Wall clock time and date at job start Mon Mar 30 2020 01:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47213 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47207 * 308.04663 * 3 2 1 5 5 C 1.36740 * 119.99896 * 263.75974 * 4 3 2 6 6 H 1.08003 * 120.00145 * 201.38224 * 5 4 3 7 7 C 1.39069 * 120.00266 * 21.38539 * 5 4 3 8 8 N 1.31368 * 120.00037 * 5.92762 * 7 5 4 9 9 Si 1.86797 * 120.00415 * 185.92988 * 7 5 4 10 10 H 1.48509 * 109.46971 * 59.99673 * 9 7 5 11 11 H 1.48501 * 109.47528 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47263 * 299.99884 * 9 7 5 13 13 C 1.34775 * 120.00261 * 83.76171 * 4 3 2 14 14 O 1.21838 * 120.00626 * 180.02562 * 13 4 3 15 15 C 1.41342 * 119.99698 * 359.97438 * 13 4 3 16 16 C 1.35786 * 119.99985 * 187.66112 * 15 13 4 17 17 C 1.41517 * 120.00156 * 20.23469 * 16 15 13 18 18 C 1.38029 * 126.11105 * 202.95801 * 17 16 15 19 19 C 1.40287 * 106.52550 * 179.90969 * 18 17 16 20 20 C 1.35175 * 107.21376 * 0.35401 * 19 18 17 21 21 C 1.50698 * 125.48079 * 179.77941 * 20 19 18 22 22 C 1.53000 * 109.47452 * 89.97296 * 21 20 19 23 23 O 1.34042 * 109.04220 * 359.77673 * 20 19 18 24 24 H 4.40640 * 5.51435 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.46857 * 188.04635 * 3 2 1 26 26 H 1.09002 * 109.46852 * 68.04901 * 3 2 1 27 27 H 0.96993 * 120.00083 * 180.02562 * 8 7 5 28 28 H 1.07996 * 120.00117 * 7.39534 * 15 13 4 29 29 H 1.08002 * 120.00323 * 200.24112 * 16 15 13 30 30 H 1.08003 * 126.74081 * 0.02562 * 18 17 16 31 31 H 1.07998 * 126.39597 * 180.13036 * 19 18 17 32 32 H 1.09008 * 109.47304 * 209.97209 * 21 20 19 33 33 H 1.08998 * 109.47529 * 329.97141 * 21 20 19 34 34 H 1.08994 * 109.47188 * 179.97438 * 22 21 20 35 35 H 1.08998 * 109.47005 * 300.00180 * 22 21 20 36 36 H 1.09002 * 109.46841 * 59.99950 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.8503 1.0877 5 6 3.4838 -0.2939 2.2870 6 1 4.1484 -0.8224 2.9545 7 6 2.9830 0.9524 2.6474 8 7 2.0853 1.5431 1.8917 9 14 3.5868 1.7867 4.2058 10 1 5.0534 2.0017 4.1159 11 1 2.9038 3.0959 4.3630 12 1 3.2836 0.9259 5.3774 13 6 3.2405 -2.1816 0.9063 14 8 3.6465 -2.8895 1.8110 15 6 2.8792 -2.7568 -0.3333 16 6 2.8363 -4.1072 -0.4683 17 6 2.7252 -4.9298 0.6779 18 6 3.1039 -6.2540 0.7687 19 6 2.8154 -6.6626 2.0793 20 6 2.2775 -5.6009 2.7201 21 6 1.8122 -5.5880 4.1534 22 6 2.9710 -5.1731 5.0622 23 8 2.2246 -4.5613 1.8756 24 1 -1.0498 0.0000 0.0004 25 1 3.0089 1.0184 0.1438 26 1 3.0096 -0.3833 -0.9532 27 1 1.7363 2.4125 2.1429 28 1 2.6332 -2.1222 -1.1718 29 1 2.8870 -4.5537 -1.4504 30 1 3.5390 -6.8567 -0.0149 31 1 2.9873 -7.6435 2.4973 32 1 0.9924 -4.8780 4.2629 33 1 1.4698 -6.5843 4.4332 34 1 2.6343 -5.1634 6.0988 35 1 3.7908 -5.8831 4.9526 36 1 3.3134 -4.1768 4.7823 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490971068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:15 Heat of formation + Delta-G solvation = 74.404196 kcal Electronic energy + Delta-G solvation = -20966.766077 eV Core-core repulsion = 17806.997100 eV Total energy + Delta-G solvation = -3159.768977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.77747 -38.77863 -35.41624 -33.91292 -32.98376 -32.18117 -31.65660 -31.22783 -27.77343 -26.48866 -25.10517 -23.57851 -21.75280 -21.09960 -19.74892 -18.30244 -17.83012 -16.94536 -16.48124 -15.60807 -15.18110 -14.71773 -14.33034 -14.14117 -13.96696 -13.49574 -13.18664 -12.67901 -12.50348 -12.43499 -12.23243 -12.08323 -11.88560 -11.48573 -11.31977 -11.12924 -11.05589 -10.67833 -10.61333 -10.41071 -9.60686 -9.33070 -9.31561 -9.09104 -8.82493 -8.37047 -7.85321 -7.11020 -6.38796 -3.89145 1.16611 2.78399 3.15535 3.19464 3.22680 3.37521 3.69709 3.79004 4.02946 4.14453 4.47883 5.08521 5.10753 5.14150 5.32938 5.45426 5.51049 5.55492 5.58915 5.76948 5.79026 5.99830 6.04528 6.16146 6.28720 6.36018 6.38714 6.57493 6.62061 6.77402 6.85260 6.95370 7.07324 7.17694 7.44702 7.94193 8.04982 8.41972 8.81327 9.11689 9.29927 9.96109 10.58362 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017039 B = 0.006860 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.900891 B = 4080.616310 C = 5083.471455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.107 4.107 3 C 0.225 3.775 4 N -0.427 5.427 5 C -0.290 4.290 6 H 0.104 0.896 7 C 0.026 3.974 8 N -0.866 5.866 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.461 3.539 14 O -0.571 6.571 15 C -0.163 4.163 16 C -0.068 4.068 17 C 0.045 3.955 18 C -0.211 4.211 19 C -0.225 4.225 20 C -0.003 4.003 21 C -0.041 4.041 22 C -0.148 4.148 23 O -0.115 6.115 24 H 0.198 0.802 25 H 0.123 0.877 26 H 0.060 0.940 27 H 0.271 0.729 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -8.088 -2.570 8.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.109 4.109 3 C 0.102 3.898 4 N -0.143 5.143 5 C -0.418 4.418 6 H 0.122 0.878 7 C -0.178 4.178 8 N -0.505 5.505 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.254 3.746 14 O -0.457 6.457 15 C -0.184 4.184 16 C -0.089 4.089 17 C -0.006 4.006 18 C -0.231 4.231 19 C -0.244 4.244 20 C -0.056 4.056 21 C -0.078 4.078 22 C -0.205 4.205 23 O -0.008 6.008 24 H 0.216 0.784 25 H 0.141 0.859 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.892 -7.862 -2.010 8.163 hybrid contribution -0.045 0.535 0.551 0.770 sum -0.937 -7.326 -1.458 7.529 Atomic orbital electron populations 1.24270 0.95401 1.04671 1.04327 1.23212 0.94353 0.96700 0.96630 1.18501 0.84243 0.98700 0.88349 1.43728 1.53836 1.04771 1.12014 1.19728 1.25730 1.01186 0.95202 0.87803 1.25449 0.95415 0.97578 0.99335 1.69930 1.26337 1.16451 1.37745 0.85909 0.78831 0.78148 0.81359 1.19757 1.20830 1.19751 1.16728 0.86609 0.82391 0.88880 1.90709 1.51476 1.59391 1.44104 1.22526 1.00677 0.95592 0.99596 1.20247 1.01730 0.92517 0.94440 1.19564 1.02839 0.92782 0.85426 1.21976 1.08050 0.94913 0.98114 1.21183 1.08483 0.99626 0.95133 1.22484 1.03602 0.86305 0.93200 1.19999 0.98992 1.02460 0.86371 1.21752 0.97606 1.03123 0.98033 1.84389 1.62022 1.35506 1.18871 0.78441 0.85920 0.92245 0.91783 0.85831 0.83939 0.84175 0.84534 0.90488 0.89821 0.92386 0.92671 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.66 19.25 29.55 0.57 -5.09 16 2 C -0.11 -2.44 11.34 -37.12 -0.42 -2.86 16 3 C 0.23 5.03 4.79 -6.83 -0.03 5.00 16 4 N -0.43 -10.90 2.60 -121.28 -0.31 -11.21 16 5 C -0.29 -7.92 9.33 -15.05 -0.14 -8.06 16 6 H 0.10 2.97 7.36 -52.48 -0.39 2.58 16 7 C 0.03 0.67 5.21 -17.44 -0.09 0.58 16 8 N -0.87 -22.30 8.86 55.50 0.49 -21.81 16 9 Si 0.93 20.41 29.56 -169.99 -5.02 15.39 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.46 11.55 6.92 -15.08 -0.10 11.44 16 14 O -0.57 -15.88 12.43 -19.71 -0.25 -16.12 16 15 C -0.16 -3.30 8.93 -39.28 -0.35 -3.65 16 16 C -0.07 -1.23 9.89 -39.21 -0.39 -1.62 16 17 C 0.05 0.92 5.67 -38.41 -0.22 0.70 16 18 C -0.21 -3.71 10.90 -38.89 -0.42 -4.13 16 19 C -0.23 -3.86 10.76 -39.90 -0.43 -4.29 16 20 C 0.00 -0.05 6.56 -35.40 -0.23 -0.28 16 21 C -0.04 -0.63 6.46 -27.88 -0.18 -0.81 16 22 C -0.15 -2.25 9.89 37.16 0.37 -1.89 16 23 O -0.12 -2.63 7.53 -20.16 -0.15 -2.78 16 24 H 0.20 3.42 7.80 -54.10 -0.42 3.00 16 25 H 0.12 2.88 6.19 -51.93 -0.32 2.56 16 26 H 0.06 1.11 6.36 -51.93 -0.33 0.78 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.12 2.15 6.11 -52.49 -0.32 1.83 16 29 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 315.20 15.07 4.75 4.75 Total: -1.00 -32.09 315.20 -6.87 -38.95 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.30 Total: 7.81 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.07 Total: -14.97 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.18 Total: -33.02 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.40 Total: -18.91 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.09 -6.87 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.358 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds