Wall clock time and date at job start Mon Mar 30 2020 01:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46779 * 2 1 4 4 C 1.31009 * 119.99629 * 119.62449 * 3 2 1 5 5 C 1.50701 * 119.99942 * 10.20093 * 4 3 2 6 6 N 1.46503 * 109.46899 * 129.81553 * 5 4 3 7 7 S 1.65592 * 119.99994 * 165.00088 * 6 5 4 8 8 O 1.42102 * 104.27759 * 181.07209 * 7 6 5 9 9 O 1.42105 * 104.27911 * 308.92793 * 7 6 5 10 10 C 1.81401 * 104.45103 * 64.99902 * 7 6 5 11 11 C 1.53004 * 109.47157 * 172.19867 * 10 7 6 12 12 C 1.50696 * 115.54904 * 54.12381 * 11 10 7 13 13 H 1.08005 * 120.00008 * 264.66958 * 12 11 10 14 14 C 1.37878 * 119.99985 * 84.66845 * 12 11 10 15 15 N 1.31513 * 120.00240 * 1.97397 * 14 12 11 16 16 Si 1.86800 * 119.99615 * 181.97640 * 14 12 11 17 17 H 1.48501 * 109.47209 * 90.00340 * 16 14 12 18 18 H 1.48505 * 109.46936 * 210.00043 * 16 14 12 19 19 H 1.48495 * 109.47308 * 329.99596 * 16 14 12 20 20 C 1.52996 * 117.49802 * 268.45100 * 11 10 7 21 21 C 1.52992 * 117.49738 * 199.79382 * 11 10 7 22 22 H 1.09003 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47605 * 299.99669 * 1 2 3 24 24 H 1.09000 * 109.47453 * 60.00076 * 1 2 3 25 25 H 1.09001 * 109.47331 * 240.00909 * 2 1 3 26 26 H 1.08994 * 109.47588 * 120.00381 * 2 1 3 27 27 H 1.08004 * 120.00334 * 299.62685 * 3 2 1 28 28 H 1.07999 * 119.99885 * 190.19999 * 4 3 2 29 29 H 1.08997 * 109.47033 * 249.81403 * 5 4 3 30 30 H 1.08993 * 109.46892 * 9.81790 * 5 4 3 31 31 H 0.97003 * 119.99805 * 344.99586 * 6 5 4 32 32 H 1.08998 * 109.46974 * 292.20189 * 10 7 6 33 33 H 1.09002 * 109.47044 * 52.20237 * 10 7 6 34 34 H 0.96993 * 119.99881 * 185.02054 * 15 14 12 35 35 H 1.08999 * 117.50450 * 0.02562 * 20 11 10 36 36 H 1.09000 * 117.49865 * 145.02255 * 20 11 10 37 37 H 1.09005 * 117.49933 * 214.98200 * 21 11 10 38 38 H 1.09004 * 117.50326 * 359.97391 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.7793 1.8515 0.9863 5 6 3.3269 0.8775 1.9975 6 7 4.7675 1.0940 2.1536 7 16 5.5679 0.4390 3.4468 8 8 6.9116 0.8711 3.2827 9 8 4.8014 0.8413 4.5738 10 6 5.4405 -1.3533 3.1974 11 6 6.3110 -2.0748 4.2284 12 6 6.0467 -1.7152 5.6677 13 1 6.6449 -0.9588 6.1540 14 6 5.0411 -2.3519 6.3639 15 7 4.3383 -3.3001 5.7839 16 14 4.6772 -1.8674 8.1309 17 1 3.6629 -0.7829 8.1480 18 1 4.1550 -3.0452 8.8695 19 1 5.9243 -1.3893 8.7800 20 6 7.7539 -2.3957 3.8339 21 6 6.7170 -3.5180 3.9238 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.7763 2.0841 -0.8130 28 1 3.0027 2.9044 1.0746 29 1 2.8306 1.0311 2.9557 30 1 3.1477 -0.1414 1.6546 31 1 5.2524 1.6210 1.4993 32 1 4.4026 -1.6639 3.3171 33 1 5.7819 -1.6056 2.1935 34 1 3.5844 -3.6973 6.2473 35 1 8.0834 -2.0925 2.8401 36 1 8.5121 -2.3472 4.6155 37 1 6.7934 -4.2075 4.7647 38 1 6.3638 -3.9538 2.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451777858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:17 Heat of formation + Delta-G solvation = -61.658499 kcal Electronic energy + Delta-G solvation = -19643.502564 eV Core-core repulsion = 16613.277417 eV Total energy + Delta-G solvation = -3030.225146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.54295 -38.24142 -37.81971 -36.75229 -35.05165 -34.08233 -31.27231 -29.87747 -27.50094 -26.47984 -24.12711 -22.94535 -21.53027 -20.29348 -19.68087 -18.43695 -18.14423 -17.45059 -16.87194 -16.65625 -16.34783 -15.77092 -15.46095 -14.96464 -14.93219 -14.71355 -13.93402 -13.81585 -13.66302 -13.43758 -13.06255 -12.95645 -12.91388 -12.86818 -12.82723 -12.46043 -12.42125 -12.15005 -11.88236 -11.81257 -11.58080 -11.47011 -10.97919 -10.53111 -10.47283 -9.96078 -9.77183 -8.21123 -6.37287 -0.49629 1.20606 1.36599 1.41906 1.47717 2.19120 2.39691 2.98023 3.07741 3.37651 3.51266 3.80082 3.97535 4.10117 4.23592 4.29265 4.45302 4.49266 4.55615 4.57594 4.61446 4.76333 4.83778 4.86330 5.00103 5.04630 5.16066 5.22730 5.29152 5.39933 5.43629 5.64001 5.69692 5.72439 5.87473 6.20883 6.22598 6.70374 7.37472 8.85943 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.006058 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.495521 B = 4621.155172 C = 5000.201111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.126 4.126 4 C -0.181 4.181 5 C 0.127 3.873 6 N -1.113 6.113 7 S 2.627 3.373 8 O -0.998 6.998 9 O -0.993 6.993 10 C -0.552 4.552 11 C 0.006 3.994 12 C -0.540 4.540 13 H 0.047 0.953 14 C 0.049 3.951 15 N -0.889 5.889 16 Si 0.928 3.072 17 H -0.278 1.278 18 H -0.271 1.271 19 H -0.270 1.270 20 C -0.193 4.193 21 C -0.133 4.133 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.422 0.578 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.266 0.734 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 5.426 -14.127 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.146 4.146 4 C -0.200 4.200 5 C 0.002 3.998 6 N -0.874 5.874 7 S 2.724 3.276 8 O -0.988 6.988 9 O -0.983 6.983 10 C -0.685 4.685 11 C 0.004 3.996 12 C -0.577 4.577 13 H 0.065 0.935 14 C -0.155 4.155 15 N -0.525 5.525 16 Si 0.754 3.246 17 H -0.204 1.204 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.231 4.231 21 C -0.172 4.172 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.258 0.742 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.798 5.663 -13.224 15.510 hybrid contribution -0.285 -0.129 0.654 0.725 sum -6.083 5.534 -12.571 15.022 Atomic orbital electron populations 1.21671 0.94101 1.02206 1.02214 1.20976 0.96990 0.94665 1.03262 1.23087 0.96631 0.97796 0.97041 1.22753 1.01390 0.99437 0.96464 1.20640 0.79250 0.99995 0.99904 1.55478 1.17268 1.68865 1.45748 1.04195 0.72587 0.77870 0.72898 1.93454 1.37593 1.81573 1.86209 1.93474 1.72046 1.81459 1.51320 1.29849 1.09549 1.22163 1.06942 1.18405 0.91868 0.97282 0.92023 1.20730 1.18759 1.22451 0.95754 0.93504 1.25453 0.95626 0.93433 1.00978 1.70026 1.18613 1.24399 1.39425 0.86002 0.78963 0.78208 0.81469 1.20353 1.19587 1.19424 1.23213 0.92817 1.05323 1.01704 1.22443 1.02452 0.91692 1.00583 0.92084 0.93177 0.91490 0.89972 0.91425 0.84742 0.85706 0.91475 0.89486 0.74196 0.85892 0.84420 0.92496 0.88155 0.90248 0.91647 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.12 -2.02 6.10 29.85 0.18 -1.84 16 3 C -0.13 -2.08 9.51 25.64 0.24 -1.83 16 4 C -0.18 -3.63 9.65 25.64 0.25 -3.38 16 5 C 0.13 3.33 6.17 85.63 0.53 3.85 16 6 N -1.11 -32.38 5.88 -190.79 -1.12 -33.50 16 7 S 2.63 106.96 4.94 -56.49 -0.28 106.69 16 8 O -1.00 -44.51 18.08 -127.65 -2.31 -46.81 16 9 O -0.99 -49.10 16.92 -127.65 -2.16 -51.26 16 10 C -0.55 -22.24 6.01 71.98 0.43 -21.80 16 11 C 0.01 0.30 1.53 -52.93 -0.08 0.22 16 12 C -0.54 -30.10 7.62 25.60 0.20 -29.90 16 13 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 14 C 0.05 2.69 5.43 84.66 0.46 3.15 16 15 N -0.89 -49.02 12.72 21.45 0.27 -48.74 16 16 Si 0.93 44.88 29.54 68.60 2.03 46.91 16 17 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 20 C -0.19 -8.24 9.92 30.61 0.30 -7.94 16 21 C -0.13 -5.93 9.26 30.61 0.28 -5.65 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.30 5.23 -2.39 -0.01 1.28 16 27 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.07 2.01 7.69 -2.39 -0.02 1.99 16 30 H 0.09 2.05 5.39 -2.39 -0.01 2.04 16 31 H 0.42 10.09 8.61 -96.75 -0.83 9.26 16 32 H 0.12 5.07 8.14 -2.39 -0.02 5.05 16 33 H 0.14 4.36 8.09 -2.39 -0.02 4.34 16 34 H 0.27 13.93 8.32 -92.71 -0.77 13.15 16 35 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 37 H 0.06 3.19 8.14 -2.38 -0.02 3.17 16 38 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -69.22 331.02 0.15 -69.07 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.21 Total: 24.20 kcal Atomic # 6 Polarization: -70.06 SS G_CDS: 3.51 Total: -66.55 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -0.85 Total: -82.24 kcal Atomic # 8 Polarization: -93.60 SS G_CDS: -4.47 Total: -98.07 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 106.96 SS G_CDS: -0.28 Total: 106.69 kcal Total: -69.22 0.15 -69.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451777858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.411 kcal (2) G-P(sol) polarization free energy of solvation -69.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds