 H 1.08999 * 109.47499 * 52.28779 * 7 4 3 28 28 H 1.09004 * 109.46849 * 299.99977 * 8 7 4 29 29 H 1.09003 * 109.47295 * 59.99518 * 8 7 4 30 30 H 0.96998 * 119.99973 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.35673 * 289.32336 * 17 2 1 32 32 H 1.09001 * 109.35862 * 49.04946 * 17 2 1 33 33 H 1.07998 * 117.96036 * 162.85344 * 18 17 2 34 34 H 1.08005 * 117.81750 * 180.60124 * 19 18 17 35 35 H 1.09004 * 109.35342 * 222.50483 * 20 19 18 36 36 H 1.08998 * 109.35851 * 102.78723 * 20 19 18 37 37 H 1.09007 * 109.64358 * 169.18960 * 21 20 19 38 38 H 1.08994 * 109.64666 * 289.82330 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 16 1.2274 2.5426 0.8707 5 8 2.0218 3.7091 0.7046 6 8 -0.1079 2.4906 0.3877 7 6 1.3072 1.9573 2.5859 8 6 0.7714 3.0434 3.5209 9 6 0.8370 2.5570 4.9457 10 1 1.2227 1.5719 5.1627 11 6 0.4057 3.3699 5.9723 12 7 -0.0626 4.5703 5.7081 13 14 0.4877 2.7673 7.7385 14 1 1.0502 1.3932 7.7669 15 1 1.3557 3.6745 8.5313 16 1 -0.8782 2.7546 8.3211 17 6 2.0444 -0.7344 1.2400 18 6 3.5211 -0.9742 1.1231 19 6 4.1792 -0.9058 0.0127 20 6 3.5648 -0.5619 -1.3125 21 6 2.0456 -0.7315 -1.2458 22 1 -0.3634 -1.0276 0.0075 23 1 -0.3633 0.5203 0.8863 24 1 -0.3634 0.5073 -0.8937 25 1 2.8140 1.6123 -0.5101 26 1 0.7021 1.0567 2.6910 27 1 2.3416 1.7324 2.8454 28 1 1.3764 3.9441 3.4158 29 1 -0.2631 3.2684 3.2614 30 1 -0.3664 5.1421 6.4304 31 1 1.8453 -0.1311 2.1257 32 1 1.5310 -1.6916 1.3319 33 1 4.0668 -1.2209 2.0219 34 1 5.2399 -1.1071 0.0423 35 1 3.9687 -1.2221 -2.0801 36 1 3.8024 0.4718 -1.5636 37 1 1.5894 -0.3020 -2.1379 38 1 1.7977 -1.7907 -1.1776 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416560918.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = -93.014593 kcal Electronic energy + Delta-G solvation = -20206.881782 eV Core-core repulsion = 17175.296933 eV Total energy + Delta-G solvation = -3031.584849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52383 -38.15346 -36.98995 -35.92503 -34.95996 -33.24712 -31.70413 -31.43954 -27.64701 -27.49127 -24.29314 -23.37469 -22.00960 -20.32164 -19.13898 -18.81655 -18.32079 -17.17189 -16.86458 -16.70360 -16.54043 -15.60063 -15.28806 -15.17221 -14.90589 -14.44839 -14.02627 -13.86821 -13.70200 -13.41278 -13.21369 -13.17645 -13.12590 -12.94408 -12.75416 -12.65708 -12.26232 -12.23429 -12.07913 -12.04917 -11.73927 -11.51032 -11.06461 -11.02758 -10.65120 -10.30793 -9.76589 -8.25646 -6.39385 -0.63295 1.41060 1.41550 1.51720 1.54820 1.86802 2.38149 2.80857 3.08079 3.31234 3.61858 3.78001 3.89881 4.00974 4.09959 4.24440 4.30902 4.49921 4.59347 4.62676 4.67001 4.79161 4.88282 4.95168 5.08158 5.12324 5.16357 5.27073 5.29342 5.30945 5.42886 5.50846 5.69186 5.85841 6.06525 6.16001 6.18380 6.74496 7.30834 8.87031 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024151 B = 0.005621 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.081961 B = 4979.772385 C = 5513.787584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.174 3.826 3 N -1.097 6.097 4 S 2.615 3.385 5 O -1.008 7.008 6 O -0.987 6.987 7 C -0.589 4.589 8 C 0.022 3.978 9 C -0.535 4.535 10 H 0.076 0.924 11 C -0.004 4.004 12 N -0.935 5.935 13 Si 0.973 3.027 14 H -0.255 1.255 15 H -0.279 1.279 16 H -0.278 1.278 17 C -0.129 4.129 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.095 4.095 21 C -0.110 4.110 22 H 0.097 0.903 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.420 0.580 26 H 0.144 0.856 27 H 0.140 0.860 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.267 0.733 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.762 -15.627 -12.929 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 N -0.859 5.859 4 S 2.711 3.289 5 O -0.998 6.998 6 O -0.976 6.976 7 C -0.721 4.721 8 C -0.016 4.016 9 C -0.574 4.574 10 H 0.094 0.906 11 C -0.202 4.202 12 N -0.575 5.575 13 Si 0.797 3.203 14 H -0.179 1.179 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.167 4.167 18 C -0.176 4.176 19 C -0.178 4.178 20 C -0.132 4.132 21 C -0.149 4.149 22 H 0.116 0.884 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.258 0.742 26 H 0.162 0.838 27 H 0.158 0.842 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.146 -14.734 -13.163 20.691 hybrid contribution 0.449 0.126 1.349 1.428 sum 6.595 -14.608 -11.814 19.911 Atomic orbital electron populations 1.22601 0.93323 1.04191 1.03683 1.20394 0.93471 0.80065 0.97503 1.55452 1.44507 1.21317 1.64609 1.04576 0.73617 0.73157 0.77504 1.93484 1.70981 1.48817 1.86541 1.93548 1.38687 1.86688 1.78720 1.30576 1.11301 1.10382 1.19855 1.18812 0.95132 0.92315 0.95376 1.21527 1.42485 1.02215 0.91148 0.90551 1.26110 0.94499 0.94910 1.04697 1.70116 1.43175 1.09915 1.34305 0.85271 0.77975 0.78976 0.78066 1.17856 1.20489 1.20358 1.21415 0.94972 1.02305 0.98032 1.21983 0.95659 1.01516 0.98482 1.22122 1.00065 1.01010 0.94652 1.20511 0.94639 1.02172 0.95876 1.21862 0.95777 1.01341 0.95878 0.88388 0.92966 0.91330 0.74194 0.83758 0.84187 0.97699 0.97632 0.92436 0.90503 0.87498 0.87629 0.87111 0.88840 0.90832 0.90264 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.20 7.10 71.98 0.51 -3.68 16 2 C 0.17 3.64 0.77 3.74 0.00 3.64 16 3 N -1.10 -28.13 5.13 -151.66 -0.78 -28.91 16 4 S 2.61 95.67 4.99 -56.49 -0.28 95.39 16 5 O -1.01 -44.35 18.08 -127.65 -2.31 -46.66 16 6 O -0.99 -40.14 14.49 -127.65 -1.85 -41.99 16 7 C -0.59 -22.59 4.18 71.98 0.30 -22.28 16 8 C 0.02 1.18 4.98 29.85 0.15 1.33 16 9 C -0.53 -29.59 9.11 25.60 0.23 -29.35 16 10 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 11 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 12 N -0.94 -57.19 13.29 21.45 0.28 -56.90 16 13 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 C -0.13 -2.57 4.99 29.66 0.15 -2.42 16 18 C -0.16 -2.96 9.68 27.22 0.26 -2.69 16 19 C -0.16 -2.61 9.72 27.22 0.26 -2.35 16 20 C -0.09 -1.32 5.59 29.66 0.17 -1.16 16 21 C -0.11 -1.65 5.08 30.73 0.16 -1.49 16 22 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.47 5.22 -2.38 -0.01 1.45 16 24 H 0.07 1.73 7.71 -2.39 -0.02 1.71 16 25 H 0.42 9.36 6.69 -96.74 -0.65 8.72 16 26 H 0.14 4.83 5.99 -2.39 -0.01 4.82 16 27 H 0.14 4.79 7.83 -2.39 -0.02 4.77 16 28 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.08 1.76 4.18 -2.39 -0.01 1.75 16 32 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.11 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.11 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.07 1.04 6.65 -2.39 -0.02 1.03 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.12 16 38 H 0.10 1.13 8.12 -2.39 -0.02 1.11 16 Total: -1.00 -73.82 306.88 0.16 -73.67 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.41 Total: 20.33 kcal Atomic # 6 Polarization: -62.88 SS G_CDS: 2.66 Total: -60.22 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -0.49 Total: -85.81 kcal Atomic # 8 Polarization: -84.50 SS G_CDS: -4.16 Total: -88.65 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 95.67 SS G_CDS: -0.28 Total: 95.39 kcal Total: -73.82 0.16 -73.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416560918.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.348 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds