Wall clock time and date at job start Mon Mar 30 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42897 * 113.99879 * 2 1 4 4 H 1.09001 * 112.85203 * 341.20098 * 3 2 1 5 5 C 1.53786 * 113.60971 * 112.50719 * 3 2 1 6 6 C 1.53786 * 87.07882 * 139.98113 * 5 3 2 7 7 H 1.08996 * 113.68866 * 220.01003 * 6 5 3 8 8 N 1.46497 * 113.61627 * 89.11579 * 6 5 3 9 9 C 1.34773 * 120.00328 * 107.49934 * 8 6 5 10 10 O 1.21287 * 119.99548 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00396 * 179.97438 * 9 8 6 12 12 S 1.81000 * 109.47338 * 179.97438 * 11 9 8 13 13 C 1.76199 * 100.00265 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99604 * 359.97438 * 13 12 11 15 15 C 1.38796 * 120.00161 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00140 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 59.99698 * 17 15 13 19 19 H 1.48503 * 109.47261 * 299.99879 * 17 15 13 20 20 H 1.48500 * 109.47454 * 179.97438 * 17 15 13 21 21 C 1.53777 * 113.61594 * 210.00205 * 3 2 1 22 22 C 1.52998 * 113.61654 * 105.47102 * 21 3 2 23 23 C 1.53005 * 113.68796 * 334.58331 * 21 3 2 24 24 H 1.09005 * 109.46607 * 299.99364 * 1 2 3 25 25 H 1.08999 * 109.47271 * 59.99331 * 1 2 3 26 26 H 1.08999 * 109.46701 * 180.02562 * 1 2 3 27 27 H 1.08993 * 113.61439 * 25.43610 * 5 3 2 28 28 H 1.08999 * 113.61003 * 254.52636 * 5 3 2 29 29 H 0.97008 * 119.99878 * 287.50423 * 8 6 5 30 30 H 1.09004 * 109.47077 * 60.00506 * 11 9 8 31 31 H 1.08997 * 109.47267 * 300.00260 * 11 9 8 32 32 H 0.97001 * 119.99591 * 359.97438 * 16 15 13 33 33 H 1.09004 * 109.47454 * 157.49784 * 22 21 3 34 34 H 1.09005 * 109.47447 * 277.50214 * 22 21 3 35 35 H 1.09001 * 109.46788 * 37.49830 * 22 21 3 36 36 H 1.08998 * 109.47361 * 322.46059 * 23 21 3 37 37 H 1.08996 * 109.47406 * 82.46790 * 23 21 3 38 38 H 1.09002 * 109.46755 * 202.45984 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 -0.3237 5 6 2.7536 1.6487 1.3018 6 6 3.8228 2.3181 0.4222 7 1 4.8432 2.1407 0.7620 8 7 3.5534 3.7309 0.1437 9 6 4.2936 4.6879 0.7375 10 8 5.1831 4.3794 1.5022 11 6 4.0168 6.1412 0.4506 12 16 5.1687 7.1721 1.3921 13 6 4.6345 8.7719 0.8824 14 1 3.8166 8.8709 0.1840 15 6 5.2655 9.9047 1.3774 16 7 6.2633 9.7839 2.2274 17 14 4.6986 11.6008 0.8375 18 1 3.2746 11.7899 1.2139 19 1 4.8420 11.7251 -0.6354 20 1 5.5282 12.6358 1.5051 21 6 3.3755 1.3720 -0.7045 22 6 3.3234 2.0390 -2.0805 23 6 4.1255 0.0384 -0.7189 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1168 0.7739 1.8409 28 1 2.2142 2.3475 1.9412 29 1 2.8421 3.9776 -0.4681 30 1 2.9941 6.3807 0.7420 31 1 4.1453 6.3321 -0.6148 32 1 6.5574 8.9032 2.5080 33 1 4.3142 2.4107 -2.3419 34 1 3.0001 1.3114 -2.8250 35 1 2.6186 2.8701 -2.0548 36 1 3.9621 -0.4805 0.2256 37 1 3.7573 -0.5768 -1.5399 38 1 5.1915 0.2225 -0.8527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439825660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:35 Heat of formation + Delta-G solvation = -97.104984 kcal Electronic energy + Delta-G solvation = -18996.563672 eV Core-core repulsion = 15964.801451 eV Total energy + Delta-G solvation = -3031.762221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.86777 -39.99902 -37.51523 -34.75662 -34.51957 -31.74236 -30.69320 -28.33613 -27.73394 -27.08292 -25.03982 -23.62460 -21.89619 -20.49634 -19.81480 -18.21827 -17.56408 -17.21913 -16.66981 -16.34721 -16.27221 -16.09905 -15.70287 -15.12317 -14.61734 -14.49593 -14.29607 -14.21478 -13.97253 -13.81728 -13.50162 -13.18975 -13.02516 -12.73420 -12.61499 -12.34327 -11.95611 -11.92250 -11.74571 -11.55891 -11.24537 -11.09590 -11.09087 -10.34775 -10.32859 -10.13513 -8.92561 -8.87432 -6.27963 1.17513 1.46851 1.52386 1.61079 1.81220 2.10009 2.34894 2.84075 3.02403 3.12930 3.26026 3.44669 3.72666 3.79778 3.84599 4.15608 4.20736 4.30602 4.36039 4.48736 4.52024 4.58276 4.67670 4.77854 4.82278 4.87709 4.88231 4.95614 5.05000 5.08449 5.32560 5.36653 5.48721 5.64055 6.14771 6.27983 6.38200 7.06179 7.12370 8.50989 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037083 B = 0.003450 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.872193 B = 8113.268252 C = 8303.765750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.386 6.386 3 C 0.079 3.921 4 H 0.102 0.898 5 C -0.167 4.167 6 C 0.121 3.879 7 H 0.085 0.915 8 N -0.692 5.692 9 C 0.537 3.463 10 O -0.563 6.563 11 C -0.109 4.109 12 S -0.195 6.195 13 C -0.614 4.614 14 H 0.076 0.924 15 C -0.019 4.019 16 N -0.914 5.914 17 Si 1.137 2.863 18 H -0.263 1.263 19 H -0.263 1.263 20 H -0.281 1.281 21 C -0.078 4.078 22 C -0.138 4.138 23 C -0.116 4.116 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.415 0.585 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.955 -19.008 -10.122 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.305 6.305 3 C 0.021 3.979 4 H 0.120 0.880 5 C -0.206 4.206 6 C 0.015 3.985 7 H 0.103 0.897 8 N -0.345 5.345 9 C 0.323 3.677 10 O -0.441 6.441 11 C -0.261 4.261 12 S 0.031 5.969 13 C -0.762 4.762 14 H 0.095 0.905 15 C -0.222 4.222 16 N -0.549 5.549 17 Si 0.954 3.046 18 H -0.188 1.188 19 H -0.187 1.187 20 H -0.206 1.206 21 C -0.079 4.079 22 C -0.195 4.195 23 C -0.173 4.173 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.253 0.747 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.093 -18.122 -8.672 23.449 hybrid contribution -1.468 -0.896 -0.867 1.926 sum -13.561 -19.017 -9.540 25.231 Atomic orbital electron populations 1.22970 0.80036 1.03753 1.00614 1.87917 1.20876 1.27169 1.94512 1.23896 0.93390 0.85668 0.94947 0.88039 1.23930 0.97879 1.00874 0.97921 1.21828 0.99488 0.79604 0.97596 0.89710 1.45396 1.36873 1.04580 1.47662 1.20038 0.81001 0.87183 0.79502 1.90699 1.33076 1.83371 1.36945 1.23221 1.04231 0.93486 1.05140 1.85091 1.47594 1.02376 1.61799 1.24046 1.24732 0.92214 1.35205 0.90546 1.27844 0.93154 1.08093 0.93147 1.70922 1.26283 1.26734 1.30966 0.82716 0.76384 0.68674 0.76800 1.18752 1.18725 1.20634 1.22500 0.94856 0.95883 0.94707 1.21738 1.02341 1.00707 0.94757 1.21387 0.99031 0.93949 1.02970 0.93861 0.92902 0.88571 0.88376 0.91398 0.74665 0.86889 0.86804 0.92858 0.92535 0.90795 0.91518 0.92246 0.90864 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.85 113.37 1.23 1.49 16 2 O -0.39 -6.63 9.81 -148.98 -1.46 -8.09 16 3 C 0.08 1.30 3.60 31.12 0.11 1.42 16 4 H 0.10 1.35 7.69 -2.39 -0.02 1.33 16 5 C -0.17 -3.46 7.36 31.12 0.23 -3.23 16 6 C 0.12 2.81 3.78 45.52 0.17 2.99 16 7 H 0.08 2.45 7.42 -2.39 -0.02 2.43 16 8 N -0.69 -17.10 4.77 -440.05 -2.10 -19.20 16 9 C 0.54 19.43 7.85 87.66 0.69 20.12 16 10 O -0.56 -25.89 15.46 -3.05 -0.05 -25.94 16 11 C -0.11 -4.24 6.16 71.23 0.44 -3.80 16 12 S -0.20 -10.71 19.60 -56.49 -1.11 -11.82 16 13 C -0.61 -35.24 9.50 67.95 0.65 -34.59 16 14 H 0.08 4.08 7.80 -2.91 -0.02 4.06 16 15 C -0.02 -1.12 5.49 84.86 0.47 -0.65 16 16 N -0.91 -58.15 13.67 21.65 0.30 -57.86 16 17 Si 1.14 48.93 29.92 68.60 2.05 50.98 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 C -0.08 -1.36 1.33 -51.66 -0.07 -1.43 16 22 C -0.14 -2.02 8.58 71.98 0.62 -1.40 16 23 C -0.12 -1.95 8.46 71.98 0.61 -1.34 16 24 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 25 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 2.03 7.66 -2.39 -0.02 2.02 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.42 7.39 7.17 -92.70 -0.66 6.72 16 30 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 31 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 32 H 0.26 17.24 7.12 -92.71 -0.66 16.58 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.80 6.63 -2.39 -0.02 0.78 16 36 H 0.06 1.06 7.19 -2.39 -0.02 1.04 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.30 327.61 3.26 -73.04 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.49 Total: 19.31 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 5.14 Total: -20.43 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -1.80 Total: -77.06 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.51 Total: -34.03 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Atomic # 16 Polarization: -10.71 SS G_CDS: -1.11 Total: -11.82 kcal Total: -76.30 3.26 -73.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439825660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.063 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds