Wall clock time and date at job start Mon Mar 30 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99407 * 2 1 4 4 H 1.48497 * 109.47067 * 270.00128 * 3 2 1 5 5 H 1.48495 * 109.46787 * 30.00469 * 3 2 1 6 6 H 1.48494 * 109.46677 * 149.99910 * 3 2 1 7 7 C 1.37871 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00046 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00367 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47642 * 180.02562 * 11 10 9 13 13 C 1.34456 * 125.73756 * 89.99433 * 12 11 10 14 14 C 1.41413 * 106.90367 * 180.02562 * 13 12 11 15 15 C 1.35166 * 106.78960 * 0.02562 * 14 13 12 16 16 O 1.35753 * 125.84079 * 179.97438 * 15 14 13 17 17 C 1.35879 * 117.99355 * 187.04143 * 16 15 14 18 18 C 1.38773 * 120.05376 * 187.50223 * 17 16 15 19 19 C 1.38133 * 119.93746 * 179.79235 * 18 17 16 20 20 C 1.38277 * 120.06032 * 0.45725 * 19 18 17 21 21 C 1.38272 * 120.11661 * 359.79552 * 20 19 18 22 22 C 1.38137 * 120.05954 * 359.97438 * 21 20 19 23 23 O 1.34344 * 108.31124 * 0.24143 * 15 14 13 24 24 H 0.96998 * 120.00763 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46668 * 60.00035 * 9 7 2 26 26 H 1.09003 * 109.46672 * 300.00489 * 9 7 2 27 27 H 1.00900 * 111.00130 * 56.04533 * 10 9 7 28 28 H 1.09002 * 109.47035 * 59.99781 * 11 10 9 29 29 H 1.09000 * 109.46973 * 300.00105 * 11 10 9 30 30 H 1.08002 * 126.54892 * 0.04741 * 13 12 11 31 31 H 1.08000 * 126.60996 * 179.97438 * 14 13 12 32 32 H 1.08001 * 120.03259 * 0.02562 * 18 17 16 33 33 H 1.08005 * 119.96911 * 180.21116 * 19 18 17 34 34 H 1.08000 * 119.94327 * 179.76829 * 20 19 18 35 35 H 1.07997 * 119.97316 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.02537 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0001 9 6 1.2513 -2.4991 -0.0005 10 7 2.2059 -3.6156 -0.0005 11 6 1.5058 -4.9070 -0.0011 12 6 2.5153 -6.0259 -0.0005 13 6 3.0407 -6.6089 1.0912 14 6 3.9381 -7.6022 0.6353 15 6 3.9073 -7.5658 -0.7155 16 8 4.6266 -8.3604 -1.5487 17 6 4.5845 -8.0921 -2.8801 18 6 5.1738 -8.9648 -3.7839 19 6 5.1259 -8.6919 -5.1371 20 6 4.4998 -7.5455 -5.5908 21 6 3.9164 -6.6716 -4.6919 22 6 3.9573 -6.9421 -3.3379 23 8 3.0476 -6.6047 -1.0924 24 1 -0.4851 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6249 -2.5570 0.8897 27 1 2.8408 -3.5485 0.7808 28 1 0.8811 -4.9812 -0.8914 29 1 0.8806 -4.9817 0.8886 30 1 2.8194 -6.3655 2.1199 31 1 4.5339 -8.2622 1.2483 32 1 5.6661 -9.8586 -3.4298 33 1 5.5814 -9.3725 -5.8412 34 1 4.4667 -7.3321 -6.6489 35 1 3.4284 -5.7767 -5.0487 36 1 3.5018 -6.2590 -2.6363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426001022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:14 Heat of formation + Delta-G solvation = 8.397360 kcal Electronic energy + Delta-G solvation = -19723.662330 eV Core-core repulsion = 16561.031082 eV Total energy + Delta-G solvation = -3162.631248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.96609 -41.24472 -38.79420 -37.27945 -34.77840 -34.20647 -32.14107 -31.57515 -30.69824 -28.43433 -26.00788 -24.17333 -23.86531 -23.34819 -22.61520 -21.80273 -19.90705 -18.79931 -18.24524 -17.76218 -17.20563 -16.92888 -16.48468 -16.03273 -15.59895 -15.48110 -15.03521 -14.87520 -14.70941 -14.53057 -14.25899 -13.92055 -13.65868 -13.37787 -13.30656 -12.88268 -12.66954 -12.53684 -12.34930 -12.03929 -11.90680 -11.37699 -10.99992 -10.67528 -10.07242 -9.94431 -9.25413 -8.87044 -8.23623 -6.34784 0.09200 0.27761 0.70606 1.17882 1.41744 1.43088 1.53731 1.55716 1.97012 2.39964 2.71208 3.09932 3.55540 3.72137 3.85944 3.90471 3.98486 4.18362 4.23293 4.36085 4.39803 4.40494 4.53958 4.76013 4.84833 4.92966 5.03201 5.05942 5.17403 5.22713 5.35802 5.43867 5.50171 5.58625 5.82500 5.87717 5.97769 6.30732 6.35938 6.62628 6.84311 7.35915 8.87546 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.003795 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.416527 B = 7375.776094 C = 8335.325333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.690 5.690 11 C 0.138 3.862 12 C -0.024 4.024 13 C -0.172 4.172 14 C -0.203 4.203 15 C 0.140 3.860 16 O -0.201 6.201 17 C 0.066 3.934 18 C -0.138 4.138 19 C -0.083 4.083 20 C -0.140 4.140 21 C -0.099 4.099 22 C -0.215 4.215 23 O -0.192 6.192 24 H 0.266 0.734 25 H 0.004 0.996 26 H -0.026 1.026 27 H 0.340 0.660 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.155 0.845 33 H 0.171 0.829 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -19.032 -5.965 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.081 3.919 10 N -0.322 5.322 11 C 0.010 3.990 12 C -0.072 4.072 13 C -0.192 4.192 14 C -0.222 4.222 15 C 0.049 3.951 16 O -0.112 6.112 17 C 0.023 3.977 18 C -0.156 4.156 19 C -0.101 4.101 20 C -0.158 4.158 21 C -0.118 4.118 22 C -0.233 4.233 23 O -0.094 6.094 24 H 0.075 0.925 25 H 0.022 0.978 26 H -0.009 1.009 27 H 0.158 0.842 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.197 0.803 31 H 0.201 0.799 32 H 0.173 0.827 33 H 0.189 0.811 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.395 -18.996 -6.862 22.276 hybrid contribution -0.391 1.070 0.973 1.498 sum 9.004 -17.926 -5.889 20.907 Atomic orbital electron populations 1.70069 1.07671 1.28097 1.51317 1.25902 0.95788 1.03224 0.94512 0.85351 0.78561 0.78093 0.78412 1.20007 1.20506 1.18826 1.21505 0.93769 0.91408 1.50908 0.91962 1.19241 0.90489 0.88164 0.93959 1.60546 1.20812 1.00739 1.50070 1.20305 0.91448 0.84774 1.02514 1.22494 1.01616 0.99196 0.83892 1.21718 0.99334 0.97927 1.00231 1.21202 1.06611 1.05272 0.89133 1.20625 0.93696 0.91003 0.89818 1.84648 1.61245 1.49164 1.16139 1.19515 1.00867 0.96365 0.80932 1.20825 1.02618 0.99898 0.92288 1.21447 0.97226 0.97316 0.94102 1.21601 0.98373 0.94684 1.01131 1.21327 0.98295 1.00246 0.91886 1.22429 1.04091 0.97685 0.99065 1.84276 1.47993 1.41676 1.35458 0.92509 0.97775 1.00864 0.84222 0.90710 0.90769 0.80350 0.79941 0.82731 0.81112 0.82591 0.84744 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 2 C 0.00 0.24 5.46 84.65 0.46 0.71 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.54 -30.58 9.32 25.60 0.24 -30.34 16 8 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.21 11.02 5.44 85.56 0.47 11.48 16 10 N -0.69 -29.85 6.48 -522.00 -3.38 -33.24 16 11 C 0.14 4.92 6.21 85.56 0.53 5.45 16 12 C -0.02 -0.77 6.83 24.82 0.17 -0.61 16 13 C -0.17 -4.68 10.80 22.19 0.24 -4.44 16 14 C -0.20 -5.32 10.94 22.34 0.24 -5.08 16 15 C 0.14 4.31 7.70 67.11 0.52 4.82 16 16 O -0.20 -5.86 10.13 -11.88 -0.12 -5.99 16 17 C 0.07 1.82 6.65 22.52 0.15 1.97 16 18 C -0.14 -2.81 9.99 22.37 0.22 -2.58 16 19 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 20 C -0.14 -2.54 10.04 22.29 0.22 -2.31 16 21 C -0.10 -2.45 10.04 22.25 0.22 -2.22 16 22 C -0.22 -6.45 8.95 22.37 0.20 -6.25 16 23 O -0.19 -6.56 6.65 16.72 0.11 -6.45 16 24 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 26 H -0.03 -1.45 8.14 -2.39 -0.02 -1.47 16 27 H 0.34 13.92 8.72 -89.69 -0.78 13.14 16 28 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.14 4.92 4.37 -58.89 -0.26 4.66 16 Total: -1.00 -67.19 315.94 3.10 -64.08 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.07 Total: 21.31 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 4.11 Total: -30.51 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -3.10 Total: -88.57 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.01 Total: -12.43 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.19 3.10 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426001022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.482 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds