Wall clock time and date at job start Mon Mar 30 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00058 * 2 1 4 4 H 1.09005 * 112.84605 * 338.30845 * 3 2 1 5 5 C 1.53779 * 113.61568 * 109.49814 * 3 2 1 6 6 C 1.53785 * 87.07888 * 89.11946 * 5 3 2 7 7 H 1.08995 * 113.61757 * 140.06740 * 6 5 3 8 8 N 1.46504 * 113.61159 * 270.88557 * 6 5 3 9 9 C 1.34775 * 119.99561 * 254.13282 * 8 6 5 10 10 O 1.21282 * 120.00577 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99768 * 179.97438 * 9 8 6 12 12 S 1.81002 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.76199 * 100.00182 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99949 * 179.97438 * 13 12 11 16 16 N 1.31630 * 119.99849 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00065 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46692 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46740 * 119.99825 * 17 15 13 20 20 H 1.48497 * 109.47025 * 240.00183 * 17 15 13 21 21 C 1.53779 * 87.17363 * 25.47432 * 6 5 3 22 22 C 1.52999 * 113.61577 * 89.07161 * 21 6 5 23 23 C 1.52999 * 113.61678 * 219.97736 * 21 6 5 24 24 H 1.08996 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47433 * 300.00319 * 1 2 3 26 26 H 1.09005 * 109.46620 * 60.00152 * 1 2 3 27 27 H 1.09004 * 113.61544 * 334.57217 * 5 3 2 28 28 H 1.09000 * 113.69148 * 203.67496 * 5 3 2 29 29 H 0.96993 * 120.00065 * 74.13541 * 8 6 5 30 30 H 1.09005 * 109.46867 * 60.00428 * 11 9 8 31 31 H 1.09000 * 109.47235 * 300.00468 * 11 9 8 32 32 H 0.97005 * 119.99878 * 179.97438 * 16 15 13 33 33 H 1.09004 * 109.46785 * 60.00129 * 22 21 6 34 34 H 1.08994 * 109.47190 * 179.97438 * 22 21 6 35 35 H 1.08999 * 109.47485 * 300.00651 * 22 21 6 36 36 H 1.09002 * 109.46866 * 59.99924 * 23 21 6 37 37 H 1.08997 * 109.47341 * 179.97438 * 23 21 6 38 38 H 1.09001 * 109.47224 * 300.00453 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3297 2.0718 -0.3713 5 6 2.6905 1.6770 1.3282 6 6 3.9723 1.0482 0.7569 7 1 4.8771 1.6065 0.9970 8 7 4.0974 -0.3848 1.0350 9 6 4.9737 -0.8170 1.9633 10 8 5.6584 -0.0197 2.5687 11 6 5.1020 -2.2909 2.2498 12 16 6.3501 -2.5494 3.5349 13 6 6.2952 -4.3057 3.6660 14 1 5.6187 -4.8727 3.0438 15 6 7.1223 -4.9605 4.5681 16 7 7.9473 -4.2694 5.3260 17 14 7.0636 -6.8224 4.7075 18 1 6.0598 -7.3587 3.7537 19 1 8.4001 -7.3850 4.3874 20 1 6.6848 -7.2033 6.0919 21 6 3.4103 1.3577 -0.6407 22 6 3.7941 2.7437 -1.1626 23 6 3.6609 0.2463 -1.6620 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 2.2883 1.1428 2.1891 28 1 2.7681 2.7513 1.4951 29 1 3.5496 -1.0223 0.5511 30 1 5.4021 -2.8129 1.3411 31 1 4.1428 -2.6794 2.5920 32 1 8.5250 -4.7270 5.9567 33 1 4.8796 2.8210 -1.2241 34 1 3.3630 2.8914 -2.1527 35 1 3.4136 3.5061 -0.4828 36 1 3.1905 -0.6752 -1.3189 37 1 3.2364 0.5343 -2.6238 38 1 4.7338 0.0879 -1.7707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439825658.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:31 Heat of formation + Delta-G solvation = -89.333964 kcal Electronic energy + Delta-G solvation = -19209.559116 eV Core-core repulsion = 16178.133872 eV Total energy + Delta-G solvation = -3031.425245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.79799 -39.86812 -37.31552 -34.60217 -34.44196 -31.63845 -30.59078 -28.42280 -27.71146 -27.29321 -25.24210 -23.46595 -21.69863 -20.11789 -19.53371 -18.04902 -17.21990 -17.07647 -16.88380 -16.52174 -16.26788 -16.08732 -15.87994 -14.98095 -14.69829 -14.46380 -14.38549 -13.95342 -13.60339 -13.53721 -13.16468 -13.05760 -12.99484 -12.91491 -12.60266 -12.53300 -12.38050 -11.82129 -11.71534 -11.59836 -11.16037 -11.06744 -10.88792 -10.37242 -10.28804 -9.97059 -8.67500 -8.35133 -6.13455 1.26160 1.41438 1.46277 1.58255 1.59749 2.23145 2.27736 2.71512 2.98981 3.31377 3.44146 3.55736 3.82745 3.97785 4.04200 4.24665 4.28781 4.35959 4.47915 4.55654 4.61848 4.63881 4.72187 4.80576 4.86269 4.91912 4.94786 5.02336 5.11695 5.16237 5.39615 5.41599 5.45244 5.61744 6.19744 6.31312 6.56250 7.06055 7.26278 8.74521 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.003883 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.426911 B = 7208.666388 C = 7611.920558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.386 6.386 3 C 0.080 3.920 4 H 0.100 0.900 5 C -0.174 4.174 6 C 0.117 3.883 7 H 0.078 0.922 8 N -0.689 5.689 9 C 0.534 3.466 10 O -0.567 6.567 11 C -0.128 4.128 12 S -0.147 6.147 13 C -0.548 4.548 14 H 0.081 0.919 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 1.000 3.000 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.081 4.081 22 C -0.124 4.124 23 C -0.133 4.133 24 H 0.092 0.908 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.414 0.586 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.272 0.728 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.710 11.282 -16.466 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.305 6.305 3 C 0.022 3.978 4 H 0.118 0.882 5 C -0.213 4.213 6 C 0.011 3.989 7 H 0.096 0.904 8 N -0.342 5.342 9 C 0.320 3.680 10 O -0.445 6.445 11 C -0.279 4.279 12 S 0.080 5.920 13 C -0.695 4.695 14 H 0.100 0.900 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.822 3.178 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.082 4.082 22 C -0.181 4.181 23 C -0.190 4.190 24 H 0.111 0.889 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.134 0.866 29 H 0.252 0.748 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.363 12.429 -15.357 25.027 hybrid contribution -0.827 -1.992 -0.223 2.168 sum -16.191 10.438 -15.580 24.775 Atomic orbital electron populations 1.22946 0.79440 1.03636 1.00777 1.87775 1.21274 1.26995 1.94475 1.23264 0.94198 0.85536 0.94811 0.88187 1.23984 0.96634 1.02254 0.98420 1.22077 0.98422 0.81223 0.97201 0.90408 1.45465 1.40507 1.08407 1.39793 1.20070 0.79125 0.89673 0.79097 1.90668 1.45938 1.57201 1.50725 1.23354 1.04607 0.95842 1.04147 1.85530 1.49571 1.09241 1.47668 1.23243 1.27602 0.91630 1.27057 0.90048 1.26135 0.93745 1.05231 0.93945 1.70193 1.23223 1.38286 1.23079 0.84887 0.78603 0.75810 0.78519 1.18117 1.19793 1.19811 1.22527 0.94182 0.98344 0.93132 1.21581 1.02113 0.92318 1.02104 1.21547 1.01128 0.97937 0.98401 0.88948 0.93848 0.92356 0.92325 0.86579 0.74793 0.87487 0.87678 0.91947 0.92027 0.89955 0.90931 0.92158 0.90783 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.86 113.37 1.23 1.58 16 2 O -0.39 -7.05 7.97 -148.98 -1.19 -8.23 16 3 C 0.08 1.30 3.78 31.21 0.12 1.41 16 4 H 0.10 1.12 7.86 -2.38 -0.02 1.10 16 5 C -0.17 -3.61 7.36 31.12 0.23 -3.38 16 6 C 0.12 2.96 3.75 45.52 0.17 3.13 16 7 H 0.08 2.34 7.46 -2.39 -0.02 2.32 16 8 N -0.69 -20.51 4.67 -440.03 -2.05 -22.57 16 9 C 0.53 21.52 7.85 87.66 0.69 22.21 16 10 O -0.57 -27.79 15.48 -3.04 -0.05 -27.83 16 11 C -0.13 -5.47 6.16 71.24 0.44 -5.03 16 12 S -0.15 -8.46 20.57 -56.49 -1.16 -9.63 16 13 C -0.55 -32.11 9.50 67.96 0.65 -31.46 16 14 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 15 C 0.01 0.82 5.49 84.86 0.47 1.28 16 16 N -0.91 -56.82 13.22 21.65 0.29 -56.54 16 17 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 C -0.08 -1.40 1.34 -51.56 -0.07 -1.47 16 22 C -0.12 -1.56 9.08 71.98 0.65 -0.91 16 23 C -0.13 -2.32 8.44 71.98 0.61 -1.72 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.12 1.91 7.66 -2.39 -0.02 1.89 16 29 H 0.41 10.69 6.09 -92.71 -0.56 10.13 16 30 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 31 H 0.10 4.12 8.14 -2.40 -0.02 4.11 16 32 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.76 7.34 -2.39 -0.02 0.74 16 36 H 0.06 1.15 5.66 -2.39 -0.01 1.13 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -76.41 326.00 3.52 -72.89 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.48 Total: 19.90 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 5.18 Total: -14.35 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -1.77 Total: -79.11 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.23 Total: -36.07 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -76.41 3.52 -72.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439825658.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.446 kcal (2) G-P(sol) polarization free energy of solvation -76.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds