Wall clock time and date at job start Mon Mar 30 2020 01:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46779 * 2 1 4 4 C 1.31009 * 119.99629 * 119.62449 * 3 2 1 5 5 C 1.50701 * 119.99942 * 10.20093 * 4 3 2 6 6 N 1.46503 * 109.46899 * 129.81553 * 5 4 3 7 7 S 1.65592 * 119.99994 * 165.00088 * 6 5 4 8 8 O 1.42102 * 104.27759 * 181.07209 * 7 6 5 9 9 O 1.42105 * 104.27911 * 308.92793 * 7 6 5 10 10 C 1.81401 * 104.45103 * 64.99902 * 7 6 5 11 11 C 1.53004 * 109.47157 * 172.19867 * 10 7 6 12 12 C 1.50696 * 115.54904 * 54.12381 * 11 10 7 13 13 H 1.08005 * 120.00008 * 264.66958 * 12 11 10 14 14 C 1.37878 * 119.99985 * 84.66845 * 12 11 10 15 15 N 1.31513 * 120.00240 * 1.97397 * 14 12 11 16 16 Si 1.86800 * 119.99615 * 181.97640 * 14 12 11 17 17 H 1.48501 * 109.47209 * 90.00340 * 16 14 12 18 18 H 1.48505 * 109.46936 * 210.00043 * 16 14 12 19 19 H 1.48495 * 109.47308 * 329.99596 * 16 14 12 20 20 C 1.52996 * 117.49802 * 268.45100 * 11 10 7 21 21 C 1.52992 * 117.49738 * 199.79382 * 11 10 7 22 22 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47605 * 299.99669 * 1 2 3 24 24 H 1.09000 * 109.47453 * 60.00076 * 1 2 3 25 25 H 1.09001 * 109.47331 * 240.00909 * 2 1 3 26 26 H 1.08994 * 109.47588 * 120.00381 * 2 1 3 27 27 H 1.08004 * 120.00334 * 299.62685 * 3 2 1 28 28 H 1.07999 * 119.99885 * 190.19999 * 4 3 2 29 29 H 1.08997 * 109.47033 * 249.81403 * 5 4 3 30 30 H 1.08993 * 109.46892 * 9.81790 * 5 4 3 31 31 H 0.97003 * 119.99805 * 344.99586 * 6 5 4 32 32 H 1.08998 * 109.46974 * 292.20189 * 10 7 6 33 33 H 1.09002 * 109.47044 * 52.20237 * 10 7 6 34 34 H 0.96993 * 119.99881 * 185.02054 * 15 14 12 35 35 H 1.08999 * 117.50450 * 0.02562 * 20 11 10 36 36 H 1.09000 * 117.49865 * 145.02255 * 20 11 10 37 37 H 1.09005 * 117.49933 * 214.98200 * 21 11 10 38 38 H 1.09004 * 117.50326 * 359.97391 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.7793 1.8515 0.9863 5 6 3.3269 0.8775 1.9975 6 7 4.7675 1.0940 2.1536 7 16 5.5679 0.4390 3.4468 8 8 6.9116 0.8711 3.2827 9 8 4.8014 0.8413 4.5738 10 6 5.4405 -1.3533 3.1974 11 6 6.3110 -2.0748 4.2284 12 6 6.0467 -1.7152 5.6677 13 1 6.6449 -0.9588 6.1540 14 6 5.0411 -2.3519 6.3639 15 7 4.3383 -3.3001 5.7839 16 14 4.6772 -1.8674 8.1309 17 1 3.6629 -0.7829 8.1480 18 1 4.1550 -3.0452 8.8695 19 1 5.9243 -1.3893 8.7800 20 6 7.7539 -2.3957 3.8339 21 6 6.7170 -3.5180 3.9238 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.7763 2.0841 -0.8130 28 1 3.0027 2.9044 1.0746 29 1 2.8306 1.0311 2.9557 30 1 3.1477 -0.1414 1.6546 31 1 5.2524 1.6210 1.4993 32 1 4.4026 -1.6639 3.3171 33 1 5.7819 -1.6056 2.1935 34 1 3.5844 -3.6973 6.2473 35 1 8.0834 -2.0925 2.8401 36 1 8.5121 -2.3472 4.6155 37 1 6.7934 -4.2075 4.7647 38 1 6.3638 -3.9538 2.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451777858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:17 Heat of formation + Delta-G solvation = -39.800463 kcal Electronic energy + Delta-G solvation = -19642.554728 eV Core-core repulsion = 16613.277417 eV Total energy + Delta-G solvation = -3029.277311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.25030 -36.71846 -36.14890 -35.01425 -33.99479 -32.02495 -30.42914 -28.18278 -25.53125 -25.36300 -23.37796 -21.16392 -19.74901 -18.88828 -18.48677 -16.79504 -16.44730 -16.34000 -15.24722 -14.97267 -14.69243 -14.42748 -14.07574 -13.88355 -13.67420 -13.10998 -12.86755 -12.43477 -12.14990 -12.05941 -11.79451 -11.23680 -11.20093 -11.11002 -11.07246 -10.99976 -10.87394 -10.68275 -10.51680 -10.41005 -10.09313 -9.66296 -9.38587 -9.03364 -8.89406 -8.50799 -8.06613 -6.13525 -4.26573 1.10281 2.05713 3.34290 3.40277 3.44994 3.61900 4.40646 4.58685 4.63783 4.90802 5.01607 5.04193 5.15810 5.22534 5.25874 5.33283 5.49141 5.51273 5.71360 5.74929 5.86415 5.95399 5.98949 6.06679 6.19675 6.29935 6.37920 6.52091 6.63409 6.69362 6.73849 7.00049 7.21971 7.33616 7.45797 7.79915 8.20224 8.80482 9.47609 10.94026 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.006058 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.495521 B = 4621.155172 C = 5000.201111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.147 4.147 4 C -0.163 4.163 5 C 0.135 3.865 6 N -1.132 6.132 7 S 2.614 3.386 8 O -0.974 6.974 9 O -0.948 6.948 10 C -0.557 4.557 11 C 0.042 3.958 12 C -0.523 4.523 13 H 0.068 0.932 14 C 0.086 3.914 15 N -0.873 5.873 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.270 1.270 20 C -0.206 4.206 21 C -0.136 4.136 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.409 0.591 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 5.297 -12.045 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.166 4.166 4 C -0.182 4.182 5 C 0.010 3.990 6 N -0.888 5.888 7 S 2.711 3.289 8 O -0.964 6.964 9 O -0.938 6.938 10 C -0.690 4.690 11 C 0.039 3.961 12 C -0.560 4.560 13 H 0.086 0.914 14 C -0.119 4.119 15 N -0.509 5.509 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.243 4.243 21 C -0.176 4.176 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.241 0.759 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.255 5.534 -11.145 13.507 hybrid contribution -0.432 -0.088 0.085 0.449 sum -5.686 5.446 -11.060 13.576 Atomic orbital electron populations 1.21673 0.94866 1.01824 1.01871 1.20889 0.96277 0.94664 1.03300 1.22848 0.98673 0.97573 0.97545 1.22872 0.99529 0.99527 0.96307 1.20447 0.80651 0.98180 0.99750 1.56019 1.16547 1.69382 1.46841 1.04915 0.73316 0.77904 0.72777 1.93499 1.36082 1.81164 1.85673 1.93530 1.71207 1.80665 1.48381 1.29974 1.10427 1.22646 1.05930 1.18247 0.89563 0.95744 0.92520 1.20562 1.18861 1.22915 0.93650 0.91424 1.24930 0.95453 0.93154 0.98377 1.69998 1.18316 1.24000 1.38543 0.86591 0.79364 0.78201 0.84147 1.19718 1.21164 1.19436 1.23145 0.94003 1.06713 1.00439 1.22510 1.02082 0.92521 1.00445 0.92388 0.92469 0.92880 0.91196 0.90144 0.87079 0.86604 0.89548 0.90766 0.75869 0.85405 0.88240 0.92738 0.91085 0.89637 0.89362 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.11 -1.09 6.10 -27.88 -0.17 -1.26 16 3 C -0.15 -1.42 9.51 -36.03 -0.34 -1.77 16 4 C -0.16 -1.80 9.65 -36.03 -0.35 -2.15 16 5 C 0.14 1.84 6.17 -5.19 -0.03 1.81 16 6 N -1.13 -17.17 5.88 -11.66 -0.07 -17.24 16 7 S 2.61 53.67 4.94 -107.50 -0.53 53.14 16 8 O -0.97 -21.99 18.08 -57.54 -1.04 -23.03 16 9 O -0.95 -22.96 16.92 -57.54 -0.97 -23.93 16 10 C -0.56 -11.57 6.01 37.16 0.22 -11.35 16 11 C 0.04 1.01 1.53 -155.67 -0.24 0.78 16 12 C -0.52 -14.38 7.62 -34.44 -0.26 -14.64 16 13 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 14 C 0.09 2.37 5.43 -17.82 -0.10 2.27 16 15 N -0.87 -24.03 12.72 55.43 0.71 -23.33 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.21 -4.54 9.92 -26.70 -0.26 -4.80 16 21 C -0.14 -3.13 9.26 -26.70 -0.25 -3.38 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.84 5.23 -51.93 -0.27 0.57 16 27 H 0.11 0.90 8.06 -52.48 -0.42 0.47 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.09 1.28 7.69 -51.93 -0.40 0.88 16 30 H 0.07 0.93 5.39 -51.93 -0.28 0.65 16 31 H 0.41 5.26 8.61 -34.47 -0.30 4.97 16 32 H 0.13 2.68 8.14 -51.92 -0.42 2.26 16 33 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 34 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 37 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -32.32 331.02 -9.21 -41.53 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.86 Total: 6.48 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: -1.41 Total: -35.35 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.64 Total: -40.57 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -2.01 Total: -46.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 53.67 SS G_CDS: -0.53 Total: 53.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.32 -9.21 -41.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451777858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.734 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds