Wall clock time and date at job start Mon Mar 30 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47297 * 2 1 4 4 C 1.31004 * 120.00000 * 125.00031 * 3 2 1 5 5 C 1.50705 * 119.99934 * 180.02562 * 4 3 2 6 6 N 1.46490 * 109.47373 * 125.00033 * 5 4 3 7 7 S 1.65601 * 120.00173 * 164.99892 * 6 5 4 8 8 O 1.42107 * 104.27291 * 308.92374 * 7 6 5 9 9 O 1.42096 * 104.27630 * 181.07099 * 7 6 5 10 10 C 1.81393 * 104.44983 * 64.99627 * 7 6 5 11 11 C 1.53002 * 109.47058 * 173.81620 * 10 7 6 12 12 C 1.50693 * 115.55104 * 65.19449 * 11 10 7 13 13 H 1.08004 * 120.00010 * 264.78345 * 12 11 10 14 14 C 1.37876 * 120.00214 * 84.78707 * 12 11 10 15 15 N 1.31516 * 120.00020 * 352.22829 * 14 12 11 16 16 Si 1.86799 * 120.00138 * 172.22983 * 14 12 11 17 17 H 1.48503 * 109.46741 * 90.00000 * 16 14 12 18 18 H 1.48499 * 109.47144 * 209.99508 * 16 14 12 19 19 H 1.48499 * 109.47353 * 330.00006 * 16 14 12 20 20 C 1.53007 * 117.49436 * 279.52085 * 11 10 7 21 21 C 1.53000 * 117.49730 * 210.86641 * 11 10 7 22 22 H 1.09000 * 109.47483 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47074 * 299.99920 * 1 2 3 24 24 H 1.08997 * 109.47032 * 59.99522 * 1 2 3 25 25 H 1.09002 * 109.46699 * 239.99761 * 2 1 3 26 26 H 1.09001 * 109.46643 * 120.00194 * 2 1 3 27 27 H 1.08003 * 120.00110 * 305.00229 * 3 2 1 28 28 H 1.07997 * 119.99873 * 359.97438 * 4 3 2 29 29 H 1.08997 * 109.47173 * 4.99525 * 5 4 3 30 30 H 1.09003 * 109.46497 * 245.00104 * 5 4 3 31 31 H 0.97005 * 120.00085 * 344.99474 * 6 5 4 32 32 H 1.08997 * 109.47236 * 293.81609 * 10 7 6 33 33 H 1.08996 * 109.47383 * 53.81386 * 10 7 6 34 34 H 0.97000 * 120.00178 * 185.02788 * 15 14 12 35 35 H 1.08997 * 117.50283 * 0.02562 * 20 11 10 36 36 H 1.09001 * 117.48963 * 145.02035 * 20 11 10 37 37 H 1.08997 * 117.49994 * 214.97965 * 21 11 10 38 38 H 1.09005 * 117.50051 * 359.97400 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8643 1.8214 0.9293 5 6 3.3662 3.2424 0.9297 6 7 3.0837 3.8598 2.2277 7 16 3.8367 5.2716 2.6546 8 8 5.2161 5.0150 2.4289 9 8 3.3471 5.5492 3.9593 10 6 3.2140 6.4936 1.4675 11 6 3.7218 7.8843 1.8535 12 6 5.2133 8.0799 1.7631 13 1 5.8289 7.9520 2.6412 14 6 5.7920 8.4221 0.5593 15 7 5.0693 8.4287 -0.5394 16 14 7.6026 8.8762 0.4891 17 1 8.4104 7.6539 0.2465 18 1 7.8275 9.8450 -0.6136 19 1 8.0093 9.4905 1.7785 20 6 2.9786 8.6235 2.9680 21 6 2.8306 9.0810 1.5148 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7066 2.1087 -0.7661 28 1 3.1897 1.1335 1.6957 29 1 2.8643 3.8051 0.1426 30 1 4.4415 3.2478 0.7510 31 1 2.4554 3.4417 2.8372 32 1 3.5679 6.2421 0.4677 33 1 2.1241 6.4887 1.4789 34 1 5.4911 8.5980 -1.3964 35 1 2.1282 8.1190 3.4266 36 1 3.5685 9.2516 3.6356 37 1 3.3231 10.0097 1.2269 38 1 1.8827 8.8775 1.0166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451777859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:19 Heat of formation + Delta-G solvation = -47.946487 kcal Electronic energy + Delta-G solvation = -19304.924386 eV Core-core repulsion = 16275.293837 eV Total energy + Delta-G solvation = -3029.630549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -36.89052 -36.73523 -36.18011 -35.06546 -34.36084 -32.03652 -30.60412 -28.15036 -25.68173 -25.43145 -22.35663 -21.20651 -20.03816 -19.52319 -18.58394 -16.95404 -16.48561 -15.99741 -15.19901 -14.79763 -14.77572 -14.57506 -14.13679 -13.76902 -13.50008 -13.30454 -13.07416 -12.22191 -12.08689 -11.91221 -11.80397 -11.62139 -11.26362 -11.22016 -11.13430 -11.00627 -10.93169 -10.75821 -10.56585 -10.44390 -10.11326 -9.74042 -9.45196 -8.99532 -8.94218 -8.55580 -8.08139 -6.13502 -4.23799 1.07976 2.07878 3.31467 3.37027 3.42217 3.58035 4.38015 4.52169 4.60666 4.83030 5.03080 5.09164 5.13402 5.15046 5.20135 5.23496 5.42468 5.56075 5.69050 5.73418 5.74624 5.83783 5.97452 5.99021 6.16545 6.27876 6.38090 6.54094 6.62017 6.67753 6.73099 6.99122 7.23902 7.32989 7.39751 7.81112 8.21286 8.81690 9.47310 10.94223 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.004971 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.139868 B = 5630.885542 C = 5981.108503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.161 4.161 5 C 0.144 3.856 6 N -1.131 6.131 7 S 2.607 3.393 8 O -0.951 6.951 9 O -0.975 6.975 10 C -0.554 4.554 11 C 0.043 3.957 12 C -0.516 4.516 13 H 0.068 0.932 14 C 0.082 3.918 15 N -0.875 5.875 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.208 4.208 21 C -0.141 4.141 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.409 0.591 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 -12.625 -0.744 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.168 4.168 4 C -0.181 4.181 5 C 0.018 3.982 6 N -0.887 5.887 7 S 2.704 3.296 8 O -0.940 6.940 9 O -0.965 6.965 10 C -0.687 4.687 11 C 0.041 3.959 12 C -0.553 4.553 13 H 0.087 0.913 14 C -0.123 4.123 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.245 4.245 21 C -0.181 4.181 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.242 0.758 32 H 0.151 0.849 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.517 -12.374 -0.348 14.483 hybrid contribution 0.189 0.182 -0.625 0.678 sum -7.329 -12.193 -0.973 14.259 Atomic orbital electron populations 1.21717 0.95140 1.01536 1.02193 1.20655 0.96149 0.94263 1.02339 1.22962 0.97368 0.97434 0.99066 1.22936 0.98824 0.96591 0.99705 1.20300 1.01644 0.91367 0.84881 1.55972 1.62621 1.43079 1.27040 1.05125 0.74726 0.73998 0.75723 1.93533 1.31211 1.83019 1.86274 1.93502 1.81829 1.84590 1.36609 1.29976 1.08194 1.13690 1.16861 1.18282 0.93720 0.85973 0.97974 1.20527 0.89082 1.49383 0.96286 0.91345 1.24950 0.98168 0.93701 0.95468 1.69978 1.35615 1.47564 0.97924 0.86578 0.84943 0.78663 0.77982 1.20033 1.21085 1.19428 1.23196 1.02844 1.06304 0.92189 1.22552 0.99536 1.00424 0.95555 0.92696 0.92531 0.92543 0.91086 0.91589 0.86919 0.86806 0.91526 0.89333 0.75841 0.84890 0.88263 0.92747 0.90672 0.89524 0.89591 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 37.16 0.37 -0.72 16 2 C -0.10 -0.77 6.38 -27.88 -0.18 -0.95 16 3 C -0.15 -1.44 9.12 -36.03 -0.33 -1.77 16 4 C -0.16 -1.78 9.26 -36.02 -0.33 -2.11 16 5 C 0.14 1.95 6.57 -5.20 -0.03 1.92 16 6 N -1.13 -17.04 5.88 -11.66 -0.07 -17.11 16 7 S 2.61 52.83 5.19 -107.50 -0.56 52.27 16 8 O -0.95 -22.76 17.17 -57.54 -0.99 -23.75 16 9 O -0.97 -21.54 18.08 -57.54 -1.04 -22.58 16 10 C -0.55 -11.60 5.93 37.16 0.22 -11.38 16 11 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 12 C -0.52 -14.14 8.18 -34.44 -0.28 -14.43 16 13 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 14 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 15 N -0.88 -24.01 12.98 55.43 0.72 -23.29 16 16 Si 0.89 21.39 29.55 -169.99 -5.02 16.37 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.21 -4.60 9.96 -26.69 -0.27 -4.86 16 21 C -0.14 -3.23 9.49 -26.69 -0.25 -3.49 16 22 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 27 H 0.11 1.05 7.84 -52.48 -0.41 0.64 16 28 H 0.11 1.17 7.84 -52.49 -0.41 0.76 16 29 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 30 H 0.09 1.30 7.69 -51.93 -0.40 0.90 16 31 H 0.41 5.24 8.61 -34.47 -0.30 4.95 16 32 H 0.13 2.87 8.14 -51.93 -0.42 2.45 16 33 H 0.10 1.76 8.09 -51.93 -0.42 1.34 16 34 H 0.26 6.86 8.32 -40.82 -0.34 6.53 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -32.20 336.73 -9.37 -41.57 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.10 Total: 6.26 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: -1.39 Total: -34.81 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.65 Total: -40.40 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.03 Total: -46.33 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 52.83 SS G_CDS: -0.56 Total: 52.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.20 -9.37 -41.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451777859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.378 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds