Wall clock time and date at job start Mon Mar 30 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00058 * 2 1 4 4 H 1.09005 * 112.84605 * 338.30845 * 3 2 1 5 5 C 1.53779 * 113.61568 * 109.49814 * 3 2 1 6 6 C 1.53785 * 87.07888 * 89.11946 * 5 3 2 7 7 H 1.08995 * 113.61757 * 140.06740 * 6 5 3 8 8 N 1.46504 * 113.61159 * 270.88557 * 6 5 3 9 9 C 1.34775 * 119.99561 * 254.13282 * 8 6 5 10 10 O 1.21282 * 120.00577 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99768 * 179.97438 * 9 8 6 12 12 S 1.81002 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.76199 * 100.00182 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99949 * 179.97438 * 13 12 11 16 16 N 1.31630 * 119.99849 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00065 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46692 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46740 * 119.99825 * 17 15 13 20 20 H 1.48497 * 109.47025 * 240.00183 * 17 15 13 21 21 C 1.53779 * 87.17363 * 25.47432 * 6 5 3 22 22 C 1.52999 * 113.61577 * 89.07161 * 21 6 5 23 23 C 1.52999 * 113.61678 * 219.97736 * 21 6 5 24 24 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47433 * 300.00319 * 1 2 3 26 26 H 1.09005 * 109.46620 * 60.00152 * 1 2 3 27 27 H 1.09004 * 113.61544 * 334.57217 * 5 3 2 28 28 H 1.09000 * 113.69148 * 203.67496 * 5 3 2 29 29 H 0.96993 * 120.00065 * 74.13541 * 8 6 5 30 30 H 1.09005 * 109.46867 * 60.00428 * 11 9 8 31 31 H 1.09000 * 109.47235 * 300.00468 * 11 9 8 32 32 H 0.97005 * 119.99878 * 179.97438 * 16 15 13 33 33 H 1.09004 * 109.46785 * 60.00129 * 22 21 6 34 34 H 1.08994 * 109.47190 * 179.97438 * 22 21 6 35 35 H 1.08999 * 109.47485 * 300.00651 * 22 21 6 36 36 H 1.09002 * 109.46866 * 59.99924 * 23 21 6 37 37 H 1.08997 * 109.47341 * 179.97438 * 23 21 6 38 38 H 1.09001 * 109.47224 * 300.00453 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3297 2.0718 -0.3713 5 6 2.6905 1.6770 1.3282 6 6 3.9723 1.0482 0.7569 7 1 4.8771 1.6065 0.9970 8 7 4.0974 -0.3848 1.0350 9 6 4.9737 -0.8170 1.9633 10 8 5.6584 -0.0197 2.5687 11 6 5.1020 -2.2909 2.2498 12 16 6.3501 -2.5494 3.5349 13 6 6.2952 -4.3057 3.6660 14 1 5.6187 -4.8727 3.0438 15 6 7.1223 -4.9605 4.5681 16 7 7.9473 -4.2694 5.3260 17 14 7.0636 -6.8224 4.7075 18 1 6.0598 -7.3587 3.7537 19 1 8.4001 -7.3850 4.3874 20 1 6.6848 -7.2033 6.0919 21 6 3.4103 1.3577 -0.6407 22 6 3.7941 2.7437 -1.1626 23 6 3.6609 0.2463 -1.6620 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 2.2883 1.1428 2.1891 28 1 2.7681 2.7513 1.4951 29 1 3.5496 -1.0223 0.5511 30 1 5.4021 -2.8129 1.3411 31 1 4.1428 -2.6794 2.5920 32 1 8.5250 -4.7270 5.9567 33 1 4.8796 2.8210 -1.2241 34 1 3.3630 2.8914 -2.1527 35 1 3.4136 3.5061 -0.4828 36 1 3.1905 -0.6752 -1.3189 37 1 3.2364 0.5343 -2.6238 38 1 4.7338 0.0879 -1.7707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439825658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:31 Heat of formation + Delta-G solvation = -65.731764 kcal Electronic energy + Delta-G solvation = -19208.535648 eV Core-core repulsion = 16178.133872 eV Total energy + Delta-G solvation = -3030.401776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.81830 -38.43320 -36.50669 -33.09079 -32.38557 -30.72524 -29.04521 -27.76368 -26.64305 -25.46569 -24.25184 -22.61722 -20.22214 -18.93709 -17.74468 -16.84119 -16.06887 -15.85845 -15.70279 -15.32107 -14.78711 -14.76393 -14.06967 -13.88748 -13.64736 -13.36038 -13.00294 -12.79739 -12.51765 -12.40403 -12.19601 -12.04735 -11.72945 -11.57801 -11.06541 -11.04056 -10.97108 -10.74551 -10.71208 -10.18477 -9.74885 -9.62806 -9.28781 -9.03561 -8.68530 -8.17290 -6.44531 -6.17741 -3.87422 3.06623 3.18180 3.24420 3.28611 3.33308 3.42894 3.81769 4.24594 4.31690 4.35241 4.72423 4.78287 4.98186 5.00700 5.11993 5.17025 5.17478 5.26333 5.41264 5.44046 5.47489 5.53206 5.65335 5.68016 5.76401 5.82095 5.89907 5.97449 6.01680 6.16507 6.22873 6.24190 6.83927 7.00818 7.64189 7.92037 8.39824 8.75250 9.27766 10.89781 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.003883 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.426911 B = 7208.666388 C = 7611.920558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.071 3.929 4 H 0.072 0.928 5 C -0.177 4.177 6 C 0.141 3.859 7 H 0.100 0.900 8 N -0.712 5.712 9 C 0.533 3.467 10 O -0.521 6.521 11 C -0.152 4.152 12 S -0.061 6.061 13 C -0.534 4.534 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.094 4.094 22 C -0.125 4.125 23 C -0.133 4.133 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.404 0.596 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.267 0.733 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.620 11.665 -14.531 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.284 6.284 3 C 0.012 3.988 4 H 0.090 0.910 5 C -0.216 4.216 6 C 0.034 3.966 7 H 0.118 0.882 8 N -0.366 5.366 9 C 0.320 3.680 10 O -0.396 6.396 11 C -0.302 4.302 12 S 0.166 5.834 13 C -0.682 4.682 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.504 5.504 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.095 4.095 22 C -0.182 4.182 23 C -0.190 4.190 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.240 0.760 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.225 12.798 -13.376 22.751 hybrid contribution -1.407 -2.196 -0.759 2.716 sum -14.631 10.602 -14.135 22.941 Atomic orbital electron populations 1.22785 0.80852 1.02857 0.99826 1.87806 1.19651 1.26449 1.94481 1.23298 0.93946 0.85026 0.96485 0.90974 1.23950 0.97955 1.01452 0.98203 1.21724 0.98174 0.83063 0.93657 0.88169 1.45684 1.42327 1.06833 1.41771 1.20308 0.78607 0.90651 0.78470 1.90683 1.43768 1.56515 1.48637 1.23519 1.06472 0.94195 1.06055 1.85369 1.45958 1.08133 1.43974 1.22925 1.27095 0.91679 1.26519 0.90899 1.24988 0.94557 0.99327 0.94723 1.70035 1.22289 1.35770 1.22268 0.86122 0.78080 0.83244 0.78084 1.19619 1.20589 1.20593 1.22532 0.94521 0.97149 0.95278 1.21546 1.02276 0.93589 1.00835 1.21544 1.01809 0.98204 0.97439 0.89491 0.94022 0.94147 0.90224 0.88599 0.76013 0.89303 0.89286 0.92293 0.91375 0.91976 0.92059 0.91371 0.92762 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.86 101.05 1.10 1.35 16 2 O -0.37 -3.77 7.97 -35.23 -0.28 -4.05 16 3 C 0.07 0.67 3.78 -25.78 -0.10 0.57 16 4 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 5 C -0.18 -1.95 7.36 -25.92 -0.19 -2.14 16 6 C 0.14 1.82 3.75 -67.12 -0.25 1.57 16 7 H 0.10 1.47 7.46 -51.93 -0.39 1.08 16 8 N -0.71 -10.71 4.67 -53.01 -0.25 -10.96 16 9 C 0.53 10.56 7.85 -10.98 -0.09 10.47 16 10 O -0.52 -12.29 15.48 5.56 0.09 -12.20 16 11 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 12 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 13 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 16 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 17 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.09 -0.91 1.34 -153.56 -0.21 -1.12 16 22 C -0.12 -0.96 9.08 37.16 0.34 -0.62 16 23 C -0.13 -1.30 8.44 37.16 0.31 -0.99 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 0.88 7.66 -51.93 -0.40 0.48 16 29 H 0.40 5.43 6.09 -40.82 -0.25 5.18 16 30 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 31 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.41 7.34 -51.93 -0.38 0.03 16 36 H 0.07 0.71 5.66 -51.93 -0.29 0.42 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -34.22 326.00 -6.58 -40.81 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.89 Total: 1.60 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 1.34 Total: -7.10 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.49 Total: -36.76 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.19 Total: -16.25 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.22 -6.58 -40.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439825658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.926 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds