Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47297 * 2 1 4 4 C 1.31004 * 120.00000 * 125.00031 * 3 2 1 5 5 C 1.50705 * 119.99934 * 180.02562 * 4 3 2 6 6 N 1.46490 * 109.47373 * 125.00033 * 5 4 3 7 7 S 1.65601 * 120.00173 * 164.99892 * 6 5 4 8 8 O 1.42107 * 104.27291 * 308.92374 * 7 6 5 9 9 O 1.42096 * 104.27630 * 181.07099 * 7 6 5 10 10 C 1.81393 * 104.44983 * 64.99627 * 7 6 5 11 11 C 1.53002 * 109.47058 * 173.81620 * 10 7 6 12 12 C 1.50693 * 115.55104 * 65.19449 * 11 10 7 13 13 H 1.08004 * 120.00010 * 264.78345 * 12 11 10 14 14 C 1.37876 * 120.00214 * 84.78707 * 12 11 10 15 15 N 1.31516 * 120.00020 * 352.22829 * 14 12 11 16 16 Si 1.86799 * 120.00138 * 172.22983 * 14 12 11 17 17 H 1.48503 * 109.46741 * 90.00000 * 16 14 12 18 18 H 1.48499 * 109.47144 * 209.99508 * 16 14 12 19 19 H 1.48499 * 109.47353 * 330.00006 * 16 14 12 20 20 C 1.53007 * 117.49436 * 279.52085 * 11 10 7 21 21 C 1.53000 * 117.49730 * 210.86641 * 11 10 7 22 22 H 1.09000 * 109.47483 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47074 * 299.99920 * 1 2 3 24 24 H 1.08997 * 109.47032 * 59.99522 * 1 2 3 25 25 H 1.09002 * 109.46699 * 239.99761 * 2 1 3 26 26 H 1.09001 * 109.46643 * 120.00194 * 2 1 3 27 27 H 1.08003 * 120.00110 * 305.00229 * 3 2 1 28 28 H 1.07997 * 119.99873 * 359.97438 * 4 3 2 29 29 H 1.08997 * 109.47173 * 4.99525 * 5 4 3 30 30 H 1.09003 * 109.46497 * 245.00104 * 5 4 3 31 31 H 0.97005 * 120.00085 * 344.99474 * 6 5 4 32 32 H 1.08997 * 109.47236 * 293.81609 * 10 7 6 33 33 H 1.08996 * 109.47383 * 53.81386 * 10 7 6 34 34 H 0.97000 * 120.00178 * 185.02788 * 15 14 12 35 35 H 1.08997 * 117.50283 * 0.02562 * 20 11 10 36 36 H 1.09001 * 117.48963 * 145.02035 * 20 11 10 37 37 H 1.08997 * 117.49994 * 214.97965 * 21 11 10 38 38 H 1.09005 * 117.50051 * 359.97400 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8643 1.8214 0.9293 5 6 3.3662 3.2424 0.9297 6 7 3.0837 3.8598 2.2277 7 16 3.8367 5.2716 2.6546 8 8 5.2161 5.0150 2.4289 9 8 3.3471 5.5492 3.9593 10 6 3.2140 6.4936 1.4675 11 6 3.7218 7.8843 1.8535 12 6 5.2133 8.0799 1.7631 13 1 5.8289 7.9520 2.6412 14 6 5.7920 8.4221 0.5593 15 7 5.0693 8.4287 -0.5394 16 14 7.6026 8.8762 0.4891 17 1 8.4104 7.6539 0.2465 18 1 7.8275 9.8450 -0.6136 19 1 8.0093 9.4905 1.7785 20 6 2.9786 8.6235 2.9680 21 6 2.8306 9.0810 1.5148 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7066 2.1087 -0.7661 28 1 3.1897 1.1335 1.6957 29 1 2.8643 3.8051 0.1426 30 1 4.4415 3.2478 0.7510 31 1 2.4554 3.4417 2.8372 32 1 3.5679 6.2421 0.4677 33 1 2.1241 6.4887 1.4789 34 1 5.4911 8.5980 -1.3964 35 1 2.1282 8.1190 3.4266 36 1 3.5685 9.2516 3.6356 37 1 3.3231 10.0097 1.2269 38 1 1.8827 8.8775 1.0166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451777859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = -69.426196 kcal Electronic energy + Delta-G solvation = -19305.855817 eV Core-core repulsion = 16275.293837 eV Total energy + Delta-G solvation = -3030.561979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.56330 -38.03957 -37.66845 -36.78029 -35.33445 -34.08182 -31.45352 -29.84778 -27.49072 -26.60034 -23.11722 -22.98944 -21.56875 -20.68558 -20.11849 -18.44431 -18.33708 -17.37776 -16.79901 -16.68723 -16.02525 -15.67730 -15.55288 -15.13109 -14.90208 -14.34890 -14.21923 -13.74922 -13.64846 -13.15135 -13.13027 -12.90384 -12.87836 -12.86340 -12.80448 -12.72135 -12.42600 -12.21257 -11.91353 -11.82555 -11.64348 -11.53874 -10.87102 -10.63871 -10.53983 -10.01757 -9.80833 -8.19190 -6.33612 -0.51251 1.21827 1.38838 1.41404 1.49845 2.16237 2.40078 2.94848 3.08145 3.38613 3.45974 3.78753 3.96261 4.10621 4.29904 4.32764 4.39146 4.52201 4.52599 4.60107 4.61565 4.70306 4.82963 4.87278 4.98329 5.06546 5.13661 5.21178 5.22198 5.40990 5.47297 5.59233 5.72099 5.75978 5.85493 6.20380 6.23321 6.72384 7.38614 8.87903 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.004971 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.139868 B = 5630.885542 C = 5981.108503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.177 4.177 5 C 0.136 3.864 6 N -1.112 6.112 7 S 2.624 3.376 8 O -0.994 6.994 9 O -0.995 6.995 10 C -0.551 4.551 11 C 0.009 3.991 12 C -0.535 4.535 13 H 0.048 0.952 14 C 0.044 3.956 15 N -0.892 5.892 16 Si 0.935 3.065 17 H -0.277 1.277 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.197 4.197 21 C -0.138 4.138 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.423 0.577 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.266 0.734 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -13.731 -1.231 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.152 4.152 4 C -0.196 4.196 5 C 0.011 3.989 6 N -0.873 5.873 7 S 2.721 3.279 8 O -0.984 6.984 9 O -0.986 6.986 10 C -0.684 4.684 11 C 0.007 3.993 12 C -0.573 4.573 13 H 0.066 0.934 14 C -0.159 4.159 15 N -0.528 5.528 16 Si 0.760 3.240 17 H -0.203 1.203 18 H -0.198 1.198 19 H -0.194 1.194 20 C -0.234 4.234 21 C -0.177 4.177 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.258 0.742 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.934 -13.472 -0.822 16.186 hybrid contribution 0.568 0.467 -0.496 0.887 sum -8.366 -13.006 -1.318 15.520 Atomic orbital electron populations 1.21715 0.94457 1.02301 1.02065 1.20716 0.96668 0.93107 1.03076 1.23195 0.95592 0.98397 0.97980 1.22776 1.00426 0.95219 1.01213 1.20484 1.01089 0.93238 0.84097 1.55461 1.62389 1.41349 1.28117 1.04318 0.73932 0.74573 0.75048 1.93479 1.34277 1.83924 1.86737 1.93461 1.81907 1.85375 1.37841 1.29862 1.10336 1.11955 1.16270 1.18425 0.92649 0.88036 1.00181 1.20706 0.91056 1.49748 0.95759 0.93363 1.25506 1.01240 0.93822 0.95376 1.70016 1.36629 1.48062 0.98089 0.85902 0.81407 0.78468 0.78198 1.20254 1.19777 1.19449 1.23246 1.02948 1.05437 0.91761 1.22514 0.99894 0.98988 0.96321 0.91567 0.92996 0.92341 0.90037 0.91201 0.86415 0.86154 0.90247 0.91054 0.74184 0.85780 0.84769 0.92509 0.88254 0.89981 0.91550 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.90 71.98 0.71 -1.07 16 2 C -0.10 -1.32 6.38 29.85 0.19 -1.13 16 3 C -0.13 -2.25 9.12 25.64 0.23 -2.02 16 4 C -0.18 -3.59 9.26 25.64 0.24 -3.35 16 5 C 0.14 3.54 6.57 85.64 0.56 4.10 16 6 N -1.11 -32.11 5.88 -190.80 -1.12 -33.23 16 7 S 2.62 105.16 5.19 -56.49 -0.29 104.87 16 8 O -0.99 -48.45 17.17 -127.65 -2.19 -50.64 16 9 O -1.00 -43.18 18.08 -127.65 -2.31 -45.49 16 10 C -0.55 -22.48 5.93 71.98 0.43 -22.05 16 11 C 0.01 0.45 1.32 -52.93 -0.07 0.38 16 12 C -0.54 -29.75 8.18 25.60 0.21 -29.54 16 13 H 0.05 2.79 7.83 -2.91 -0.02 2.77 16 14 C 0.04 2.39 5.38 84.65 0.46 2.84 16 15 N -0.89 -48.90 12.98 21.45 0.28 -48.62 16 16 Si 0.94 44.05 29.55 68.60 2.03 46.08 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 C -0.20 -8.46 9.96 30.62 0.30 -8.15 16 21 C -0.14 -6.16 9.49 30.62 0.29 -5.87 16 22 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 27 H 0.12 1.89 7.84 -2.91 -0.02 1.86 16 28 H 0.12 2.27 7.84 -2.91 -0.02 2.24 16 29 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 30 H 0.07 2.10 7.69 -2.39 -0.02 2.08 16 31 H 0.42 10.05 8.61 -96.74 -0.83 9.22 16 32 H 0.12 5.29 8.14 -2.39 -0.02 5.27 16 33 H 0.13 4.39 8.09 -2.39 -0.02 4.38 16 34 H 0.27 13.82 8.32 -92.71 -0.77 13.05 16 35 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.09 3.50 8.14 -2.38 -0.02 3.49 16 Total: -1.00 -68.37 336.73 0.14 -68.22 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.20 Total: 24.66 kcal Atomic # 6 Polarization: -69.41 SS G_CDS: 3.55 Total: -65.86 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -0.84 Total: -81.85 kcal Atomic # 8 Polarization: -91.63 SS G_CDS: -4.50 Total: -96.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 105.16 SS G_CDS: -0.29 Total: 104.87 kcal Total: -68.37 0.14 -68.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451777859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.204 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds