Wall clock time and date at job start Mon Mar 30 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 115.54970 * 2 1 4 4 N 1.46500 * 109.47016 * 280.59584 * 3 2 1 5 5 S 1.65596 * 120.00240 * 151.38780 * 4 3 2 6 6 O 1.42106 * 104.27678 * 308.92958 * 5 4 3 7 7 O 1.42095 * 104.28071 * 181.07114 * 5 4 3 8 8 C 1.81402 * 104.45038 * 65.00070 * 5 4 3 9 9 C 1.52994 * 109.47122 * 186.91553 * 8 5 4 10 10 C 1.50696 * 115.55162 * 297.60235 * 9 8 5 11 11 H 1.08004 * 119.99763 * 95.68077 * 10 9 8 12 12 C 1.37877 * 120.00195 * 275.40844 * 10 9 8 13 13 N 1.31516 * 119.99947 * 356.57911 * 12 10 9 14 14 Si 1.86797 * 120.00148 * 176.57249 * 12 10 9 15 15 H 1.48496 * 109.47181 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47525 * 120.00277 * 14 12 10 17 17 H 1.48505 * 109.46958 * 240.00258 * 14 12 10 18 18 C 1.53001 * 117.50052 * 83.27534 * 9 8 5 19 19 C 1.53005 * 117.49755 * 151.93479 * 9 8 5 20 20 C 1.53000 * 117.51952 * 145.69614 * 2 1 3 21 21 C 1.53001 * 117.50159 * 214.32834 * 2 1 3 22 22 H 1.08997 * 109.46845 * 50.95618 * 1 2 3 23 23 H 1.08999 * 109.47024 * 170.95453 * 1 2 3 24 24 H 1.08992 * 109.47565 * 290.95637 * 1 2 3 25 25 H 1.09003 * 109.46992 * 160.59953 * 3 2 1 26 26 H 1.08993 * 109.47054 * 40.59282 * 3 2 1 27 27 H 0.97007 * 120.00249 * 331.38596 * 4 3 2 28 28 H 1.08996 * 109.47286 * 66.91079 * 8 5 4 29 29 H 1.09007 * 109.46632 * 306.91288 * 8 5 4 30 30 H 0.97003 * 119.99812 * 185.00620 * 13 12 10 31 31 H 1.08997 * 117.50093 * 214.99555 * 18 9 8 32 32 H 1.08999 * 117.50022 * 0.02985 * 18 9 8 33 33 H 1.08997 * 117.49954 * 359.97438 * 19 9 8 34 34 H 1.09000 * 117.49460 * 144.97221 * 19 9 8 35 35 H 1.09004 * 117.50049 * 214.97277 * 20 2 1 36 36 H 1.09001 * 117.49715 * 0.02562 * 20 2 1 37 37 H 1.08997 * 117.50005 * 359.97438 * 21 2 1 38 38 H 1.08999 * 117.50013 * 145.00309 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 2.1713 1.9305 -1.3577 5 16 2.1334 3.5702 -1.5863 6 8 1.0555 4.0126 -0.7728 7 8 2.0977 3.7265 -2.9982 8 6 3.7156 4.1568 -0.9208 9 6 3.7315 5.6866 -0.9170 10 6 3.6256 6.3411 -2.2702 11 1 2.6643 6.6685 -2.6380 12 6 4.7566 6.5271 -3.0365 13 7 5.9363 6.1951 -2.5592 14 14 4.6135 7.2505 -4.7528 15 1 3.1874 7.5366 -5.0520 16 1 5.3975 8.5095 -4.8263 17 1 5.1418 6.2798 -5.7448 18 6 3.0691 6.3971 0.2651 19 6 4.5945 6.3815 0.1382 20 6 2.2369 -1.1209 0.7647 21 6 2.2365 -1.1207 -0.7653 22 1 -0.3633 0.6473 -0.7981 23 1 -0.3633 -1.0149 -0.1616 24 1 -0.3634 0.3675 0.9596 25 1 3.2211 1.2901 0.3414 26 1 1.6425 2.0447 0.6686 27 1 2.1813 1.3343 -2.1228 28 1 4.5309 3.7865 -1.5422 29 1 3.8397 3.7896 0.0981 30 1 6.7383 6.3924 -3.0678 31 1 2.5568 7.3379 0.0640 32 1 2.6224 5.7746 1.0404 33 1 5.1506 5.7488 0.8299 34 1 5.0859 7.3118 -0.1467 35 1 3.1721 -0.8749 1.2678 36 1 1.6119 -1.8588 1.2677 37 1 1.6113 -1.8583 -1.2685 38 1 3.1714 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451278384.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:51 Heat of formation + Delta-G solvation = -56.421695 kcal Electronic energy + Delta-G solvation = -19847.830840 eV Core-core repulsion = 16817.832779 eV Total energy + Delta-G solvation = -3029.998062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.41771 -38.55444 -37.89893 -36.77207 -34.98396 -34.08433 -29.87280 -29.49078 -27.50271 -26.94999 -23.24127 -22.95100 -21.52844 -20.32674 -20.12217 -18.44821 -18.26109 -17.37294 -16.86893 -16.55850 -16.13666 -15.68200 -15.60252 -15.33121 -14.90702 -14.08046 -13.80485 -13.73422 -13.62943 -13.17283 -13.09873 -13.04776 -12.89481 -12.87768 -12.86201 -12.44842 -12.28693 -12.20492 -12.16407 -11.88784 -11.49135 -11.05005 -10.97217 -10.66253 -10.53485 -10.40255 -9.85203 -8.20033 -6.36306 -0.48761 1.34936 1.39903 1.50949 2.04410 2.38686 2.91481 3.00355 3.06725 3.37378 3.49978 3.74133 3.83854 3.98320 4.06729 4.12335 4.29634 4.48618 4.53290 4.61408 4.68976 4.82423 4.85852 4.87361 4.99290 5.00134 5.10487 5.11595 5.19424 5.23686 5.34075 5.39315 5.45358 5.63854 5.71012 6.17178 6.22069 6.71185 7.37087 8.86419 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026474 B = 0.005556 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.380379 B = 5038.013351 C = 5291.716114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.153 4.153 3 C 0.141 3.859 4 N -1.114 6.114 5 S 2.626 3.374 6 O -0.993 6.993 7 O -0.998 6.998 8 C -0.552 4.552 9 C 0.004 3.996 10 C -0.533 4.533 11 H 0.047 0.953 12 C 0.042 3.958 13 N -0.892 5.892 14 Si 0.934 3.066 15 H -0.275 1.275 16 H -0.269 1.269 17 H -0.276 1.276 18 C -0.194 4.194 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.175 4.175 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.420 0.580 28 H 0.120 0.880 29 H 0.136 0.864 30 H 0.265 0.735 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 -14.704 7.559 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.016 3.984 4 N -0.874 5.874 5 S 2.723 3.277 6 O -0.983 6.983 7 O -0.988 6.988 8 C -0.684 4.684 9 C 0.002 3.998 10 C -0.571 4.571 11 H 0.065 0.935 12 C -0.161 4.161 13 N -0.529 5.529 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.195 1.195 17 H -0.202 1.202 18 C -0.231 4.231 19 C -0.172 4.172 20 C -0.190 4.190 21 C -0.212 4.212 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.255 0.745 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.966 -14.176 7.239 16.674 hybrid contribution 0.773 0.350 -1.193 1.464 sum -4.193 -13.826 6.046 15.661 Atomic orbital electron populations 1.21323 0.91833 1.02238 1.01978 1.21628 0.95336 0.90042 1.08433 1.21028 1.01097 0.94376 0.81912 1.55477 1.92443 1.25082 1.14425 1.04246 0.77182 0.72844 0.73406 1.93459 1.51948 1.81318 1.71555 1.93478 1.87962 1.85134 1.32224 1.29872 1.20572 1.05986 1.11989 1.18437 1.03729 0.87207 0.90390 1.20764 0.94015 1.41465 1.00827 0.93466 1.25508 0.95141 0.94829 1.00613 1.70047 0.97708 1.45945 1.39179 0.85868 0.78393 0.78587 0.81218 1.19917 1.19452 1.20170 1.23223 0.95874 1.02760 1.01251 1.22456 0.91527 1.01878 1.01322 1.23158 1.02382 0.99313 0.94155 1.23137 1.02537 1.00275 0.95258 0.93637 0.90992 0.91735 0.89871 0.90084 0.74519 0.86134 0.84614 0.92557 0.90204 0.88121 0.89389 0.91621 0.87658 0.87267 0.87860 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.75 71.98 0.70 -1.51 16 2 C -0.15 -2.84 2.24 -52.18 -0.12 -2.96 16 3 C 0.14 3.21 6.10 86.38 0.53 3.73 16 4 N -1.11 -31.54 5.80 -187.49 -1.09 -32.63 16 5 S 2.63 104.43 5.13 -56.49 -0.29 104.14 16 6 O -0.99 -42.92 17.39 -127.65 -2.22 -45.14 16 7 O -1.00 -48.43 17.68 -127.65 -2.26 -50.69 16 8 C -0.55 -22.22 5.94 71.98 0.43 -21.79 16 9 C 0.00 0.22 1.43 -52.93 -0.08 0.14 16 10 C -0.53 -29.84 8.05 25.60 0.21 -29.63 16 11 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 12 C 0.04 2.32 5.43 84.65 0.46 2.78 16 13 N -0.89 -49.52 12.70 21.45 0.27 -49.25 16 14 Si 0.93 44.78 29.54 68.60 2.03 46.81 16 15 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 C -0.19 -8.29 9.96 30.62 0.30 -7.98 16 19 C -0.13 -5.95 9.21 30.62 0.28 -5.66 16 20 C -0.15 -2.11 9.90 30.60 0.30 -1.81 16 21 C -0.17 -2.75 9.66 30.60 0.30 -2.46 16 22 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.53 7.96 -2.39 -0.02 1.51 16 26 H 0.08 1.93 7.50 -2.39 -0.02 1.92 16 27 H 0.42 10.67 8.50 -96.74 -0.82 9.85 16 28 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 29 H 0.14 4.28 8.11 -2.39 -0.02 4.26 16 30 H 0.27 13.94 8.32 -92.71 -0.77 13.16 16 31 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.11 1.30 8.09 -2.39 -0.02 1.28 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.35 332.99 -0.03 -69.37 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.22 Total: 24.52 kcal Atomic # 6 Polarization: -70.46 SS G_CDS: 3.31 Total: -67.15 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -0.82 Total: -81.88 kcal Atomic # 8 Polarization: -91.35 SS G_CDS: -4.48 Total: -95.83 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 104.43 SS G_CDS: -0.29 Total: 104.14 kcal Total: -69.35 -0.03 -69.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451278384.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.952 kcal (2) G-P(sol) polarization free energy of solvation -69.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds