Wall clock time and date at job start Mon Mar 30 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99407 * 2 1 4 4 H 1.48497 * 109.47067 * 270.00128 * 3 2 1 5 5 H 1.48495 * 109.46787 * 30.00469 * 3 2 1 6 6 H 1.48494 * 109.46677 * 149.99910 * 3 2 1 7 7 C 1.37871 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00046 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00367 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47642 * 180.02562 * 11 10 9 13 13 C 1.34456 * 125.73756 * 89.99433 * 12 11 10 14 14 C 1.41413 * 106.90367 * 180.02562 * 13 12 11 15 15 C 1.35166 * 106.78960 * 0.02562 * 14 13 12 16 16 O 1.35753 * 125.84079 * 179.97438 * 15 14 13 17 17 C 1.35879 * 117.99355 * 187.04143 * 16 15 14 18 18 C 1.38773 * 120.05376 * 187.50223 * 17 16 15 19 19 C 1.38133 * 119.93746 * 179.79235 * 18 17 16 20 20 C 1.38277 * 120.06032 * 0.45725 * 19 18 17 21 21 C 1.38272 * 120.11661 * 359.79552 * 20 19 18 22 22 C 1.38137 * 120.05954 * 359.97438 * 21 20 19 23 23 O 1.34344 * 108.31124 * 0.24143 * 15 14 13 24 24 H 0.96998 * 120.00763 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46668 * 60.00035 * 9 7 2 26 26 H 1.09003 * 109.46672 * 300.00489 * 9 7 2 27 27 H 1.00900 * 111.00130 * 56.04533 * 10 9 7 28 28 H 1.09002 * 109.47035 * 59.99781 * 11 10 9 29 29 H 1.09000 * 109.46973 * 300.00105 * 11 10 9 30 30 H 1.08002 * 126.54892 * 0.04741 * 13 12 11 31 31 H 1.08000 * 126.60996 * 179.97438 * 14 13 12 32 32 H 1.08001 * 120.03259 * 0.02562 * 18 17 16 33 33 H 1.08005 * 119.96911 * 180.21116 * 19 18 17 34 34 H 1.08000 * 119.94327 * 179.76829 * 20 19 18 35 35 H 1.07997 * 119.97316 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.02537 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 1.5058 -4.9070 -0.0011 12 6 2.5153 -6.0259 -0.0005 13 6 3.0407 -6.6089 1.0912 14 6 3.9381 -7.6022 0.6353 15 6 3.9073 -7.5658 -0.7155 16 8 4.6266 -8.3604 -1.5487 17 6 4.5845 -8.0921 -2.8801 18 6 5.1738 -8.9648 -3.7839 19 6 5.1259 -8.6919 -5.1371 20 6 4.4998 -7.5455 -5.5908 21 6 3.9164 -6.6716 -4.6919 22 6 3.9573 -6.9421 -3.3379 23 8 3.0476 -6.6047 -1.0924 24 1 -0.4851 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6249 -2.5570 0.8897 27 1 2.8408 -3.5485 0.7808 28 1 0.8811 -4.9812 -0.8914 29 1 0.8806 -4.9817 0.8886 30 1 2.8194 -6.3655 2.1199 31 1 4.5339 -8.2622 1.2483 32 1 5.6661 -9.8586 -3.4298 33 1 5.5814 -9.3725 -5.8412 34 1 4.4667 -7.3321 -6.6489 35 1 3.4284 -5.7767 -5.0487 36 1 3.5018 -6.2590 -2.6363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426001022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:14 Heat of formation + Delta-G solvation = 26.502077 kcal Electronic energy + Delta-G solvation = -19722.877250 eV Core-core repulsion = 16561.031082 eV Total energy + Delta-G solvation = -3161.846168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.81567 -40.24437 -37.85096 -35.55919 -33.24569 -32.53723 -31.21024 -30.44941 -29.38740 -26.72535 -24.48316 -23.20436 -22.64675 -21.62863 -21.44207 -20.65187 -18.89155 -17.31799 -16.83259 -16.50413 -16.12193 -15.40714 -14.92330 -14.61089 -14.56441 -14.15947 -13.87118 -13.65065 -13.25446 -13.19623 -13.14843 -12.70198 -12.38390 -12.07842 -11.58994 -11.41209 -11.22713 -10.93946 -10.78299 -10.71795 -10.05525 -9.86643 -9.29438 -9.17425 -8.93035 -8.53534 -7.81238 -7.44115 -6.08346 -4.10751 1.05161 1.16965 1.85697 2.25965 2.67170 3.06217 3.30222 3.36052 3.40059 3.60864 4.39735 4.65496 4.75186 4.91535 4.95064 5.09023 5.17623 5.22638 5.27804 5.36484 5.41019 5.65547 5.79657 5.85034 5.88595 5.89303 6.04252 6.15182 6.23246 6.36143 6.57523 6.73149 6.99195 7.11023 7.30209 7.39462 7.69920 8.03188 8.25279 8.47801 8.97739 9.54486 11.02644 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003795 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.416527 B = 7375.776094 C = 8335.325333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.686 5.686 11 C 0.133 3.867 12 C 0.006 3.994 13 C -0.190 4.190 14 C -0.205 4.205 15 C 0.153 3.847 16 O -0.197 6.197 17 C 0.093 3.907 18 C -0.138 4.138 19 C -0.092 4.092 20 C -0.145 4.145 21 C -0.083 4.083 22 C -0.187 4.187 23 O -0.179 6.179 24 H 0.262 0.738 25 H 0.031 0.969 26 H -0.009 1.009 27 H 0.334 0.666 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -18.002 -5.409 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.318 5.318 11 C 0.003 3.997 12 C -0.042 4.042 13 C -0.210 4.210 14 C -0.225 4.225 15 C 0.062 3.938 16 O -0.108 6.108 17 C 0.050 3.950 18 C -0.157 4.157 19 C -0.110 4.110 20 C -0.164 4.164 21 C -0.101 4.101 22 C -0.204 4.204 23 O -0.080 6.080 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.008 0.992 27 H 0.151 0.849 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.610 -17.944 -6.308 20.486 hybrid contribution 0.135 0.868 0.890 1.251 sum 7.745 -17.076 -5.418 19.517 Atomic orbital electron populations 1.69953 1.06080 1.26936 1.50702 1.24981 0.94894 0.99407 0.95203 0.86459 0.79691 0.82848 0.78191 1.20565 1.21251 1.19793 1.21148 0.93588 0.90046 1.50667 0.91860 1.19606 0.90493 0.86992 0.96122 1.60723 1.21294 1.00194 1.49596 1.20413 0.91073 0.86042 1.02155 1.22715 1.00222 0.98270 0.83029 1.21378 1.00786 0.99077 0.99717 1.20801 1.06861 1.05310 0.89548 1.20200 0.93691 0.91025 0.88925 1.84681 1.61245 1.49221 1.15610 1.19181 0.99351 0.95527 0.80908 1.20413 1.03473 0.99840 0.91960 1.20941 0.98611 0.97321 0.94176 1.21210 0.99874 0.95269 1.00015 1.21142 0.97476 0.99257 0.92260 1.22515 1.02445 0.97093 0.98365 1.84232 1.47507 1.41121 1.35113 0.92815 0.95104 0.99163 0.84874 0.89867 0.92408 0.82742 0.82764 0.84966 0.85099 0.85610 0.85031 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.42 9.32 -34.44 -0.32 -14.74 16 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.19 4.93 5.44 -4.98 -0.03 4.91 16 10 N -0.69 -14.42 6.48 -116.34 -0.75 -15.18 16 11 C 0.13 2.28 6.21 -4.98 -0.03 2.25 16 12 C 0.01 0.10 6.83 -35.64 -0.24 -0.14 16 13 C -0.19 -2.68 10.80 -39.71 -0.43 -3.11 16 14 C -0.21 -2.82 10.94 -39.47 -0.43 -3.25 16 15 C 0.15 2.34 7.70 29.64 0.23 2.56 16 16 O -0.20 -2.87 10.13 -26.23 -0.27 -3.13 16 17 C 0.09 1.29 6.65 -39.19 -0.26 1.03 16 18 C -0.14 -1.54 9.99 -39.42 -0.39 -1.93 16 19 C -0.09 -0.89 10.04 -39.61 -0.40 -1.28 16 20 C -0.15 -1.48 10.04 -39.55 -0.40 -1.88 16 21 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 22 C -0.19 -2.69 8.95 -39.43 -0.35 -3.04 16 23 O -0.18 -2.93 6.65 -18.24 -0.12 -3.05 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 16 27 H 0.33 6.74 8.72 -39.29 -0.34 6.40 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.17 2.67 4.37 -56.02 -0.25 2.42 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -30.48 315.94 -8.58 -39.05 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.36 Total: 5.26 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -3.55 Total: -18.54 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -0.02 Total: -40.82 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.39 Total: -6.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.48 -8.58 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426001022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.555 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds