Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 113.99879 * 2 1 4 4 H 1.09001 * 112.85203 * 341.20098 * 3 2 1 5 5 C 1.53786 * 113.60971 * 112.50719 * 3 2 1 6 6 C 1.53786 * 87.07882 * 139.98113 * 5 3 2 7 7 H 1.08996 * 113.68866 * 220.01003 * 6 5 3 8 8 N 1.46497 * 113.61627 * 89.11579 * 6 5 3 9 9 C 1.34773 * 120.00328 * 107.49934 * 8 6 5 10 10 O 1.21287 * 119.99548 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00396 * 179.97438 * 9 8 6 12 12 S 1.81000 * 109.47338 * 179.97438 * 11 9 8 13 13 C 1.76199 * 100.00265 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99604 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00161 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00140 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99698 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99879 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.53777 * 113.61594 * 210.00205 * 3 2 1 22 22 C 1.52998 * 113.61654 * 105.47102 * 21 3 2 23 23 C 1.53005 * 113.68796 * 334.58331 * 21 3 2 24 24 H 1.09005 * 109.46607 * 299.99364 * 1 2 3 25 25 H 1.08999 * 109.47271 * 59.99331 * 1 2 3 26 26 H 1.08999 * 109.46701 * 180.02562 * 1 2 3 27 27 H 1.08993 * 113.61439 * 25.43610 * 5 3 2 28 28 H 1.08999 * 113.61003 * 254.52636 * 5 3 2 29 29 H 0.97008 * 119.99878 * 287.50423 * 8 6 5 30 30 H 1.09004 * 109.47077 * 60.00506 * 11 9 8 31 31 H 1.08997 * 109.47267 * 300.00260 * 11 9 8 32 32 H 0.97001 * 119.99591 * 359.97438 * 16 15 13 33 33 H 1.09004 * 109.47454 * 157.49784 * 22 21 3 34 34 H 1.09005 * 109.47447 * 277.50214 * 22 21 3 35 35 H 1.09001 * 109.46788 * 37.49830 * 22 21 3 36 36 H 1.08998 * 109.47361 * 322.46059 * 23 21 3 37 37 H 1.08996 * 109.47406 * 82.46790 * 23 21 3 38 38 H 1.09002 * 109.46755 * 202.45984 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7536 1.6487 1.3018 6 6 3.8228 2.3181 0.4222 7 1 4.8432 2.1407 0.7620 8 7 3.5534 3.7309 0.1437 9 6 4.2936 4.6879 0.7375 10 8 5.1831 4.3794 1.5022 11 6 4.0168 6.1412 0.4506 12 16 5.1687 7.1721 1.3921 13 6 4.6345 8.7719 0.8824 14 1 3.8166 8.8709 0.1840 15 6 5.2655 9.9047 1.3774 16 7 6.2633 9.7839 2.2274 17 14 4.6986 11.6008 0.8375 18 1 3.2746 11.7899 1.2139 19 1 4.8420 11.7251 -0.6354 20 1 5.5282 12.6358 1.5051 21 6 3.3755 1.3720 -0.7045 22 6 3.3234 2.0390 -2.0805 23 6 4.1255 0.0384 -0.7189 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1168 0.7739 1.8409 28 1 2.2142 2.3475 1.9412 29 1 2.8421 3.9776 -0.4681 30 1 2.9941 6.3807 0.7420 31 1 4.1453 6.3321 -0.6148 32 1 6.5574 8.9032 2.5080 33 1 4.3142 2.4107 -2.3419 34 1 3.0001 1.3114 -2.8250 35 1 2.6186 2.8701 -2.0548 36 1 3.9621 -0.4805 0.2256 37 1 3.7573 -0.5768 -1.5399 38 1 5.1915 0.2225 -0.8527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439825660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = -73.215257 kcal Electronic energy + Delta-G solvation = -18995.527736 eV Core-core repulsion = 15964.801451 eV Total energy + Delta-G solvation = -3030.726285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.89109 -38.67836 -36.70080 -33.26115 -32.54089 -30.82896 -29.27148 -27.58826 -27.08634 -24.90870 -24.08477 -22.76810 -20.51655 -19.00932 -18.28923 -17.09693 -16.41722 -16.05265 -15.65967 -15.45961 -14.97091 -14.56739 -13.91188 -13.85594 -13.63808 -13.46509 -13.11703 -13.01282 -12.46319 -12.41163 -12.31786 -12.19011 -11.88106 -11.79376 -11.63821 -11.16961 -10.93307 -10.89253 -10.41567 -10.18456 -9.61549 -9.59955 -9.53542 -9.03910 -8.94064 -8.24087 -6.68781 -6.63579 -4.01641 2.86407 2.93812 3.33474 3.36840 3.48026 3.54661 3.58452 4.10167 4.23779 4.26604 4.56998 4.63417 4.91452 4.98087 5.01144 5.08664 5.11409 5.21103 5.33710 5.38803 5.44792 5.46646 5.51664 5.62836 5.72806 5.73910 5.77066 5.78946 5.92304 5.98569 6.07274 6.15089 6.57544 6.95363 7.58651 7.89989 8.48384 8.48838 9.25624 10.80385 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037083 B = 0.003450 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.872193 B = 8113.268252 C = 8303.765750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.069 3.931 4 H 0.085 0.915 5 C -0.167 4.167 6 C 0.133 3.867 7 H 0.110 0.890 8 N -0.720 5.720 9 C 0.533 3.467 10 O -0.515 6.515 11 C -0.131 4.131 12 S -0.114 6.114 13 C -0.609 4.609 14 H 0.065 0.935 15 C 0.035 3.965 16 N -0.883 5.883 17 Si 1.084 2.916 18 H -0.285 1.285 19 H -0.285 1.285 20 H -0.278 1.278 21 C -0.088 4.088 22 C -0.138 4.138 23 C -0.116 4.116 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.397 0.603 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.278 0.722 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 -18.680 -8.057 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.011 3.989 4 H 0.103 0.897 5 C -0.206 4.206 6 C 0.026 3.974 7 H 0.128 0.872 8 N -0.373 5.373 9 C 0.320 3.680 10 O -0.388 6.388 11 C -0.282 4.282 12 S 0.112 5.888 13 C -0.757 4.757 14 H 0.084 0.916 15 C -0.175 4.175 16 N -0.518 5.518 17 Si 0.910 3.090 18 H -0.211 1.211 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.090 4.090 22 C -0.195 4.195 23 C -0.174 4.174 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.232 0.768 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.517 -17.736 -6.567 21.172 hybrid contribution -2.189 -0.820 -1.487 2.770 sum -11.705 -18.556 -8.054 23.371 Atomic orbital electron populations 1.22782 0.81480 1.02594 0.99902 1.87936 1.19268 1.27269 1.94550 1.23982 0.93297 0.85073 0.96550 0.89677 1.23947 0.98199 1.01218 0.97279 1.21702 1.00206 0.80196 0.95268 0.87234 1.45714 1.37853 1.04830 1.48940 1.20304 0.81028 0.87106 0.79612 1.90705 1.30725 1.82913 1.34498 1.23318 1.05609 0.93897 1.05414 1.84832 1.44081 1.00564 1.59329 1.23706 1.24796 0.91661 1.35508 0.91624 1.26059 0.93918 1.03535 0.94003 1.70803 1.24332 1.27787 1.28842 0.83329 0.75836 0.73829 0.75998 1.21145 1.21127 1.20262 1.22561 0.94891 0.96565 0.94933 1.21715 1.02432 1.00006 0.95353 1.21383 0.99073 0.94108 1.02825 0.94082 0.94150 0.89802 0.88347 0.90709 0.76781 0.88984 0.88912 0.90971 0.91647 0.92140 0.92736 0.91724 0.91921 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.37 -3.66 9.81 -35.23 -0.35 -4.01 16 3 C 0.07 0.65 3.60 -25.92 -0.09 0.56 16 4 H 0.09 0.72 7.69 -51.93 -0.40 0.33 16 5 C -0.17 -1.82 7.36 -25.91 -0.19 -2.02 16 6 C 0.13 1.60 3.78 -67.12 -0.25 1.35 16 7 H 0.11 1.55 7.42 -51.93 -0.39 1.16 16 8 N -0.72 -9.49 4.77 -53.02 -0.25 -9.75 16 9 C 0.53 9.80 7.85 -10.99 -0.09 9.72 16 10 O -0.51 -11.55 15.46 5.55 0.09 -11.46 16 11 C -0.13 -2.63 6.16 36.00 0.22 -2.40 16 12 S -0.11 -3.08 19.60 -107.50 -2.11 -5.18 16 13 C -0.61 -17.53 9.50 30.94 0.29 -17.24 16 14 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 15 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 16 N -0.88 -27.53 13.67 55.49 0.76 -26.77 16 17 Si 1.08 24.86 29.92 -169.99 -5.09 19.78 16 18 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.09 -0.85 1.33 -153.70 -0.21 -1.06 16 22 C -0.14 -1.20 8.58 37.16 0.32 -0.88 16 23 C -0.12 -1.06 8.46 37.16 0.31 -0.75 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.10 1.04 7.66 -51.93 -0.40 0.65 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.40 4.15 7.17 -40.82 -0.29 3.86 16 30 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 31 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 32 H 0.28 8.84 7.12 -40.82 -0.29 8.55 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.43 6.63 -51.93 -0.34 0.08 16 36 H 0.06 0.61 7.19 -51.93 -0.37 0.23 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -34.34 327.61 -6.61 -40.94 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.92 Total: 1.99 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 1.32 Total: -10.48 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.51 Total: -36.51 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.26 Total: -15.47 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.11 Total: -5.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.34 -6.61 -40.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439825660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.274 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds